Literature DB >> 22590431

Benzene-1,2-di(aminium) naphthalene-1,5-disulfonate methanol monosolvate trihydrate.

Shan Gao, Seik Weng Ng.   

Abstract

In the title salt, C(6)H(10)N(2) (2+)·C(10)H(6)O(6)S(2) (2-)·CH(3)OH·3H(2)O, the cation lies on a mirror plane and the anion on a center of inversion. One lattice water mol-ecule is located on a mirror plane, another is equally disordered over two sites. The methanol solvent mol-ecule is disordered about a mirror plane. In the crystal, the cations, anions, water and methanol mol-ecules are linked by O-H⋯O and N-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2012        PMID: 22590431      PMCID: PMC3344669          DOI: 10.1107/S1600536812018284

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For other diammonium napthalene-1,5-disulfonates, see: Wei (2011 ▶); Zhu et al. (2009 ▶).

Experimental

Crystal data

C6H10N2 2+·C10H6O6S2 2−·CH4O·3H2O M = 482.52 Monoclinic, a = 8.1727 (15) Å b = 13.681 (2) Å c = 9.5173 (15) Å β = 98.390 (5)° V = 1052.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.926, T max = 0.943 10378 measured reflections 2503 independent reflections 1935 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.176 S = 1.13 2503 reflections 174 parameters H-atom parameters constrained Δρmax = 0.85 e Å−3 Δρmin = −0.41 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812018284/xu5520sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812018284/xu5520Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812018284/xu5520Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H10N22+·C10H6O6S22·CH4O·3H2OF(000) = 508
Mr = 482.52Dx = 1.522 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybCell parameters from 6427 reflections
a = 8.1727 (15) Åθ = 3.1–27.5°
b = 13.681 (2) ŵ = 0.31 mm1
c = 9.5173 (15) ÅT = 293 K
β = 98.390 (5)°Prism, colorless
V = 1052.8 (3) Å30.25 × 0.22 × 0.19 mm
Z = 2
Rigaku R-AXIS RAPID IP diffractometer2503 independent reflections
Radiation source: fine-focus sealed tube1935 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
ω scanθmax = 27.5°, θmin = 3.1°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.926, Tmax = 0.943k = −16→17
10378 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.176H-atom parameters constrained
S = 1.13w = 1/[σ2(Fo2) + (0.0909P)2 + 0.6772P] where P = (Fo2 + 2Fc2)/3
2503 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.85 e Å3
0 restraintsΔρmin = −0.41 e Å3
xyzUiso*/UeqOcc. (<1)
S10.71163 (7)0.51770 (5)0.72850 (6)0.0322 (2)
O10.6469 (2)0.61258 (14)0.6776 (2)0.0425 (5)
O20.6097 (2)0.43755 (15)0.6701 (2)0.0443 (5)
O30.7450 (3)0.51585 (15)0.8836 (2)0.0433 (5)
O1w0.5509 (5)0.75001.2108 (4)0.0707 (10)
H1w0.49340.69981.19020.106*
N10.4198 (5)0.75000.7729 (4)0.0509 (9)
H110.37880.75000.85350.076*
H120.48090.80250.76850.076*
