Literature DB >> 22590727

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability.

Tina Jørgensen1, James Haile, Per Möller, Andrei Andreev, Sanne Boessenkool, Morten Rasmussen, Frank Kienast, Eric Coissac, Pierre Taberlet, Christian Brochmann, Nancy H Bigelow, Kenneth Andersen, Ludovic Orlando, M Thomas P Gilbert, Eske Willerslev.   

Abstract

Although ancient DNA from sediments (sedaDNA) has been used to investigate past ecosystems, the approach has never been directly compared with the traditional methods of pollen and macrofossil analysis. We conducted a comparative survey of 18 ancient permafrost samples spanning the Late Pleistocene (46-12.5 thousand years ago), from the Taymyr Peninsula in northern Siberia. The results show that pollen, macrofossils and sedaDNA are complementary rather than overlapping and, in combination, reveal more detailed information on plant palaeocommunities than can be achieved by each individual approach. SedaDNA and macrofossils share greater overlap in plant identifications than with pollen, suggesting that sedaDNA is local in origin. These two proxies also permit identification to lower taxonomic levels than pollen, enabling investigation into temporal changes in species composition and the determination of indicator species to describe environmental changes. Combining data from all three proxies reveals an area continually dominated by a mosaic vegetation of tundra-steppe, pioneer and wet-indicator plants. Such vegetational stability is unexpected, given the severe climate changes taking place in the Northern Hemisphere during this time, with changes in average annual temperatures of >22 °C. This may explain the abundance of ice-age mammals such as horse and bison in Taymyr Peninsula during the Pleistocene and why it acted as a refugium for the last mainland woolly mammoth. Our finding reveals the benefits of combining sedaDNA, pollen and macrofossil for palaeovegetational reconstruction and adds to the increasing evidence suggesting large areas of the Northern Hemisphere remained ecologically stable during the Late Pleistocene.

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Year:  2012        PMID: 22590727     DOI: 10.1111/j.1365-294x.2011.05287.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  25 in total

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2.  Proxy comparison in ancient peat sediments: pollen, macrofossil and plant DNA.

Authors:  Laura Parducci; Minna Väliranta; J Sakari Salonen; Tiina Ronkainen; Irina Matetovici; Sonia L Fontana; Tiina Eskola; Pertti Sarala; Yoshihisa Suyama
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

Review 3.  Ancient and modern environmental DNA.

Authors:  Mikkel Winther Pedersen; Søren Overballe-Petersen; Luca Ermini; Clio Der Sarkissian; James Haile; Micaela Hellstrom; Johan Spens; Philip Francis Thomsen; Kristine Bohmann; Enrico Cappellini; Ida Bærholm Schnell; Nathan A Wales; Christian Carøe; Paula F Campos; Astrid M Z Schmidt; M Thomas P Gilbert; Anders J Hansen; Ludovic Orlando; Eske Willerslev
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

4.  Fifty thousand years of Arctic vegetation and megafaunal diet.

Authors:  Eske Willerslev; John Davison; Mari Moora; Martin Zobel; Eric Coissac; Mary E Edwards; Eline D Lorenzen; Mette Vestergård; Galina Gussarova; James Haile; Joseph Craine; Ludovic Gielly; Sanne Boessenkool; Laura S Epp; Peter B Pearman; Rachid Cheddadi; David Murray; Kari Anne Bråthen; Nigel Yoccoz; Heather Binney; Corinne Cruaud; Patrick Wincker; Tomasz Goslar; Inger Greve Alsos; Eva Bellemain; Anne Krag Brysting; Reidar Elven; Jørn Henrik Sønstebø; Julian Murton; Andrei Sher; Morten Rasmussen; Regin Rønn; Tobias Mourier; Alan Cooper; Jeremy Austin; Per Möller; Duane Froese; Grant Zazula; François Pompanon; Delphine Rioux; Vincent Niderkorn; Alexei Tikhonov; Grigoriy Savvinov; Richard G Roberts; Ross D E MacPhee; M Thomas P Gilbert; Kurt H Kjær; Ludovic Orlando; Christian Brochmann; Pierre Taberlet
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5.  Resolving lost herbivore community structure using coprolites of four sympatric moa species (Aves: Dinornithiformes).

Authors:  Jamie R Wood; Janet M Wilmshurst; Sarah J Richardson; Nicolas J Rawlence; Steven J Wagstaff; Trevor H Worthy; Alan Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

Review 6.  Evolutionary Patterns and Processes: Lessons from Ancient DNA.

Authors:  Michela Leonardi; Pablo Librado; Clio Der Sarkissian; Mikkel Schubert; Ahmed H Alfarhan; Saleh A Alquraishi; Khaled A S Al-Rasheid; Cristina Gamba; Eske Willerslev; Ludovic Orlando
Journal:  Syst Biol       Date:  2017-01-01       Impact factor: 9.160

7.  High-resolution coproecology: using coprolites to reconstruct the habits and habitats of New Zealand's extinct upland moa (Megalapteryx didinus).

Authors:  Jamie R Wood; Janet M Wilmshurst; Steven J Wagstaff; Trevor H Worthy; Nicolas J Rawlence; Alan Cooper
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

8.  High-Throughput DNA sequencing of ancient wood.

Authors:  Stefanie Wagner; Frédéric Lagane; Andaine Seguin-Orlando; Mikkel Schubert; Thibault Leroy; Erwan Guichoux; Emilie Chancerel; Inger Bech-Hebelstrup; Vincent Bernard; Cyrille Billard; Yves Billaud; Matthias Bolliger; Christophe Croutsch; Katarina Čufar; Frédérique Eynaud; Karl Uwe Heussner; Joachim Köninger; Fabien Langenegger; Frédéric Leroy; Christine Lima; Nicoletta Martinelli; Garry Momber; André Billamboz; Oliver Nelle; Antoni Palomo; Raquel Piqué; Marianne Ramstein; Roswitha Schweichel; Harald Stäuble; Willy Tegel; Xavier Terradas; Florence Verdin; Christophe Plomion; Antoine Kremer; Ludovic Orlando
Journal:  Mol Ecol       Date:  2018-03-03       Impact factor: 6.185

9.  Detection of a diverse marine fish fauna using environmental DNA from seawater samples.

Authors:  Philip Francis Thomsen; Jos Kielgast; Lars Lønsmann Iversen; Peter Rask Møller; Morten Rasmussen; Eske Willerslev
Journal:  PLoS One       Date:  2012-08-29       Impact factor: 3.240

10.  Scrapheap challenge: a novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages.

Authors:  Dáithí C Murray; James Haile; Joe Dortch; Nicole E White; Dalal Haouchar; Matthew I Bellgard; Richard J Allcock; Gavin J Prideaux; Michael Bunce
Journal:  Sci Rep       Date:  2013-11-28       Impact factor: 4.379

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