| Literature DB >> 22590366 |
Yue-Ping Wang, Wan-Lu Yan, Qiong Guo, Yan-Ping He.
Abstract
The title compound, C(17)H(21)BrN(4)OS, was synthesized as a potential reverse transcriptase (RT) inhibitor of the human immunodeficiency virus type 1 (HIV-1). In the molecule, there is an N-H⋯S hydrogen bond making a five-membered ring. In the crystal, mol-ecules are connected into centrosymmetric dimers via pairs of N-H⋯N and weak C-H⋯N hydrogen bonds. The crystal structure also features C-H⋯O inter-actions.Entities:
Year: 2012 PMID: 22590366 PMCID: PMC3344604 DOI: 10.1107/S1600536812015991
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H21BrN4OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point: 398.8(1) K |
| Mo | |
| Cell parameters from 2212 reflections | |
| θ = 2.3–24.5° | |
| α = 104.132 (1)° | µ = 2.30 mm−1 |
| β = 90.804 (1)° | |
| γ = 95.820 (1)° | Block, colourless |
| 0.25 × 0.16 × 0.12 mm |
| Bruker SMART CCD area-detector diffractometer | 4076 independent reflections |
| Radiation source: fine-focus sealed tube | 2644 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 27.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 8793 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4076 reflections | (Δ/σ)max = 0.001 |
| 217 parameters | Δρmax = 0.34 e Å−3 |
| 0 restraints | Δρmin = −0.42 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 1.07267 (5) | 0.57798 (4) | 0.86425 (2) | 0.07787 (16) | |
| N1 | 0.2679 (3) | 1.0737 (2) | 0.49703 (17) | 0.0506 (6) | |
| N2 | 0.1739 (3) | 0.9382 (2) | 0.60131 (15) | 0.0444 (5) | |
| N3 | 0.1580 (3) | 1.0832 (2) | 0.64012 (16) | 0.0461 (5) | |
| N4 | 0.4730 (3) | 0.6839 (2) | 0.59376 (15) | 0.0434 (5) | |
| H4 | 0.5020 | 0.7572 | 0.5696 | 0.052* | |
| O1 | 0.2434 (3) | 0.5032 (2) | 0.59473 (15) | 0.0683 (6) | |
| S1 | 0.28308 (9) | 0.78377 (7) | 0.42896 (5) | 0.04868 (18) | |
| C1 | 0.2140 (4) | 1.1586 (3) | 0.5772 (2) | 0.0532 (7) | |
| H1 | 0.2151 | 1.2590 | 0.5881 | 0.064* | |
| C2 | 0.0908 (4) | 1.1312 (3) | 0.7364 (2) | 0.0557 (7) | |
| H2A | −0.0288 | 1.0766 | 0.7404 | 0.067* | |
| H2B | 0.0714 | 1.2333 | 0.7483 | 0.067* | |
| C3 | 0.2247 (4) | 1.1117 (3) | 0.81422 (19) | 0.0537 (7) | |
| H3 | 0.2486 | 1.0092 | 0.7988 | 0.064* | |
| C4 | 0.4098 (4) | 1.2034 (4) | 0.8179 (2) | 0.0726 (9) | |
| H4A | 0.3883 | 1.3049 | 0.8277 | 0.087* | |
| H4B | 0.4685 | 1.1743 | 0.7565 | 0.087* | |
| C5 | 0.5408 (5) | 1.1879 (5) | 0.8986 (3) | 0.0958 (12) | |
| H5A | 0.5750 | 1.0892 | 0.8847 | 0.115* | |
| H5B | 0.6540 | 1.2537 | 0.9016 | 0.115* | |
| C6 | 0.4501 (7) | 1.2220 (5) | 0.9949 (3) | 0.1066 (14) | |
| H6A | 0.5329 | 1.2047 | 1.0440 | 0.128* | |
