Literature DB >> 22590389

1-(Adamantan-1-yl)-3-(4-fluoro-phen-yl)thio-urea.

Güneş Demirtaş, Necmi Dege, Mona M Al-Shehri, Ali A El-Emam, Nasser R El-Brollosy, Orhan Büyükgüngör.   

Abstract

In the title mol-ecule, C(17)H(21)FN(2)S, the mean planes of the benzene ring and the thio-urea fragment form a dihedral angle of 61.93 (9)°. In the crystal, pairs of weak N-H⋯S inter-actions link the mol-ecules, forming inversion dimers.

Entities:  

Year:  2012        PMID: 22590389      PMCID: PMC3344627          DOI: 10.1107/S1600536812017515

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of adamantane and thio­urea derivatives, see: Vernier et al. (1969 ▶); El-Emam et al. (2004 ▶); Li et al. (2009 ▶); Hunter et al. (2008 ▶); Kadi et al. (2007 ▶, 2010 ▶). For the crystal structures of related adamantane deriv­atives, see: Kadi et al. (2011 ▶); Almutairi et al. (2012 ▶); Al-Abdullah et al. (2012 ▶).

Experimental

Crystal data

C17H21FN2S M = 304.42 Triclinic, a = 6.4274 (5) Å b = 11.4727 (9) Å c = 11.5870 (9) Å α = 113.510 (6)° β = 94.721 (6)° γ = 94.837 (6)° V = 774.39 (10) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.80 × 0.35 × 0.11 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.847, T max = 0.977 11154 measured reflections 3048 independent reflections 2224 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.118 S = 1.01 3048 reflections 190 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812017515/cv5285sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017515/cv5285Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017515/cv5285Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H21FN2SZ = 2
Mr = 304.42F(000) = 324
Triclinic, P1Dx = 1.306 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4274 (5) ÅCell parameters from 14319 reflections
b = 11.4727 (9) Åθ = 3.2–27.9°
c = 11.5870 (9) ŵ = 0.22 mm1
α = 113.510 (6)°T = 296 K
β = 94.721 (6)°Prism, colourless
γ = 94.837 (6)°0.80 × 0.35 × 0.11 mm
V = 774.39 (10) Å3
Stoe IPDS 2 diffractometer3048 independent reflections
Radiation source: fine-focus sealed tube2224 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.078
rotation method scansθmax = 26.0°, θmin = 3.2°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −7→7
Tmin = 0.847, Tmax = 0.977k = −14→14
11154 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0575P)2 + 0.0575P] where P = (Fo2 + 2Fc2)/3
3048 reflections(Δ/σ)max = 0.001
190 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3269 (3)0.96011 (19)0.2888 (2)0.0449 (5)
C20.4940 (4)1.0491 (2)0.3639 (2)0.0522 (6)
H20.49181.08990.45100.063*
C30.6639 (4)1.0781 (2)0.3108 (3)0.0603 (6)
H30.77541.13930.36080.072*
C40.6651 (4)1.0152 (2)0.1836 (3)0.0579 (6)
C50.5006 (4)0.9293 (2)0.1057 (2)0.0587 (6)
H50.50450.88940.01860.070*
C60.3282 (4)0.9030 (2)0.1589 (2)0.0538 (6)
H60.21250.84670.10730.065*
C70.0960 (3)0.80999 (19)0.3412 (2)0.0434 (5)
C80.2048 (3)0.58337 (18)0.25944 (19)0.0371 (4)
