Literature DB >> 22596931

Recommendations and proposed guidelines for assessing the cumulative evidence on joint effects of genes and environments on cancer occurrence in humans.

Paolo Boffetta1, Deborah M Winn, John P Ioannidis, Duncan C Thomas, Julian Little, George Davey Smith, Vincent J Cogliano, Stephen S Hecht, Daniela Seminara, Paolo Vineis, Muin J Khoury.   

Abstract

We propose guidelines to evaluate the cumulative evidence of gene-environment (G × E) interactions in the causation of human cancer. Our approach has its roots in the HuGENet and IARC Monographs evaluation processes for genetic and environmental risk factors, respectively, and can be applied to common chronic diseases other than cancer. We first review issues of definitions of G × E interactions, discovery and modelling methods for G × E interactions, and issues in systematic reviews of evidence for G × E interactions, since these form the foundation for appraising the credibility of evidence in this contentious field. We then propose guidelines that include four steps: (i) score the strength of the evidence for main effects of the (a) environmental exposure and (b) genetic variant; (ii) establish a prior score category and decide on the pattern of interaction to be expected; (iii) score the strength of the evidence for interaction between the environmental exposure and the genetic variant; and (iv) examine the overall plausibility of interaction by combining the prior score and the strength of the evidence and interpret results. We finally apply the scheme to the interaction between NAT2 polymorphism and tobacco smoking in determining bladder cancer risk.

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Year:  2012        PMID: 22596931      PMCID: PMC3481885          DOI: 10.1093/ije/dys010

Source DB:  PubMed          Journal:  Int J Epidemiol        ISSN: 0300-5771            Impact factor:   7.196


  105 in total

Review 1.  Genomic medicine--a primer.

Authors:  Alan E Guttmacher; Francis S Collins
Journal:  N Engl J Med       Date:  2002-11-07       Impact factor: 91.245

2.  Using hierarchical modeling in genetic association studies with multiple markers: application to a case-control study of bladder cancer.

Authors:  Rayjean J Hung; Paul Brennan; Christian Malaveille; Stefano Porru; Francesco Donato; Paolo Boffetta; John S Witte
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2004-06       Impact factor: 4.254

Review 3.  Gene-environment interactions in human diseases.

Authors:  David J Hunter
Journal:  Nat Rev Genet       Date:  2005-04       Impact factor: 53.242

4.  Stochastic modelling of colon cancer: is there a role for genomic instability?

Authors:  Mark P Little; Guangquan Li
Journal:  Carcinogenesis       Date:  2006-09-14       Impact factor: 4.944

5.  A support vector machine approach for detecting gene-gene interaction.

Authors:  Shyh-Huei Chen; Jielin Sun; Latchezar Dimitrov; Aubrey R Turner; Tamara S Adams; Deborah A Meyers; Bao-Li Chang; S Lilly Zheng; Henrik Grönberg; Jianfeng Xu; Fang-Chi Hsu
Journal:  Genet Epidemiol       Date:  2008-02       Impact factor: 2.135

6.  When one depends on the other: reporting of interaction in case-control and cohort studies.

Authors:  Mirjam J Knol; Matthias Egger; Pippa Scott; Mirjam I Geerlings; Jan P Vandenbroucke
Journal:  Epidemiology       Date:  2009-03       Impact factor: 4.822

7.  Tests for gene-environment interaction from case-control data: a novel study of type I error, power and designs.

Authors:  Bhramar Mukherjee; Jaeil Ahn; Stephen B Gruber; Gad Rennert; Victor Moreno; Nilanjan Chatterjee
Journal:  Genet Epidemiol       Date:  2008-11       Impact factor: 2.135

Review 8.  Architecture of inherited susceptibility to common cancer.

Authors:  Olivia Fletcher; Richard S Houlston
Journal:  Nat Rev Cancer       Date:  2010-05       Impact factor: 60.716

9.  Strengthening the reporting of genetic association studies (STREGA): an extension of the strengthening the reporting of observational studies in epidemiology (STROBE) statement.

