Literature DB >> 22220129

N'-(Adamantan-2-yl-idene)thio-phene-2-carbohydrazide.

Adnan A Kadi, Amer M Alanzi, Ali A El-Emam, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title mol-ecule, C(15)H(18)N(2)OS, a small twist is noted, with the dihedral angle between the central carbohydrazone residue (r.m.s. deviation = 0.029 Å) and the thio-phene ring being 12.47 (10)°. The syn arrangement of the amide H and carbonyl O atoms allows for the formation of centrosymmetric dimers via N-H⋯O hydrogen bonds. These are linked in the three-dimensional structure by C-H⋯π inter-actions. The thio-phene ring is disordered over two co-planar orientations, the major component having a site-occupancy factor of 0.833 (2).

Entities:  

Year:  2011        PMID: 22220129      PMCID: PMC3247511          DOI: 10.1107/S1600536811044758

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of adamantane derivatives see: Vernier et al. (1969 ▶); El-Emam et al. (2004 ▶). For background to our work into the biological activity of adamantane derivatives, see: Kadi et al. (2010 ▶); Al-Omar et al. (2010 ▶). For a related structure, see: Al-Tamimi et al. (2010 ▶).

Experimental

Crystal data

C15H18N2OS M = 274.37 Monoclinic, a = 16.7262 (2) Å b = 12.5663 (1) Å c = 13.5562 (2) Å β = 102.473 (1)° V = 2782.08 (6) Å3 Z = 8 Cu Kα radiation μ = 2.01 mm−1 T = 100 K 0.30 × 0.25 × 0.20 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.584, T max = 0.690 5687 measured reflections 2849 independent reflections 2671 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.087 S = 1.04 2849 reflections 189 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.39 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811044758/hg5127sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811044758/hg5127Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811044758/hg5127Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H18N2OSF(000) = 1168
Mr = 274.37Dx = 1.310 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -C 2ycCell parameters from 4116 reflections
a = 16.7262 (2) Åθ = 3.3–76.3°
b = 12.5663 (1) ŵ = 2.01 mm1
c = 13.5562 (2) ÅT = 100 K
β = 102.473 (1)°Prism, colourless
V = 2782.08 (6) Å30.30 × 0.25 × 0.20 mm
Z = 8
Agilent SuperNova Dual diffractometer with an Atlas detector2849 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2671 reflections with I > 2σ(I)
MirrorRint = 0.015
Detector resolution: 10.4041 pixels mm-1θmax = 76.5°, θmin = 4.4°
ω scanh = −20→21
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −15→15
Tmin = 0.584, Tmax = 0.690l = −16→11
