| Literature DB >> 22590396 |
Shaaban K Mohamed, Ahmed M Soliman, Eman M M Abdel-Raheem, Sohail Saeed, Wing-Tak Wong.
Abstract
The title compound, C(9)H(9)N(5), is slightly twisted from planarity, with a maximum deviation of 0.0285 (13) Å from the pyridine plane for the C atom bearing the amino group. The cyano groups are on different sides of the pyridine plane, with C- and N-atom deviations of 0.072 (3)/0.124 (4) and -0.228 (4)/-0.409 (5) Å from the pyridine plane. In the crystal, N-H⋯N and C-H⋯N hydrogen bonds connect the mol-ecules into zigzag chains running along the c axis.Entities:
Year: 2012 PMID: 22590396 PMCID: PMC3344634 DOI: 10.1107/S1600536812017278
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H9N5 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 4846 reflections |
| θ = 3.1–25.0° | |
| µ = 0.09 mm−1 | |
| β = 112.920 (3)° | Plate, yellow |
| 0.32 × 0.21 × 0.03 mm | |
| Bruker SMART 1000 CCD diffractometer | 1658 independent reflections |
| Radiation source: fine-focus sealed tube | 1173 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 25.0°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 4846 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1658 reflections | (Δ/σ)max < 0.001 |
| 138 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.07712 (6) | 0.0877 (4) | 0.27256 (9) | 0.0417 (5) | |
| N2 | 0.00997 (6) | 0.2230 (6) | 0.15638 (13) | 0.0573 (6) | |
| H1 | −0.0050 (9) | 0.284 (6) | 0.1053 (17) | 0.068 (8)* | |
| H2 | −0.0096 (12) | 0.128 (8) | 0.1777 (19) | 0.094 (9)* | |
| N3 | 0.05670 (8) | 0.6406 (6) | 0.02533 (12) | 0.0669 (6) | |
| N4 | 0.25896 (8) | 0.0677 (9) | 0.35083 (15) | 0.1042 (10) | |
| N5 | 0.14100 (6) | −0.0606 (5) | 0.39210 (10) | 0.0488 (5) | |
| C1 | 0.06018 (7) | 0.2187 (5) | 0.19854 (12) | 0.0415 (5) | |
| C2 | 0.09339 (7) | 0.3580 (5) | 0.16489 (12) | 0.0431 (5) | |
| C3 | 0.14482 (7) | 0.3269 (6) | 0.20982 (13) | 0.0499 (6) | |
| H3 | 0.1676 | 0.4079 | 0.1887 | 0.060* | |
| C4 | 0.16300 (7) | 0.1796 (5) | 0.28473 (13) | 0.0463 (5) | |
| C5 | 0.12699 (7) | 0.0699 (5) | 0.31732 (12) | 0.0413 (5) | |
| C6 | 0.07369 (8) | 0.5132 (6) | 0.08746 (14) | 0.0498 (6) | |
| C7 | 0.21622 (9) | 0.1175 (7) | 0.32283 (15) | 0.0673 (7) | |
| C8 | 0.18827 (9) | 0.0208 (8) | 0.45832 (15) | 0.0782 (8) | |
| H8A | 0.1828 | 0.0356 | 0.5077 | 0.117* | |
| H8B | 0.2006 | 0.2328 | 0.4478 | 0.117* | |
| H8C | 0.2127 | −0.1520 | 0.4634 | 0.117* | |
| C9 | 0.10351 (8) | −0.2200 (6) | 0.41700 (13) | 0.0561 (6) | |
| H9A | 0.1197 | −0.3882 | 0.4572 | 0.084* | |
| H9B | 0.0778 | −0.3238 | 0.3710 | 0.084* | |
| H9C | 0.0884 | −0.0530 | 0.4392 | 0.084* |
| N1 | 0.0341 (9) | 0.0539 (10) | 0.0397 (10) | −0.0009 (7) | 0.0172 (7) | −0.0014 (8) |
| N2 | 0.0344 (10) | 0.0948 (16) | 0.0427 (12) | −0.0056 (9) | 0.0150 (9) | 0.0117 (11) |