C9−0.0095 (3)0.50477 (19)0.1946 (2)0.0414 (5)
H9A−0.04490.51110.11450.050*
H9B−0.11780.53820.24810.050*
C100.0005 (3)0.3639 (2)0.1715 (2)0.0484 (6)
H10−0.13710.31390.13150.058*
C110.0577 (4)0.3544 (2)0.2966 (3)0.0555 (6)
H11A0.06170.26540.28210.067*
H11B−0.04820.38730.35210.067*
C120.2722 (4)0.4314 (2)0.3594 (3)0.0553 (6)
H120.30910.42420.43980.066*
C130.2620 (3)0.5721 (2)0.3845 (2)0.0479 (5)
H13A0.15720.60540.44070.057*
H13B0.39720.62210.42550.057*
C140.3707 (3)0.5295 (2)0.1712 (2)0.0467 (5)
H14A0.33510.53640.09140.056*
H14B0.50730.57890.20970.056*
C150.3806 (3)0.3894 (2)0.1469 (2)0.0524 (6)
H150.48800.35620.09120.063*
C160.1668 (3)0.3114 (2)0.0831 (3)0.0565 (6)
H16A0.17250.22190.06620.068*
H16B0.13050.31760.00300.068*
C170.4373 (3)0.3789 (2)0.2715 (3)0.0630 (7)
H17A0.57440.42690.31120.076*
H17B0.44430.28990.25630.076*
N10.1550 (3)0.92729 (17)0.34457 (19)0.0536 (5)
H10.08220.98730.38380.064*
N20.2119 (3)0.71831 (16)0.27757 (18)0.0471 (5)
H2A0.30690.74280.24100.057*
F10.8343 (3)1.04002 (17)0.12965 (18)0.0899 (6)
S1−0.10933 (9)0.78832 (5)0.41551 (6)0.0557 (2)
U11U22U33U12U13U23
C10.0514 (11)0.0311 (10)0.0520 (14)0.0071 (8)0.0101 (10)0.0159 (9)
C20.0629 (13)0.0420 (12)0.0466 (13)0.0011 (10)0.0050 (11)0.0140 (10)
C30.0571 (13)0.0512 (14)0.0647 (17)−0.0051 (11)0.0007 (12)0.0191 (12)
C40.0603 (14)0.0453 (12)0.0703 (17)0.0038 (10)0.0204 (12)0.0244 (12)
C50.0801 (16)0.0432 (12)0.0509 (15)0.0033 (11)0.0193 (13)0.0159 (11)
C60.0588 (13)0.0428 (12)0.0504 (14)−0.0041 (10)0.0040 (11)0.0119 (11)
C70.0427 (10)0.0373 (11)0.0453 (13)0.0058 (8)0.0080 (9)0.0110 (9)
C80.0326 (9)0.0344 (10)0.0412 (12)0.0041 (7)0.0065 (8)0.0121 (8)
C90.0341 (9)0.0443 (11)0.0417 (12)0.0075 (8)0.0021 (8)0.0134 (9)
C100.0326 (10)0.0395 (11)0.0594 (15)−0.0005 (8)0.0024 (9)0.0076 (10)
C110.0512 (12)0.0471 (12)0.0744 (17)0.0048 (10)0.0152 (12)0.0302 (12)
C120.0545 (13)0.0573 (14)0.0604 (15)0.0069 (10)−0.0038 (11)0.0328 (12)
C130.0424 (11)0.0506 (13)0.0446 (13)0.0009 (9)−0.0025 (10)0.0157 (10)
C140.0389 (10)0.0433 (11)0.0569 (14)0.0084 (8)0.0149 (10)0.0171 (10)
C150.0395 (11)0.0414 (11)0.0711 (17)0.0119 (9)0.0176 (11)0.0144 (11)
C160.0519 (12)0.0405 (12)0.0624 (16)0.0068 (10)0.0092 (11)0.0051 (11)
C170.0415 (12)0.0531 (14)0.098 (2)0.0128 (10)0.0018 (13)0.0353 (14)
N10.0594 (11)0.0350 (9)0.0655 (13)0.0110 (8)0.0234 (10)0.0158 (9)
N20.0465 (9)0.0376 (9)0.0614 (12)0.0091 (7)0.0235 (9)0.0207 (9)
F10.0811 (10)0.0808 (11)0.1042 (14)−0.0079 (8)0.0415 (10)0.0320 (10)
S10.0505 (3)0.0416 (3)0.0672 (4)0.0066 (2)0.0261 (3)0.0106 (3)
C1—C21.381 (3)C10—C161.533 (3)
C1—C61.383 (3)C10—H100.9800
C1—N11.421 (3)C11—C121.526 (3)
C2—C31.376 (3)C11—H11A0.9700
C2—H20.9300C11—H11B0.9700
C3—C41.359 (4)C12—C171.524 (3)
C3—H30.9300C12—C131.530 (3)
C4—F11.362 (3)C12—H120.9800
C4—C51.364 (4)C13—H13A0.9700
C5—C61.380 (3)C13—H13B0.9700
C5—H50.9300C14—C151.526 (3)
C6—H60.9300C14—H14A0.9700
C7—N21.345 (2)C14—H14B0.9700
C7—N11.351 (3)C15—C171.514 (4)
C7—S11.687 (2)C15—C161.527 (3)