5687 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0511P)2 + 1.8544P] where P = (Fo2 + 2Fc2)/3
2849 reflections(Δ/σ)max = 0.001
189 parametersΔρmax = 0.38 e Å3
10 restraintsΔρmin = −0.39 e Å3
xyzUiso*/UeqOcc. (<1)
S10.32529 (2)0.46310 (4)0.24150 (3)0.01360 (14)0.833 (2)
C10.26341 (15)0.55387 (19)0.1659 (2)0.0172 (5)0.833 (2)
H1A0.27770.58840.10980.021*0.833 (2)
C20.1909 (2)0.5709 (3)0.1958 (2)0.0187 (4)0.833 (2)
H20.14930.61910.16460.022*0.833 (2)
C30.18762 (10)0.5073 (2)0.2781 (2)0.0223 (5)0.833 (2)
H30.14170.50810.30880.027*0.833 (2)
S1'0.16790 (19)0.5096 (3)0.2790 (2)0.01360 (14)0.167 (2)
C1'0.2016 (12)0.5693 (15)0.1820 (12)0.0172 (5)0.167 (2)
H1'0.17030.62040.13840.021*0.167 (2)
C2'0.2765 (11)0.5375 (13)0.1731 (14)0.0187 (4)0.167 (2)
H2'0.30440.56170.12340.022*0.167 (2)
C3'0.3071 (7)0.4624 (12)0.2493 (10)0.0223 (5)0.167 (2)
H3'0.35880.42850.25650.027*0.167 (2)
O10.19394 (5)0.34953 (7)0.42862 (7)0.0180 (2)
N10.32838 (6)0.32219 (8)0.44331 (8)0.0143 (2)
H10.3254 (10)0.2681 (13)0.4887 (12)0.023 (4)*
N20.39858 (6)0.33902 (8)0.40601 (7)0.0147 (2)
C40.25352 (7)0.44346 (9)0.31283 (8)0.0135 (2)
C50.25708 (7)0.36818 (9)0.39748 (9)0.0137 (2)
C60.46677 (7)0.30469 (9)0.45855 (9)0.0137 (2)
C70.54146 (7)0.31718 (10)0.41432 (9)0.0172 (3)
H70.52740.35750.34930.021*
C80.57170 (8)0.20454 (11)0.39590 (10)0.0216 (3)
H8A0.52900.16660.34640.026*
H8B0.62140.20950.36760.026*
C90.59118 (7)0.14246 (10)0.49565 (10)0.0194 (3)
H90.61070.06940.48350.023*
C100.51402 (7)0.13459 (10)0.53943 (10)0.0195 (3)
H10A0.52650.09410.60350.023*
H10B0.47060.09620.49140.023*
C110.48369 (7)0.24706 (10)0.55881 (9)0.0147 (2)
H110.43290.24280.58620.018*
C120.55174 (7)0.30665 (11)0.63301 (9)0.0193 (3)
H12A0.53280.37920.64490.023*
H12B0.56440.26870.69850.023*
C130.62905 (7)0.31363 (10)0.58972 (9)0.0177 (3)
H130.67310.35140.63880.021*
C140.60877 (7)0.37598 (10)0.49038 (10)0.0196 (3)
H14A0.65850.38300.46230.024*
H14B0.58970.44830.50280.024*
C150.65806 (7)0.20126 (10)0.57098 (9)0.0184 (3)
H15A0.67120.16150.63550.022*
H15B0.70840.20560.54390.022*
U11U22U33U12U13U23
S10.0146 (3)0.0164 (2)0.0113 (2)−0.00024 (18)0.00607 (15)0.00223 (12)
C10.0211 (13)0.0172 (11)0.0118 (8)0.0019 (8)0.0004 (8)0.0070 (7)
C20.0190 (12)0.0181 (7)0.0184 (12)0.0026 (7)0.0026 (6)0.0013 (8)
C30.0147 (11)0.0256 (8)0.0287 (8)−0.0040 (10)0.0096 (9)−0.0030 (7)
S1'0.0146 (3)0.0164 (2)0.0113 (2)−0.00024 (18)0.00607 (15)0.00223 (12)
C1'0.0211 (13)0.0172 (11)0.0118 (8)0.0019 (8)0.0004 (8)0.0070 (7)
C2'0.0190 (12)0.0181 (7)0.0184 (12)0.0026 (7)0.0026 (6)0.0013 (8)
C3'0.0147 (11)0.0256 (8)0.0287 (8)−0.0040 (10)0.0096 (9)−0.0030 (7)
