Literature DB >> 22590396

2-Amino-6-(dimethyl-amino)pyridine-3,5-dicarbonitrile.

Shaaban K Mohamed, Ahmed M Soliman, Eman M M Abdel-Raheem, Sohail Saeed, Wing-Tak Wong.   

Abstract

The title compound, C(9)H(9)N(5), is slightly twisted from planarity, with a maximum deviation of 0.0285 (13) Å from the pyridine plane for the C atom bearing the amino group. The cyano groups are on different sides of the pyridine plane, with C- and N-atom deviations of 0.072 (3)/0.124 (4) and -0.228 (4)/-0.409 (5) Å from the pyridine plane. In the crystal, N-H⋯N and C-H⋯N hydrogen bonds connect the mol-ecules into zigzag chains running along the c axis.

Entities:  

Year:  2012        PMID: 22590396      PMCID: PMC3344634          DOI: 10.1107/S1600536812017278

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of similar structures, see: Horton et al. (2012a ▶,b ▶); Soliman et al. (2012 ▶). For the biological significance of cyano­amino pyridines, see: Al-Haiza et al. (2003 ▶); Bhalerao & Krishnaiah (1995 ▶); Deo et al. (1990 ▶); Murata et al. (2003 ▶); Konda et al. (2010 ▶); Altomare et al. (2000 ▶); Hosni & Abdulla (2008 ▶); Shishoo et al. (1983 ▶).