| H6B | 0.4294 | 1.3241 | 1.0124 | 0.128* | |
| C7 | 0.2675 (6) | 1.1298 (5) | 0.9914 (2) | 0.0935 (12) | |
| H7A | 0.2096 | 1.1578 | 1.0531 | 0.112* | |
| H7B | 0.2901 | 1.0285 | 0.9808 | 0.112* | |
| C8 | 0.1356 (5) | 1.1455 (4) | 0.9123 (2) | 0.0755 (9) | |
| H8A | 0.1012 | 1.2442 | 0.9268 | 0.091* | |
| H8B | 0.0227 | 1.0797 | 0.9098 | 0.091* | |
| C9 | 0.2392 (3) | 0.9403 (3) | 0.51580 (18) | 0.0405 (6) | |
| C10 | 0.1917 (4) | 0.6457 (3) | 0.48677 (19) | 0.0465 (6) | |
| H10A | 0.0761 | 0.6752 | 0.5154 | 0.056* | |
| H10B | 0.1590 | 0.5573 | 0.4363 | 0.056* | |
| C11 | 0.3064 (4) | 0.6054 (3) | 0.56361 (19) | 0.0435 (6) | |
| C12 | 0.6046 (3) | 0.6588 (2) | 0.66041 (17) | 0.0397 (6) | |
| C13 | 0.7805 (3) | 0.7356 (3) | 0.66796 (18) | 0.0449 (6) | |
| H13 | 0.8052 | 0.8042 | 0.6320 | 0.054* | |
| C14 | 0.9196 (4) | 0.7118 (3) | 0.72794 (19) | 0.0494 (6) | |
| H14 | 1.0376 | 0.7631 | 0.7319 | 0.059* | |
| C15 | 0.8817 (4) | 0.6118 (3) | 0.78159 (18) | 0.0487 (6) | |
| C16 | 0.7086 (4) | 0.5367 (3) | 0.7767 (2) | 0.0575 (7) | |
| H16 | 0.6845 | 0.4700 | 0.8141 | 0.069* | |
| C17 | 0.5691 (4) | 0.5594 (3) | 0.71644 (19) | 0.0548 (7) | |
| H17 | 0.4513 | 0.5082 | 0.7134 | 0.066* |
| Br1 | 0.0771 (3) | 0.0900 (3) | 0.0738 (2) | 0.01971 (19) | −0.02021 (18) | 0.03131 (19) |
| N1 | 0.0502 (13) | 0.0471 (13) | 0.0616 (15) | −0.0016 (11) | −0.0049 (11) | 0.0299 (12) |
| N2 | 0.0453 (12) | 0.0378 (12) | 0.0519 (13) | 0.0023 (10) | −0.0001 (10) | 0.0156 (10) |
| N3 | 0.0460 (13) | 0.0382 (12) | 0.0539 (14) | 0.0033 (10) | −0.0043 (10) | 0.0119 (10) |
| N4 | 0.0402 (12) | 0.0394 (11) | 0.0550 (13) | 0.0011 (10) | −0.0018 (10) | 0.0217 (10) |
| O1 | 0.0601 (13) | 0.0535 (12) | 0.0978 (16) | −0.0140 (10) | −0.0139 (11) | 0.0406 (12) |
| S1 | 0.0452 (4) | 0.0554 (4) | 0.0474 (4) | 0.0041 (3) | 0.0001 (3) | 0.0172 (3) |
| C1 | 0.0509 (16) | 0.0387 (15) | 0.074 (2) | 0.0001 (13) | −0.0130 (15) | 0.0247 (15) |
| C2 | 0.0510 (17) | 0.0502 (16) | 0.0640 (19) | 0.0086 (13) | 0.0011 (14) | 0.0091 (14) |
| C3 | 0.0556 (17) | 0.0485 (16) | 0.0580 (17) | 0.0070 (13) | 0.0034 (14) | 0.0145 (13) |
| C4 | 0.060 (2) | 0.087 (2) | 0.074 (2) | −0.0060 (18) | −0.0076 (16) | 0.0336 (18) |
| C5 | 0.070 (2) | 0.128 (3) | 0.098 (3) | −0.007 (2) | −0.025 (2) | 0.051 (3) |
| C6 | 0.123 (4) | 0.119 (3) | 0.076 (3) | 0.001 (3) | −0.031 (3) | 0.026 (2) |
| C7 | 0.126 (4) | 0.105 (3) | 0.056 (2) | 0.026 (3) | 0.008 (2) | 0.027 (2) |
| C8 | 0.083 (2) | 0.078 (2) | 0.066 (2) | 0.0134 (19) | 0.0163 (19) | 0.0176 (18) |
| C9 | 0.0322 (13) | 0.0427 (14) | 0.0492 (15) | −0.0013 (11) | −0.0073 (11) | 0.0191 (12) |