O10.0134 (4)0.0194 (4)0.0217 (4)0.0002 (3)0.0053 (3)0.0062 (3)
N10.0125 (5)0.0153 (5)0.0153 (5)0.0001 (4)0.0036 (4)0.0035 (4)
N20.0139 (5)0.0153 (5)0.0159 (5)0.0005 (4)0.0052 (4)0.0016 (4)
C40.0149 (5)0.0128 (5)0.0125 (5)−0.0014 (4)0.0024 (4)−0.0010 (4)
C50.0141 (5)0.0118 (5)0.0147 (5)−0.0010 (4)0.0021 (4)−0.0015 (4)
C60.0149 (5)0.0128 (5)0.0138 (5)0.0000 (4)0.0041 (4)0.0006 (4)
C70.0160 (6)0.0213 (6)0.0160 (6)0.0026 (4)0.0068 (4)0.0059 (5)
C80.0214 (6)0.0266 (7)0.0176 (6)0.0041 (5)0.0062 (5)−0.0034 (5)
C90.0187 (6)0.0145 (6)0.0249 (6)0.0031 (4)0.0045 (5)0.0001 (5)
C100.0167 (6)0.0152 (6)0.0251 (6)−0.0025 (4)0.0009 (5)0.0059 (5)
C110.0115 (5)0.0189 (6)0.0141 (5)−0.0009 (4)0.0035 (4)0.0040 (4)
C120.0155 (6)0.0274 (7)0.0148 (6)−0.0014 (5)0.0029 (5)−0.0027 (5)
C130.0130 (5)0.0202 (6)0.0196 (6)−0.0035 (4)0.0028 (4)−0.0011 (5)
C140.0153 (5)0.0161 (6)0.0289 (7)−0.0009 (4)0.0081 (5)0.0051 (5)
C150.0132 (5)0.0204 (6)0.0215 (6)0.0012 (4)0.0037 (5)0.0060 (5)
S1—C41.7142 (12)C7—C81.5415 (18)
S1—C11.7215 (15)C7—C141.5412 (17)
C1—C21.377 (2)C7—H71.0000
C1—H1A0.9500C8—C91.5340 (18)
C2—C31.382 (3)C8—H8A0.9900
C2—H20.9500C8—H8B0.9900
C3—C41.362 (2)C9—C151.5319 (17)
C3—H30.9500C9—C101.5358 (17)
S1'—C41.634 (3)C9—H91.0000
S1'—C1'1.712 (9)C10—C111.5432 (17)
C1'—C2'1.344 (9)C10—H10A0.9900
C1'—H1'0.9500C10—H10B0.9900
C2'—C3'1.411 (10)C11—C121.5406 (16)
C2'—H2'0.9500C11—H111.0000
C3'—C41.391 (8)C12—C131.5336 (16)
C3'—H3'0.9500C12—H12A0.9900
O1—C51.2414 (14)C12—H12B0.9900
N1—C51.3499 (15)C13—C141.5313 (17)
N1—N21.3912 (13)C13—C151.5321 (17)
N1—H10.926 (17)C13—H131.0000
N2—C61.2820 (15)C14—H14A0.9900
C4—C51.4784 (16)C14—H14B0.9900
C6—C71.5062 (15)C15—H15A0.9900
C6—C111.5118 (15)C15—H15B0.9900
C4—S1—C191.53 (11)C7—C8—H8A109.7
C2—C1—S1112.5 (3)C9—C8—H8B109.7
C2—C1—H1A123.7C7—C8—H8B109.7
S1—C1—H1A123.7H8A—C8—H8B108.2
C1—C2—C3109.8 (3)C15—C9—C8109.14 (10)
C1—C2—H2125.1C15—C9—C10109.09 (10)
C3—C2—H2125.1C8—C9—C10109.70 (10)
C4—C3—C2116.73 (19)C15—C9—H9109.6
C4—C3—H3121.6C8—C9—H9109.6
C2—C3—H3121.6C10—C9—H9109.6
C4—S1'—C1'91.4 (7)C9—C10—C11109.97 (10)
C2'—C1'—S1'114.0 (15)C9—C10—H10A109.7
C2'—C1'—H1'123.0C11—C10—H10A109.7
S1'—C1'—H1'123.0C9—C10—H10B109.7
C1'—C2'—C3'109.4 (17)C11—C10—H10B109.7
C1'—C2'—H2'125.3H10A—C10—H10B108.2
C3'—C2'—H2'125.3C6—C11—C12108.82 (10)
C4—C3'—C2'112.8 (12)C6—C11—C10106.87 (10)
C4—C3'—H3'123.6C12—C11—C10109.43 (10)
C2'—C3'—H3'123.6C6—C11—H11110.5
C5—N1—N2119.91 (10)C12—C11—H11110.5
C5—N1—H1116.8 (10)C10—C11—H11110.5
N2—N1—H1121.6 (10)C13—C12—C11110.07 (10)
C6—N2—N1117.79 (10)C13—C12—H12A109.6
C3—C4—C3'105.5 (6)C11—C12—H12A109.6
C3—C4—C5122.63 (13)C13—C12—H12B109.6