C8—N21.473 (2)C15—H150.9800
C8—C131.524 (3)C16—H16A0.9700
C8—C141.533 (3)C16—H16B0.9700
C8—C91.535 (3)C17—H17A0.9700
C9—C101.537 (3)C17—H17B0.9700
C9—H9A0.9700N1—H10.8600
C9—H9B0.9700N2—H2A0.8600
C10—C111.514 (4)
C2—C1—C6119.4 (2)H11A—C11—H11B108.2
C2—C1—N1120.3 (2)C17—C12—C11109.3 (2)
C6—C1—N1120.3 (2)C17—C12—C13109.9 (2)
C3—C2—C1120.5 (2)C11—C12—C13109.09 (18)
C3—C2—H2119.7C17—C12—H12109.5
C1—C2—H2119.7C11—C12—H12109.5
C4—C3—C2118.5 (2)C13—C12—H12109.5
C4—C3—H3120.7C8—C13—C12109.58 (18)
C2—C3—H3120.7C8—C13—H13A109.8
C3—C4—F1119.4 (2)C12—C13—H13A109.8
C3—C4—C5122.7 (2)C8—C13—H13B109.8
F1—C4—C5117.8 (2)C12—C13—H13B109.8
C4—C5—C6118.5 (2)H13A—C13—H13B108.2
C4—C5—H5120.7C15—C14—C8110.05 (17)
C6—C5—H5120.7C15—C14—H14A109.7
C5—C6—C1120.2 (2)C8—C14—H14A109.7
C5—C6—H6119.9C15—C14—H14B109.7
C1—C6—H6119.9C8—C14—H14B109.7
N2—C7—N1115.40 (17)H14A—C14—H14B108.2
N2—C7—S1125.04 (16)C17—C15—C14109.59 (19)
N1—C7—S1119.56 (14)C17—C15—C16109.8 (2)
N2—C8—C13111.51 (17)C14—C15—C16109.42 (18)
N2—C8—C14105.19 (16)C17—C15—H15109.3
C13—C8—C14109.26 (17)C14—C15—H15109.3
N2—C8—C9112.54 (16)C16—C15—H15109.3
C13—C8—C9109.88 (16)C15—C16—C10108.83 (18)
C14—C8—C9108.27 (16)C15—C16—H16A109.9
C8—C9—C10109.31 (16)C10—C16—H16A109.9
C8—C9—H9A109.8C15—C16—H16B109.9
C10—C9—H9A109.8C10—C16—H16B109.9
C8—C9—H9B109.8H16A—C16—H16B108.3
C10—C9—H9B109.8C15—C17—C12109.70 (18)
H9A—C9—H9B108.3C15—C17—H17A109.7
C11—C10—C16109.86 (19)C12—C17—H17A109.7
C11—C10—C9109.71 (18)C15—C17—H17B109.7
C16—C10—C9109.11 (19)C12—C17—H17B109.7
C11—C10—H10109.4H17A—C17—H17B108.2
C16—C10—H10109.4C7—N1—C1125.69 (17)
C9—C10—H10109.4C7—N1—H1117.2
C10—C11—C12109.87 (19)C1—N1—H1117.2
C10—C11—H11A109.7C7—N2—C8131.37 (17)
C12—C11—H11A109.7C7—N2—H2A114.3
C10—C11—H11B109.7C8—N2—H2A114.3
C12—C11—H11B109.7
C6—C1—C2—C3−2.1 (3)C11—C12—C13—C8−60.2 (2)
N1—C1—C2—C3177.9 (2)N2—C8—C14—C15179.09 (18)
C1—C2—C3—C4−1.4 (4)C13—C8—C14—C1559.3 (2)
C2—C3—C4—F1−178.3 (2)C9—C8—C14—C15−60.4 (2)
C2—C3—C4—C53.3 (4)C8—C14—C15—C17−59.6 (2)
C3—C4—C5—C6−1.6 (4)C8—C14—C15—C1660.8 (3)
F1—C4—C5—C6179.9 (2)C17—C15—C16—C1059.9 (2)
C4—C5—C6—C1−1.9 (4)C14—C15—C16—C10−60.4 (3)
C2—C1—C6—C53.7 (3)C11—C10—C16—C15−59.5 (3)
N1—C1—C6—C5−176.2 (2)C9—C10—C16—C1560.9 (3)
N2—C8—C9—C10176.37 (17)C14—C15—C17—C1259.6 (2)
C13—C8—C9—C10−58.7 (2)C16—C15—C17—C12−60.6 (2)
C14—C8—C9—C1060.5 (2)C11—C12—C17—C1559.8 (3)
C8—C9—C10—C1159.0 (2)C13—C12—C17—C15−59.8 (3)
C8—C9—C10—C16−61.4 (2)N2—C7—N1—C1−0.8 (3)
C16—C10—C11—C1259.6 (2)S1—C7—N1—C1178.58 (18)
C9—C10—C11—C12−60.3 (2)C2—C1—N1—C7−117.2 (3)
C10—C11—C12—C17−59.4 (2)C6—C1—N1—C762.7 (3)
C10—C11—C12—C1360.7 (2)N1—C7—N2—C8176.0 (2)
N2—C8—C13—C12−174.86 (16)S1—C7—N2—C8−3.4 (4)
C14—C8—C13—C12−59.0 (2)C13—C8—N2—C7−64.7 (3)
C9—C8—C13—C1259.6 (2)C14—C8—N2—C7177.0 (2)
C17—C12—C13—C859.6 (2)C9—C8—N2—C759.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.862.673.3939 (19)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S1i0.862.673.3939 (19)142