| N3 | 0.0644 (13) | 0.0872 (15) | 0.0559 (13) | −0.0010 (11) | 0.0308 (11) | 0.0131 (12) |
| N4 | 0.0412 (12) | 0.175 (3) | 0.0971 (19) | 0.0216 (15) | 0.0270 (12) | −0.0016 (19) |
| N5 | 0.0376 (9) | 0.0639 (11) | 0.0435 (10) | 0.0045 (8) | 0.0142 (8) | 0.0037 (9) |
| C1 | 0.0364 (10) | 0.0501 (12) | 0.0411 (12) | −0.0021 (8) | 0.0186 (9) | −0.0048 (9) |
| C2 | 0.0404 (11) | 0.0522 (12) | 0.0425 (12) | −0.0026 (9) | 0.0224 (9) | −0.0020 (10) |
| C3 | 0.0419 (12) | 0.0610 (13) | 0.0572 (14) | −0.0054 (9) | 0.0307 (11) | −0.0060 (11) |
| C4 | 0.0332 (11) | 0.0580 (13) | 0.0515 (13) | 0.0009 (9) | 0.0205 (9) | −0.0041 (11) |
| C5 | 0.0348 (10) | 0.0455 (11) | 0.0449 (12) | 0.0010 (8) | 0.0169 (9) | −0.0067 (9) |
| C6 | 0.0468 (12) | 0.0611 (14) | 0.0509 (14) | −0.0040 (10) | 0.0292 (11) | −0.0023 (12) |
| C7 | 0.0445 (14) | 0.0956 (19) | 0.0682 (17) | 0.0067 (12) | 0.0288 (12) | −0.0019 (14) |
| C8 | 0.0492 (14) | 0.108 (2) | 0.0642 (17) | 0.0041 (14) | 0.0074 (12) | 0.0105 (16) |
| C9 | 0.0532 (13) | 0.0662 (14) | 0.0575 (14) | 0.0078 (11) | 0.0310 (12) | 0.0106 (12) |
| N1—C1 | 1.330 (2) | C2—C6 | 1.421 (3) |
| N1—C5 | 1.341 (2) | C3—C4 | 1.370 (3) |
| N2—C1 | 1.340 (3) | C3—H3 | 0.9300 |
| N2—H1 | 0.88 (3) | C4—C7 | 1.429 (3) |
| N2—H2 | 0.88 (3) | C4—C5 | 1.438 (3) |
| N3—C6 | 1.146 (3) | C8—H8A | 0.9600 |
| N4—C7 | 1.146 (3) | C8—H8B | 0.9600 |
| N5—C5 | 1.346 (3) | C8—H8C | 0.9600 |
| N5—C8 | 1.449 (3) | C9—H9A | 0.9600 |
| N5—C9 | 1.459 (3) | C9—H9B | 0.9600 |
| C1—C2 | 1.423 (3) | C9—H9C | 0.9600 |
| C2—C3 | 1.383 (3) | ||
| C1—N1—C5 | 120.56 (16) | C7—C4—C5 | 123.7 (2) |
| C1—N2—H1 | 124.9 (15) | N1—C5—N5 | 116.88 (16) |
| C1—N2—H2 | 118 (2) | N1—C5—C4 | 120.45 (18) |
| H1—N2—H2 | 116 (3) | N5—C5—C4 | 122.66 (18) |
| C5—N5—C8 | 123.56 (19) | N3—C6—C2 | 178.3 (2) |
| C5—N5—C9 | 120.21 (17) | N4—C7—C4 | 177.7 (3) |
| C8—N5—C9 | 114.24 (18) | N5—C8—H8A | 109.5 |
| N1—C1—N2 | 117.60 (18) | N5—C8—H8B | 109.5 |
| N1—C1—C2 | 122.11 (18) | H8A—C8—H8B | 109.5 |
| N2—C1—C2 | 120.28 (19) | N5—C8—H8C | 109.5 |
| C3—C2—C6 | 122.45 (17) | H8A—C8—H8C | 109.5 |
| C3—C2—C1 | 117.08 (19) | H8B—C8—H8C | 109.5 |
| C6—C2—C1 | 120.45 (17) | N5—C9—H9A | 109.5 |
| C4—C3—C2 | 121.48 (18) | N5—C9—H9B | 109.5 |
| C4—C3—H3 | 119.3 | H9A—C9—H9B | 109.5 |
| C2—C3—H3 | 119.3 | N5—C9—H9C | 109.5 |
| C3—C4—C7 | 118.05 (19) | H9A—C9—H9C | 109.5 |
| C3—C4—C5 | 118.02 (18) | H9B—C9—H9C | 109.5 |
| H··· | ||||
| N2—H1···N3i | 0.88 (3) | 2.25 (3) | 3.119 (3) | 167 (2) |
| N2—H2···N1ii | 0.88 (3) | 2.43 (3) | 3.260 (3) | 158 (3) |
| C3—H3···N4iii | 0.93 | 2.55 | 3.471 (4) | 170 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H1⋯N3i | 0.88 (3) | 2.25 (3) | 3.119 (3) | 167 (2) |
| N2—H2⋯N1ii | 0.88 (3) | 2.43 (3) | 3.260 (3) | 158 (3) |
| C3—H3⋯N4iii | 0.93 | 2.55 | 3.471 (4) | 170 |
Symmetry codes: (i) ; (ii) ; (iii) .