| C10 | 0.0425 (15) | 0.0378 (14) | 0.0566 (16) | −0.0001 (11) | −0.0033 (12) | 0.0087 (12) |
| C11 | 0.0409 (15) | 0.0342 (13) | 0.0544 (16) | 0.0046 (11) | 0.0007 (12) | 0.0086 (12) |
| C12 | 0.0415 (14) | 0.0355 (13) | 0.0446 (14) | 0.0055 (11) | 0.0020 (11) | 0.0141 (11) |
| C13 | 0.0465 (15) | 0.0410 (14) | 0.0498 (15) | −0.0022 (12) | −0.0011 (12) | 0.0192 (12) |
| C14 | 0.0428 (15) | 0.0464 (15) | 0.0581 (17) | −0.0043 (12) | −0.0051 (13) | 0.0153 (13) |
| C15 | 0.0555 (17) | 0.0498 (16) | 0.0436 (15) | 0.0113 (14) | −0.0053 (12) | 0.0149 (12) |
| C16 | 0.0617 (19) | 0.0613 (18) | 0.0582 (18) | −0.0004 (15) | 0.0003 (15) | 0.0343 (15) |
| C17 | 0.0482 (16) | 0.0591 (17) | 0.0623 (18) | −0.0054 (14) | 0.0002 (14) | 0.0298 (15) |
| Br1—C15 | 1.903 (2) | C5—H5A | 0.9700 |
| N1—C1 | 1.319 (3) | C5—H5B | 0.9700 |
| N1—C9 | 1.357 (3) | C6—C7 | 1.499 (5) |
| N2—C9 | 1.319 (3) | C6—H6A | 0.9700 |
| N2—N3 | 1.373 (3) | C6—H6B | 0.9700 |
| N3—C1 | 1.324 (3) | C7—C8 | 1.512 (5) |
| N3—C2 | 1.447 (3) | C7—H7A | 0.9700 |
| N4—C11 | 1.353 (3) | C7—H7B | 0.9700 |
| N4—C12 | 1.412 (3) | C8—H8A | 0.9700 |
| N4—H4 | 0.8600 | C8—H8B | 0.9700 |
| O1—C11 | 1.215 (3) | C10—C11 | 1.510 (3) |
| S1—C9 | 1.750 (3) | C10—H10A | 0.9700 |
| S1—C10 | 1.793 (3) | C10—H10B | 0.9700 |
| C1—H1 | 0.9300 | C12—C13 | 1.387 (3) |
| C2—C3 | 1.519 (4) | C12—C17 | 1.388 (3) |
| C2—H2A | 0.9700 | C13—C14 | 1.381 (3) |
| C2—H2B | 0.9700 | C13—H13 | 0.9300 |
| C3—C4 | 1.512 (4) | C14—C15 | 1.371 (4) |
| C3—C8 | 1.525 (4) | C14—H14 | 0.9300 |
| C3—H3 | 0.9800 | C15—C16 | 1.365 (4) |
| C4—C5 | 1.525 (4) | C16—C17 | 1.382 (4) |
| C4—H4A | 0.9700 | C16—H16 | 0.9300 |
| C4—H4B | 0.9700 | C17—H17 | 0.9300 |
| C5—C6 | 1.508 (5) | ||
| C1—N1—C9 | 101.8 (2) | C6—C7—C8 | 112.0 (3) |
| C9—N2—N3 | 101.66 (19) | C6—C7—H7A | 109.2 |
| C1—N3—N2 | 109.2 (2) | C8—C7—H7A | 109.2 |
| C1—N3—C2 | 130.5 (2) | C6—C7—H7B | 109.2 |
| N2—N3—C2 | 120.3 (2) | C8—C7—H7B | 109.2 |
| C11—N4—C12 | 127.3 (2) | H7A—C7—H7B | 107.9 |
| C11—N4—H4 | 116.4 | C7—C8—C3 | 111.3 (3) |
| C12—N4—H4 | 116.4 | C7—C8—H8A | 109.4 |
| C9—S1—C10 | 100.22 (12) | C3—C8—H8A | 109.4 |
| N1—C1—N3 | 111.7 (2) | C7—C8—H8B | 109.4 |
| N1—C1—H1 | 124.1 | C3—C8—H8B | 109.4 |
| N3—C1—H1 | 124.1 | H8A—C8—H8B | 108.0 |
| N3—C2—C3 | 112.8 (2) | N2—C9—N1 | 115.6 (2) |
| N3—C2—H2A | 109.0 | N2—C9—S1 | 123.67 (18) |
| C3—C2—H2A | 109.0 | N1—C9—S1 | 120.7 (2) |
| N3—C2—H2B | 109.0 | C11—C10—S1 | 120.69 (18) |
| C3—C2—H2B | 109.0 | C11—C10—H10A | 107.2 |
| H2A—C2—H2B | 107.8 | S1—C10—H10A | 107.2 |
| C4—C3—C2 | 112.2 (2) | C11—C10—H10B | 107.2 |
| C4—C3—C8 | 110.8 (3) | S1—C10—H10B | 107.2 |