Symmetry code: (i) .

  10 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The toxicologic and pharmacologic properties of amantadine hydrochloride.

Authors:  V G Vernier; J B Harmon; J M Stump; T E Lynes; J P Marvel; D H Smith
Journal:  Toxicol Appl Pharmacol       Date:  1969-11       Impact factor: 4.219

3.  Synthesis, antimicrobial and anti-inflammatory activities of novel 5-(1-adamantyl)-1,3,4-thiadiazole derivatives.

Authors:  Adnan A Kadi; Ebtehal S Al-Abdullah; Ihsan A Shehata; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Eur J Med Chem       Date:  2010-08-12       Impact factor: 6.514

4.  C-2-aryl O-substituted HI-236 derivatives as non-nucleoside HIV-1 reverse-transcriptase inhibitors.

Authors:  Roger Hunter; Yassir Younis; Clare I Muhanji; Tanith-Lea Curtin; Kevin J Naidoo; Melissa Petersen; Christopher M Bailey; Aravind Basavapathruni; Karen S Anderson
Journal:  Bioorg Med Chem       Date:  2008-11-01       Impact factor: 3.641

5.  Synthesis, antimicrobial, and anti-HIV-1 activity of certain 5-(1-adamantyl)-2-substituted thio-1,3,4-oxadiazoles and 5-(1-adamantyl)-3-substituted aminomethyl-1,3,4-oxadiazoline-2-thiones.

Authors:  Ali A El-Emam; Omar A Al-Deeb; Mohamed Al-Omar; Jochen Lehmann
Journal:  Bioorg Med Chem       Date:  2004-10-01       Impact factor: 3.641

6.  Discovery of dual inhibitors targeting both HIV-1 capsid and human cyclophilin A to inhibit the assembly and uncoating of the viral capsid.

Authors:  Jiebo Li; Zhiwu Tan; Shixing Tang; Indira Hewlett; Ruifang Pang; Meizi He; Shanshan He; Baohe Tian; Kan Chen; Ming Yang
Journal:  Bioorg Med Chem       Date:  2009-03-03       Impact factor: 3.641

7.  3-(Adamantan-1-yl)-4-phenyl-1-[(4-phenyl-piperazin-1-yl)meth-yl]-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Ebtehal S Al-Abdullah; Hanadi H Asiri; Ali El-Emam; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

8.  N'-(Adamantan-2-yl-idene)thio-phene-2-carbohydrazide.

Authors:  Adnan A Kadi; Amer M Alanzi; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

9.  3-(Adamantan-1-yl)-4-(prop-2-en-1-yl)-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Maha S Almutairi; Mona M Al-Shehri; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total
  1 in total

1.  Probing the Effect of Halogen Substituents (Br, Cl, and F) on the Non-covalent Interactions in 1-(Adamantan-1-yl)-3-arylthiourea Derivatives: A Theoretical Study.

Authors:  Lamya H Al-Wahaibi; Divya Sri Grandhi; Samar S Tawfik; Nora H Al-Shaalan; Mohammed A Elmorsy; Ali A El-Emam; M Judith Percino; Subbiah Thamotharan
Journal:  ACS Omega       Date:  2021-02-10
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.