N20.4862 (4)0.75000.4847 (3)0.0368 (7)
H210.48670.75000.39230.055*
H220.53740.69750.52210.055*
C10.9077 (3)0.50513 (18)0.6689 (3)0.0300 (5)
C20.9198 (3)0.50489 (17)0.5204 (3)0.0292 (5)
C30.7803 (3)0.51357 (19)0.4131 (3)0.0338 (6)
H30.67520.51910.43880.041*
C40.7984 (3)0.5140 (2)0.2731 (3)0.0387 (6)
H4A0.70570.52070.20450.046*
C50.9552 (3)0.5044 (2)0.2309 (3)0.0373 (6)
H50.96590.50440.13490.045*
C60.2850 (5)0.75000.6545 (4)0.0354 (8)
C70.1240 (5)0.75000.6818 (5)0.0453 (10)
H70.10250.75000.77510.054*
C8−0.0050 (5)0.75000.5712 (6)0.0527 (11)
H8−0.11330.75000.59040.063*
C90.0245 (6)0.75000.4325 (5)0.0499 (10)
H9−0.06310.75000.35820.060*
C100.1866 (5)0.75000.4045 (4)0.0431 (9)
H100.20770.75000.31110.052*
C110.3153 (4)0.75000.5139 (4)0.0315 (7)
O40.7361 (8)0.6961 (4)1.0177 (6)0.0782 (17)0.50
H40.74260.64060.98120.117*0.50
C120.8778 (11)0.751 (2)1.0006 (8)0.090 (3)0.5
H12A0.87780.81101.05330.135*0.50
H12B0.87670.76580.90180.135*0.50
H12C0.97530.71431.03510.135*0.50
O2w0.4770 (6)0.6054 (4)0.9855 (5)0.0635 (13)0.50
H2w10.38970.63420.99870.095*0.50
H2w20.46370.54510.99550.095*0.50
O2w'0.2979 (7)0.6729 (4)1.0117 (5)0.0657 (13)0.50
H2w30.37890.63751.00010.099*0.50
H2w40.21960.63661.02710.099*0.50
U11U22U33U12U13U23
S10.0272 (4)0.0378 (4)0.0335 (4)0.0033 (2)0.0108 (2)0.0024 (2)
O10.0421 (11)0.0428 (11)0.0451 (10)0.0138 (9)0.0152 (8)0.0056 (9)
O20.0313 (10)0.0483 (12)0.0553 (12)−0.0061 (8)0.0127 (8)−0.0051 (10)
O30.0434 (11)0.0557 (12)0.0333 (10)0.0051 (9)0.0143 (8)0.0054 (9)
O1w0.086 (3)0.083 (3)0.0472 (18)0.0000.0224 (18)0.000
N10.044 (2)0.074 (3)0.0366 (17)0.0000.0125 (15)0.000
N20.0354 (17)0.0422 (17)0.0341 (16)0.0000.0096 (13)0.000
C10.0241 (12)0.0339 (12)0.0335 (13)0.0028 (9)0.0096 (9)0.0008 (10)
C20.0265 (13)0.0297 (12)0.0314 (12)0.0016 (9)0.0045 (9)0.0021 (10)
C30.0219 (12)0.0428 (14)0.0367 (13)0.0009 (10)0.0050 (10)0.0003 (11)
C40.0281 (13)0.0520 (17)0.0343 (14)0.0034 (11)−0.0007 (10)0.0015 (11)
C50.0339 (14)0.0480 (15)0.0299 (12)0.0026 (11)0.0045 (10)0.0024 (11)
C60.038 (2)0.0342 (18)0.0360 (18)0.0000.0101 (15)0.000
C70.043 (2)0.044 (2)0.054 (2)0.0000.0200 (19)0.000
C80.032 (2)0.048 (2)0.081 (3)0.0000.016 (2)0.000
C90.038 (2)0.045 (2)0.064 (3)0.000−0.0007 (19)0.000
C100.043 (2)0.045 (2)0.040 (2)0.0000.0021 (17)0.000
C110.0317 (18)0.0271 (16)0.0372 (18)0.0000.0100 (14)0.000
O40.098 (4)0.069 (3)0.079 (4)−0.002 (3)0.050 (3)−0.012 (3)
C120.097 (6)0.093 (6)0.086 (5)0.035 (14)0.031 (4)−0.009 (16)
O2w0.067 (3)0.060 (3)0.066 (3)0.004 (2)0.020 (2)0.002 (2)
O2w'0.071 (3)0.077 (3)0.051 (3)−0.010 (3)0.015 (2)0.011 (2)
S1—O21.439 (2)C6—C71.377 (5)
S1—O11.4578 (19)C6—C111.396 (5)
S1—O31.461 (2)C7—C81.377 (7)
S1—C11.785 (2)C7—H70.9300
O1w—H1w0.8391C8—C91.376 (7)
N1—C61.456 (5)C8—H80.9300
N1—H110.8800C9—C101.389 (6)
N1—H120.8800C9—H90.9300
N2—C111.463 (4)C10—C111.368 (5)
N2—H210.8800C10—H100.9300