Experimental

Crystal data

C9H9N5 M = 187.21 Monoclinic, a = 28.667 (7) Å b = 3.9702 (10) Å c = 17.950 (4) Å β = 112.920 (3)° V = 1881.7 (8) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.32 × 0.21 × 0.03 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.972, T max = 0.997 4846 measured reflections 1658 independent reflections 1173 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.147 S = 1.03 1658 reflections 138 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017278/im2369sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017278/im2369Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017278/im2369Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9N5F(000) = 784
Mr = 187.21Dx = 1.322 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4846 reflections
a = 28.667 (7) Åθ = 3.1–25.0°
b = 3.9702 (10) ŵ = 0.09 mm1
c = 17.950 (4) ÅT = 296 K
β = 112.920 (3)°Plate, yellow
V = 1881.7 (8) Å30.32 × 0.21 × 0.03 mm
Z = 8
Bruker SMART 1000 CCD diffractometer1658 independent reflections
Radiation source: fine-focus sealed tube1173 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
ω and φ scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −33→34
Tmin = 0.972, Tmax = 0.997k = −4→4
4846 measured reflectionsl = −21→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0915P)2 + 0.1839P] where P = (Fo2 + 2Fc2)/3
1658 reflections(Δ/σ)max < 0.001
138 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.07712 (6)0.0877 (4)0.27256 (9)0.0417 (5)
N20.00997 (6)0.2230 (6)0.15638 (13)0.0573 (6)
H1−0.0050 (9)0.284 (6)0.1053 (17)0.068 (8)*
H2−0.0096 (12)0.128 (8)0.1777 (19)0.094 (9)*
N30.05670 (8)0.6406 (6)0.02533 (12)0.0669 (6)
N40.25896 (8)0.0677 (9)0.35083 (15)0.1042 (10)
N50.14100 (6)−0.0606 (5)0.39210 (10)0.0488 (5)
C10.06018 (7)0.2187 (5)0.19854 (12)0.0415 (5)
C20.09339 (7)0.3580 (5)0.16489 (12)0.0431 (5)
C30.14482 (7)0.3269 (6)0.20982 (13)0.0499 (6)
H30.16760.40790.18870.060*
C40.16300 (7)0.1796 (5)0.28473 (13)0.0463 (5)
C50.12699 (7)0.0699 (5)0.31732 (12)0.0413 (5)
C60.07369 (8)0.5132 (6)0.08746 (14)0.0498 (6)
C70.21622 (9)0.1175 (7)0.32283 (15)0.0673 (7)
C80.18827 (9)0.0208 (8)0.45832 (15)0.0782 (8)
H8A0.18280.03560.50770.117*
H8B0.20060.23280.44780.117*
H8C0.2127−0.15200.46340.117*
C90.10351 (8)−0.2200 (6)0.41700 (13)0.0561 (6)
H9A0.1197−0.38820.45720.084*
H9B0.0778−0.32380.37100.084*
H9C0.0884−0.05300.43920.084*
U11U22U33U12U13U23
N10.0341 (9)0.0539 (10)0.0397 (10)−0.0009 (7)0.0172 (7)−0.0014 (8)
N20.0344 (10)0.0948 (16)0.0427 (12)−0.0056 (9)0.0150 (9)0.0117 (11)
N30.0644 (13)0.0872 (15)0.0559 (13)−0.0010 (11)0.0308 (11)0.0131 (12)
N40.0412 (12)0.175 (3)0.0971 (19)0.0216 (15)0.0270 (12)−0.0016 (19)
N50.0376 (9)0.0639 (11)0.0435 (10)0.0045 (8)0.0142 (8)0.0037 (9)
C10.0364 (10)0.0501 (12)0.0411 (12)−0.0021 (8)0.0186 (9)−0.0048 (9)
C20.0404 (11)0.0522 (12)0.0425 (12)−0.0026 (9)0.0224 (9)−0.0020 (10)
C30.0419 (12)0.0610 (13)0.0572 (14)−0.0054 (9)0.0307 (11)−0.0060 (11)
C40.0332 (11)0.0580 (13)0.0515 (13)0.0009 (9)0.0205 (9)−0.0041 (11)
C50.0348 (10)0.0455 (11)0.0449 (12)0.0010 (8)0.0169 (9)−0.0067 (9)
C60.0468 (12)0.0611 (14)0.0509 (14)−0.0040 (10)0.0292 (11)−0.0023 (12)
C70.0445 (14)0.0956 (19)0.0682 (17)0.0067 (12)0.0288 (12)−0.0019 (14)
C80.0492 (14)0.108 (2)0.0642 (17)0.0041 (14)0.0074 (12)0.0105 (16)
C90.0532 (13)0.0662 (14)0.0575 (14)0.0078 (11)0.0310 (12)0.0106 (12)
N1—C11.330 (2)C2—C61.421 (3)
N1—C51.341 (2)C3—C41.370 (3)
N2—C11.340 (3)C3—H30.9300
N2—H10.88 (3)C4—C71.429 (3)
N2—H20.88 (3)C4—C51.438 (3)
N3—C61.146 (3)C8—H8A0.9600
N4—C71.146 (3)C8—H8B0.9600
N5—C51.346 (3)C8—H8C0.9600
N5—C81.449 (3)C9—H9A0.9600
N5—C91.459 (3)C9—H9B0.9600
C1—C21.423 (3)C9—H9C0.9600
C2—C31.383 (3)
C1—N1—C5120.56 (16)C7—C4—C5123.7 (2)
C1—N2—H1124.9 (15)N1—C5—N5116.88 (16)
C1—N2—H2118 (2)N1—C5—C4120.45 (18)
H1—N2—H2116 (3)N5—C5—C4122.66 (18)
C5—N5—C8123.56 (19)N3—C6—C2178.3 (2)
C5—N5—C9120.21 (17)N4—C7—C4177.7 (3)
C8—N5—C9114.24 (18)N5—C8—H8A109.5
N1—C1—N2117.60 (18)N5—C8—H8B109.5
N1—C1—C2122.11 (18)H8A—C8—H8B109.5
N2—C1—C2120.28 (19)N5—C8—H8C109.5
C3—C2—C6122.45 (17)H8A—C8—H8C109.5
C3—C2—C1117.08 (19)H8B—C8—H8C109.5
C6—C2—C1120.45 (17)N5—C9—H9A109.5
C4—C3—C2121.48 (18)N5—C9—H9B109.5
C4—C3—H3119.3H9A—C9—H9B109.5
C2—C3—H3119.3N5—C9—H9C109.5
C3—C4—C7118.05 (19)H9A—C9—H9C109.5
C3—C4—C5118.02 (18)H9B—C9—H9C109.5
D—H···AD—HH···AD···AD—H···A
N2—H1···N3i0.88 (3)2.25 (3)3.119 (3)167 (2)
N2—H2···N1ii0.88 (3)2.43 (3)3.260 (3)158 (3)
C3—H3···N4iii0.932.553.471 (4)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯N3i0.88 (3)2.25 (3)3.119 (3)167 (2)
N2—H2⋯N1ii0.88 (3)2.43 (3)3.260 (3)158 (3)
C3—H3⋯N4iii0.932.553.471 (4)170

Symmetry codes: (i) ; (ii) ; (iii) .

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