C3'—C4—C5131.8 (6)C11—C12—H12B109.6
C3'—C4—S1'112.5 (6)H12A—C12—H12B108.2
C5—C4—S1'115.42 (13)C14—C13—C15110.10 (10)
C3—C4—S1109.44 (12)C14—C13—C12108.72 (10)
C5—C4—S1127.90 (9)C15—C13—C12109.52 (10)
S1'—C4—S1116.54 (13)C14—C13—H13109.5
O1—C5—N1119.64 (10)C15—C13—H13109.5
O1—C5—C4119.35 (10)C12—C13—H13109.5
N1—C5—C4120.98 (10)C13—C14—C7109.52 (10)
N2—C6—C7117.30 (10)C13—C14—H14A109.8
N2—C6—C11129.20 (11)C7—C14—H14A109.8
C7—C6—C11113.42 (9)C13—C14—H14B109.8
C6—C7—C8107.35 (10)C7—C14—H14B109.8
C6—C7—C14109.42 (10)H14A—C14—H14B108.2
C8—C7—C14109.31 (10)C13—C15—C9110.08 (10)
C6—C7—H7110.2C13—C15—H15A109.6
C8—C7—H7110.2C9—C15—H15A109.6
C14—C7—H7110.2C13—C15—H15B109.6
C9—C8—C7109.81 (10)C9—C15—H15B109.6
C9—C8—H8A109.7H15A—C15—H15B108.2
C4—S1—C1—C21.5 (2)S1—C4—C5—N115.62 (17)
S1—C1—C2—C3−1.4 (3)N1—N2—C6—C7176.23 (10)
C1—C2—C3—C40.4 (4)N1—N2—C6—C11−0.37 (18)
C4—S1'—C1'—C2'1.7 (16)N2—C6—C7—C8−115.56 (12)
S1'—C1'—C2'—C3'−1(2)C11—C6—C7—C861.57 (13)
C1'—C2'—C3'—C4−1(2)N2—C6—C7—C14125.92 (11)
C5—N1—N2—C6171.74 (11)C11—C6—C7—C14−56.95 (13)
C2—C3—C4—C3'−0.8 (7)C6—C7—C8—C9−58.56 (13)
C2—C3—C4—C5−177.5 (2)C14—C7—C8—C960.04 (13)
C2—C3—C4—S1'−161 (2)C7—C8—C9—C15−60.03 (13)
C2—C3—C4—S10.8 (3)C7—C8—C9—C1059.45 (13)
C2'—C3'—C4—C3−0.4 (14)C15—C9—C10—C1159.76 (12)
C2'—C3'—C4—C5175.8 (10)C8—C9—C10—C11−59.75 (13)
C2'—C3'—C4—S1'2.4 (16)N2—C6—C11—C12−126.71 (13)
C2'—C3'—C4—S1−160 (10)C7—C6—C11—C1256.58 (13)
C1'—S1'—C4—C318.8 (18)N2—C6—C11—C10115.21 (13)
C1'—S1'—C4—C3'−2.3 (11)C7—C6—C11—C10−61.49 (12)
C1'—S1'—C4—C5−176.8 (7)C9—C10—C11—C658.68 (12)
C1'—S1'—C4—S1−0.8 (7)C9—C10—C11—C12−58.99 (13)
C1—S1—C4—C3−1.28 (18)C6—C11—C12—C13−57.90 (13)
C1—S1—C4—C3'19 (9)C10—C11—C12—C1358.55 (13)
C1—S1—C4—C5176.83 (14)C11—C12—C13—C1461.27 (13)
C1—S1—C4—S1'1.40 (18)C11—C12—C13—C15−59.07 (13)
N2—N1—C5—O1177.15 (10)C15—C13—C14—C759.00 (12)
N2—N1—C5—C4−4.97 (16)C12—C13—C14—C7−60.97 (13)
C3—C4—C5—O111.4 (2)C6—C7—C14—C1358.13 (13)
C3'—C4—C5—O1−164.3 (9)C8—C7—C14—C13−59.16 (13)
S1'—C4—C5—O19.0 (2)C14—C13—C15—C9−59.43 (12)
S1—C4—C5—O1−166.49 (9)C12—C13—C15—C960.06 (13)
C3—C4—C5—N1−166.50 (17)C8—C9—C15—C1359.55 (13)
C3'—C4—C5—N117.8 (9)C10—C9—C15—C13−60.30 (13)
S1'—C4—C5—N1−168.90 (17)
Cg1 is the centroid of the S1,C1–C4 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.93 (2)1.92 (2)2.844 (1)173 (2)
C13—H13···Cg1ii1.002.613.5791 (16)163
C15—H15a···Cg1iii0.992.693.5683 (16)148
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the S1,C1–C4 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.93 (2)1.92 (2)2.844 (1)173 (2)
C13—H13⋯Cg1ii1.002.613.5791 (16)163
C15—H15a⋯Cg1iii0.992.693.5683 (16)148