N2—H220.8800O4—C121.41 (2)
C1—C5i1.367 (4)O4—H40.8400
C1—C21.430 (3)C12—H12A0.9600
C2—C31.420 (4)C12—H12B0.9600
C2—C2i1.428 (5)C12—H12C0.9600
C3—C41.362 (4)O2w—H2w10.8401
C3—H30.9300O2w—H2w20.8400
C4—C51.404 (4)O2w—H2w30.9423
C4—H4A0.9300O2w'—H2w10.9412
C5—C1i1.367 (4)O2w'—H2w30.8400
C5—H50.9300O2w'—H2w40.8400
O2—S1—O1112.86 (13)C1i—C5—H5120.1
O2—S1—O3112.92 (12)C4—C5—H5120.1
O1—S1—O3110.88 (12)C7—C6—C11119.2 (4)
O2—S1—C1107.45 (12)C7—C6—N1119.3 (3)
O1—S1—C1106.22 (12)C11—C6—N1121.5 (3)
O3—S1—C1105.98 (12)C8—C7—C6120.1 (4)
C6—N1—H11109.5C8—C7—H7119.9
C6—N1—H12109.5C6—C7—H7119.9
H11—N1—H12109.5C9—C8—C7120.8 (4)
C11—N2—H21109.5C9—C8—H8119.6
C11—N2—H22109.5C7—C8—H8119.6
H21—N2—H22109.5C8—C9—C10119.3 (4)
C5i—C1—C2121.4 (2)C8—C9—H9120.3
C5i—C1—S1118.00 (19)C10—C9—H9120.3
C2—C1—S1120.56 (19)C11—C10—C9120.2 (4)
C3—C2—C2i119.0 (3)C11—C10—H10119.9
C3—C2—C1123.1 (2)C9—C10—H10119.9
C2i—C2—C1117.9 (3)C10—C11—C6120.4 (3)
C4—C3—C2120.9 (2)C10—C11—N2120.3 (3)
C4—C3—H3119.6C6—C11—N2119.3 (3)
C2—C3—H3119.6H2w1—O2w—H2w2108.5
C3—C4—C5120.9 (2)H2w2—O2w—H2w3108.3
C3—C4—H4A119.5H2w1—O2w'—H2w4109.5
C5—C4—H4A119.5H2w3—O2w'—H2w4108.5
C1i—C5—C4119.9 (2)
O2—S1—C1—C5i−120.4 (2)C3—C4—C5—C1i−0.3 (4)
O1—S1—C1—C5i118.6 (2)C11—C6—C7—C80.000 (2)
O3—S1—C1—C5i0.6 (3)N1—C6—C7—C8180.000 (1)
O2—S1—C1—C259.5 (2)C6—C7—C8—C90.000 (2)
O1—S1—C1—C2−61.5 (2)C7—C8—C9—C100.000 (2)
O3—S1—C1—C2−179.51 (19)C8—C9—C10—C110.000 (1)
C5i—C1—C2—C3179.3 (3)C9—C10—C11—C60.0
S1—C1—C2—C3−0.5 (3)C9—C10—C11—N2180.0
C5i—C1—C2—C2i−0.5 (4)C7—C6—C11—C100.000 (1)
S1—C1—C2—C2i179.7 (2)N1—C6—C11—C10180.000 (1)
C2i—C2—C3—C4−0.9 (4)C7—C6—C11—N2180.000 (1)
C1—C2—C3—C4179.3 (2)N1—C6—C11—N20.000 (1)
C2—C3—C4—C50.9 (4)
D—H···AD—HH···AD···AD—H···A
O4—H4···O30.841.942.783 (6)175
O1w—H1w···O2w0.842.322.915 (6)128
O1w—H1w···O2w0.842.192.799 (7)130
O2w—H2w2···O3ii0.842.352.873 (5)121
O2w′—H2w4···O3ii0.842.252.808 (6)124
N1—H12···O1iii0.882.072.880 (3)153
N1—H11···O2w0.882.032.816 (5)149
N2—H22···O10.881.992.815 (3)156
N2—H21···O1wiv0.881.882.735 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O30.841.942.783 (6)175
O1w—H1w⋯O2w0.842.322.915 (6)128
O1w—H1w⋯O2w0.842.192.799 (7)130
O2w—H2w2⋯O3i0.842.352.873 (5)121
O2w′—H2w4⋯O3i0.842.252.808 (6)124
N1—H12⋯O1ii0.882.072.880 (3)153
N1—H11⋯O2w0.882.032.816 (5)149
N2—H22⋯O10.881.992.815 (3)156
N2—H21⋯O1wiii0.881.882.735 (4)164

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Ethane-1,2-diammonium naphthalene-1,5-disulfonate.

Authors:  Zhi-Biao Zhu; Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-07

3.  Piperazine-1,4-diium naphthalene-1,5-disulfonate.

Authors:  Bin Wei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  3 in total
  1 in total

1.  Bis(3-amino-propan-1-aminium) naphthalene-1,5-disulfonate dihydrate.

Authors:  Shan Gao; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.