Authors:  Julian Little; Julian P T Higgins; John P A Ioannidis; David Moher; France Gagnon; Erik von Elm; Muin J Khoury; Barbara Cohen; George Davey-Smith; Jeremy Grimshaw; Paul Scheet; Marta Gwinn; Robin E Williamson; Guang Yong Zou; Kim Hutchings; Candice Y Johnson; Valerie Tait; Miriam Wiens; Jean Golding; Cornelia van Duijn; John McLaughlin; Andrew Paterson; George Wells; Isabel Fortier; Matthew Freedman; Maja Zecevic; Richard King; Claire Infante-Rivard; Alex F Stewart; Nick Birkett
Journal:  J Clin Epidemiol       Date:  2009-02-12       Impact factor: 6.437

10.  Aldehyde dehydrogenase 2 and head and neck cancer: a meta-analysis implementing a Mendelian randomization approach.

Authors:  Stefania Boccia; Mia Hashibe; Paola Gallì; Emma De Feo; Takahiro Asakage; Tomoko Hashimoto; Akio Hiraki; Takahiko Katoh; Takeshi Nomura; Akira Yokoyama; Cornelia M van Duijn; Gualtiero Ricciardi; Paolo Boffetta
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2009-01       Impact factor: 4.254

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  21 in total

1.  Commentary: reporting and assessing evidence for interaction: why, when and how?

Authors:  David Clayton
Journal:  Int J Epidemiol       Date:  2012-05-16       Impact factor: 7.196

2.  Commentary: thoughts on assessing evidence for gene by environment interaction.

Authors:  Clarice R Weinberg
Journal:  Int J Epidemiol       Date:  2012-05-16       Impact factor: 7.196

3.  Gene-environment interactions in cancer epidemiology: a National Cancer Institute Think Tank report.

Authors:  Carolyn M Hutter; Leah E Mechanic; Nilanjan Chatterjee; Peter Kraft; Elizabeth M Gillanders
Journal:  Genet Epidemiol       Date:  2013-10-05       Impact factor: 2.135

Review 4.  Knowledge integration in cancer: current landscape and future prospects.

Authors:  John P A Ioannidis; Sheri D Schully; Tram Kim Lam; Muin J Khoury
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2012-10-23       Impact factor: 4.254

Review 5.  Nature, Nurture, and Cancer Risks: Genetic and Nutritional Contributions to Cancer.

Authors:  Evropi Theodoratou; Maria Timofeeva; Xue Li; Xiangrui Meng; John P A Ioannidis
Journal:  Annu Rev Nutr       Date:  2017-08-21       Impact factor: 11.848

Review 6.  Association between NQO1 C609T polymorphism and bladder cancer susceptibility: a systemic review and meta-analysis.

Authors:  Min Gong; Qingtong Yi; Weiming Wang
Journal:  Tumour Biol       Date:  2013-06-08

Review 7.  Genetic epidemiology and insights into interactive genetic and environmental effects in autism spectrum disorders.

Authors:  Young Shin Kim; Bennett L Leventhal
Journal:  Biol Psychiatry       Date:  2014-11-05       Impact factor: 13.382

Review 8.  Review of the Gene-Environment Interaction Literature in Cancer: What Do We Know?

Authors:  Naoko I Simonds; Armen A Ghazarian; Camilla B Pimentel; Sheri D Schully; Gary L Ellison; Elizabeth M Gillanders; Leah E Mechanic
Journal:  Genet Epidemiol       Date:  2016-04-07       Impact factor: 2.135

9.  Genetics in population health science: strategies and opportunities.

Authors:  Daniel W Belsky; Terrie E Moffitt; Avshalom Caspi
Journal:  Am J Public Health       Date:  2013-08-08       Impact factor: 9.308

Review 10.  A review of NCI's extramural grant portfolio: identifying opportunities for future research in genes and environment in cancer.

Authors:  Armen A Ghazarian; Naoko I Simonds; Kelly Bennett; Camilla B Pimentel; Gary L Ellison; Elizabeth M Gillanders; Sheri D Schully; Leah E Mechanic
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2013-03-05       Impact factor: 4.254

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