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The toxicologic and pharmacologic properties of amantadine hydrochloride.

Authors:  V G Vernier; J B Harmon; J M Stump; T E Lynes; J P Marvel; D H Smith
Journal:  Toxicol Appl Pharmacol       Date:  1969-11       Impact factor: 4.219

3.  Synthesis, antimicrobial and anti-inflammatory activities of novel 5-(1-adamantyl)-1,3,4-thiadiazole derivatives.

Authors:  Adnan A Kadi; Ebtehal S Al-Abdullah; Ihsan A Shehata; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Eur J Med Chem       Date:  2010-08-12       Impact factor: 6.514

4.  Synthesis, antimicrobial, and anti-HIV-1 activity of certain 5-(1-adamantyl)-2-substituted thio-1,3,4-oxadiazoles and 5-(1-adamantyl)-3-substituted aminomethyl-1,3,4-oxadiazoline-2-thiones.

Authors:  Ali A El-Emam; Omar A Al-Deeb; Mohamed Al-Omar; Jochen Lehmann
Journal:  Bioorg Med Chem       Date:  2004-10-01       Impact factor: 3.641

5.  3-(1-Adamant-yl)-1-{[4-(2-meth-oxy-phen-yl)piperazin-1-yl]meth-yl}-4-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Abdul-Malek S Al-Tamimi; Ahmed Bari; Mohamed A Al-Omar; Khalid A Alrashood; Ali A El-Emam
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-23

6.  Synthesis, antimicrobial, and anti-inflammatory activities of novel 5-(1-adamantyl)-4-arylideneamino-3-mercapto-1,2,4-triazoles and related derivatives.

Authors:  Mohamed A Al-Omar; Ebtehal S Al-Abdullah; Ihsan A Shehata; Elsayed E Habib; Tarek M Ibrahim; Ali A El-Emam
Journal:  Molecules       Date:  2010-04-09       Impact factor: 4.411

  6 in total
  6 in total

1.  3-(Adamantan-1-yl)-1-[(4-ethyl-piperazin-1-yl)meth-yl]-4-[(E)-(4-hy-droxy-benzyl-idene)amino]-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Ali A El-Emam; Khalid A Alrashood; Abdul-Malek S Al-Tamimi; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

2.  2-(Adamantan-1-yl)-5-(4-nitro-phen-yl)-1,3,4-oxadiazole.

Authors:  Ali A El-Emam; Adnan A Kadi; Nasser R El-Brollosy; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

3.  3-(Adamantan-1-yl)-1-[(4-benzyl-piperazin-1-yl)meth-yl]-4-[(E)-(2-hy-droxy-benzyl-idene)amino]-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Ali A El-Emam; Mohamed A Al-Omar; Abdul-Malek S Al-Tamimi; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

4.  1-(Adamantan-1-yl)-3-(4-fluoro-phen-yl)thio-urea.

Authors:  Güneş Demirtaş; Necmi Dege; Mona M Al-Shehri; Ali A El-Emam; Nasser R El-Brollosy; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

5.  Supramolecular Self-Assembly Mediated by Multiple Hydrogen Bonds and the Importance of C-S···N Chalcogen Bonds in N'-(Adamantan-2-ylidene)hydrazide Derivatives.

Authors:  Lamya H Al-Wahaibi; Karthick Vishal Asokan; Nora H Al-Shaalan; Samar S Tawfik; Hanan M Hassan; Ali A El-Emam; M Judith Percino; Subbiah Thamotharan
Journal:  ACS Omega       Date:  2022-03-17

6.  N'-(Adamantan-2-yl-idene)benzo-hydrazide.

Authors:  Maha S Almutairi; Ali A El-Emam; Nasser R El-Brollosy; Mohammed Said-Abdelbaky; Santiago García-Granda
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30
  6 in total

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