| C2—C3—C8 | 110.2 (2) | H10A—C10—H10B | 106.8 |
| C4—C3—H3 | 107.8 | O1—C11—N4 | 123.6 (2) |
| C2—C3—H3 | 107.8 | O1—C11—C10 | 117.7 (2) |
| C8—C3—H3 | 107.8 | N4—C11—C10 | 118.6 (2) |
| C3—C4—C5 | 111.9 (3) | C13—C12—C17 | 118.6 (2) |
| C3—C4—H4A | 109.2 | C13—C12—N4 | 117.6 (2) |
| C5—C4—H4A | 109.2 | C17—C12—N4 | 123.8 (2) |
| C3—C4—H4B | 109.2 | C14—C13—C12 | 121.1 (2) |
| C5—C4—H4B | 109.2 | C14—C13—H13 | 119.5 |
| H4A—C4—H4B | 107.9 | C12—C13—H13 | 119.5 |
| C6—C5—C4 | 111.2 (3) | C15—C14—C13 | 119.2 (2) |
| C6—C5—H5A | 109.4 | C15—C14—H14 | 120.4 |
| C4—C5—H5A | 109.4 | C13—C14—H14 | 120.4 |
| C6—C5—H5B | 109.4 | C16—C15—C14 | 120.8 (2) |
| C4—C5—H5B | 109.4 | C16—C15—Br1 | 119.7 (2) |
| H5A—C5—H5B | 108.0 | C14—C15—Br1 | 119.5 (2) |
| C7—C6—C5 | 111.2 (3) | C15—C16—C17 | 120.3 (2) |
| C7—C6—H6A | 109.4 | C15—C16—H16 | 119.9 |
| C5—C6—H6A | 109.4 | C17—C16—H16 | 119.9 |
| C7—C6—H6B | 109.4 | C16—C17—C12 | 120.0 (3) |
| C5—C6—H6B | 109.4 | C16—C17—H17 | 120.0 |
| H6A—C6—H6B | 108.0 | C12—C17—H17 | 120.0 |
| C9—N2—N3—C1 | −0.3 (3) | C1—N1—C9—S1 | 178.04 (18) |
| C9—N2—N3—C2 | −179.5 (2) | C10—S1—C9—N2 | 6.0 (2) |
| C9—N1—C1—N3 | 0.4 (3) | C10—S1—C9—N1 | −172.49 (19) |
| N2—N3—C1—N1 | −0.1 (3) | C9—S1—C10—C11 | −81.3 (2) |
| C2—N3—C1—N1 | 179.1 (2) | C12—N4—C11—O1 | 3.5 (4) |
| C1—N3—C2—C3 | −112.1 (3) | C12—N4—C11—C10 | −176.2 (2) |
| N2—N3—C2—C3 | 67.0 (3) | S1—C10—C11—O1 | −174.2 (2) |
| N3—C2—C3—C4 | 63.3 (3) | S1—C10—C11—N4 | 5.5 (3) |
| N3—C2—C3—C8 | −172.7 (2) | C11—N4—C12—C13 | 168.5 (2) |
| C2—C3—C4—C5 | 177.8 (3) | C11—N4—C12—C17 | −9.8 (4) |
| C8—C3—C4—C5 | 54.1 (4) | C17—C12—C13—C14 | 1.6 (4) |
| C3—C4—C5—C6 | −54.9 (4) | N4—C12—C13—C14 | −176.8 (2) |
| C4—C5—C6—C7 | 55.1 (5) | C12—C13—C14—C15 | −0.8 (4) |
| C5—C6—C7—C8 | −55.9 (5) | C13—C14—C15—C16 | −0.4 (4) |
| C6—C7—C8—C3 | 55.4 (4) | C13—C14—C15—Br1 | 179.86 (19) |
| C4—C3—C8—C7 | −54.1 (4) | C14—C15—C16—C17 | 0.7 (4) |
| C2—C3—C8—C7 | −178.8 (3) | Br1—C15—C16—C17 | −179.5 (2) |
| N3—N2—C9—N1 | 0.5 (3) | C15—C16—C17—C12 | 0.1 (4) |
| N3—N2—C9—S1 | −178.05 (16) | C13—C12—C17—C16 | −1.3 (4) |
| C1—N1—C9—N2 | −0.6 (3) | N4—C12—C17—C16 | 177.0 (2) |
| H··· | ||||
| N4—H4···S1 | 0.86 | 2.61 | 3.096 (2) | 117 |
| N4—H4···N1i | 0.86 | 2.55 | 3.339 (3) | 153 |
| C1—H1···O1ii | 0.93 | 2.29 | 3.214 (3) | 171 |
| C13—H13···N1i | 0.93 | 2.48 | 3.342 (3) | 153 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N4—H4⋯S1 | 0.86 | 2.61 | 3.096 (2) | 117 |
| N4—H4⋯N1i | 0.86 | 2.55 | 3.339 (3) | 153 |
| C1—H1⋯O1ii | 0.93 | 2.29 | 3.214 (3) | 171 |
| C13—H13⋯N1i | 0.93 | 2.48 | 3.342 (3) | 153 |
Symmetry codes: (i) ; (ii) .