Literature DB >> 22590366

N-(4-Bromo-phen-yl)-2-[(1-cyclo-hexyl-meth-yl-1H-1,2,4-triazol-3-yl)sulfanyl]-acetamide.

Yue-Ping Wang, Wan-Lu Yan, Qiong Guo, Yan-Ping He.   

Abstract

The title compound, C(17)H(21)BrN(4)OS, was synthesized as a potential reverse transcriptase (RT) inhibitor of the human immunodeficiency virus type 1 (HIV-1). In the molecule, there is an N-H⋯S hydrogen bond making a five-membered ring. In the crystal, mol-ecules are connected into centrosymmetric dimers via pairs of N-H⋯N and weak C-H⋯N hydrogen bonds. The crystal structure also features C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22590366      PMCID: PMC3344604          DOI: 10.1107/S1600536812015991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The 1,2,4-triazole scaffold and its analogues are important pharmacophores that can be found in biologically active compounds across a number of different therapeutic areas, see: Lin et al. (2005 ▶); Naito et al. (1996 ▶); Sui et al. (1998 ▶); Tafi et al. (2002 ▶).

Experimental

Crystal data

C17H21BrN4OS M = 409.35 Triclinic, a = 7.2061 (8) Å b = 9.521 (1) Å c = 14.2862 (16) Å α = 104.132 (1)° β = 90.804 (1)° γ = 95.820 (1)° V = 944.84 (18) Å3 Z = 2 Mo Kα radiation μ = 2.30 mm−1 T = 298 K 0.25 × 0.16 × 0.12 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.597, T max = 0.770 8793 measured reflections 4076 independent reflections 2644 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.092 S = 1.01 4076 reflections 217 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.42 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015991/bq2348sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015991/bq2348Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H21BrN4OSZ = 2
Mr = 409.35F(000) = 420
Triclinic, P1Dx = 1.439 Mg m3
Hall symbol: -P 1Melting point: 398.8(1) K
a = 7.2061 (8) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.521 (1) ÅCell parameters from 2212 reflections
c = 14.2862 (16) Åθ = 2.3–24.5°
α = 104.132 (1)°µ = 2.30 mm1
β = 90.804 (1)°T = 298 K
γ = 95.820 (1)°Block, colourless
V = 944.84 (18) Å30.25 × 0.16 × 0.12 mm
Bruker SMART CCD area-detector diffractometer4076 independent reflections
Radiation source: fine-focus sealed tube2644 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
phi and ω scansθmax = 27.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −9→8
Tmin = 0.597, Tmax = 0.770k = −12→12
8793 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0382P)2 + 0.1448P] where P = (Fo2 + 2Fc2)/3
4076 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.07267 (5)0.57798 (4)0.86425 (2)0.07787 (16)
N10.2679 (3)1.0737 (2)0.49703 (17)0.0506 (6)
N20.1739 (3)0.9382 (2)0.60131 (15)0.0444 (5)
N30.1580 (3)1.0832 (2)0.64012 (16)0.0461 (5)
N40.4730 (3)0.6839 (2)0.59376 (15)0.0434 (5)
H40.50200.75720.56960.052*
O10.2434 (3)0.5032 (2)0.59473 (15)0.0683 (6)
S10.28308 (9)0.78377 (7)0.42896 (5)0.04868 (18)
C10.2140 (4)1.1586 (3)0.5772 (2)0.0532 (7)
H10.21511.25900.58810.064*
C20.0908 (4)1.1312 (3)0.7364 (2)0.0557 (7)
H2A−0.02881.07660.74040.067*
H2B0.07141.23330.74830.067*
C30.2247 (4)1.1117 (3)0.81422 (19)0.0537 (7)
H30.24861.00920.79880.064*
C40.4098 (4)1.2034 (4)0.8179 (2)0.0726 (9)
H4A0.38831.30490.82770.087*
H4B0.46851.17430.75650.087*
C50.5408 (5)1.1879 (5)0.8986 (3)0.0958 (12)
H5A0.57501.08920.88470.115*
H5B0.65401.25370.90160.115*
C60.4501 (7)1.2220 (5)0.9949 (3)0.1066 (14)
H6A0.53291.20471.04400.128*
H6B0.42941.32411.01240.128*
C70.2675 (6)1.1298 (5)0.9914 (2)0.0935 (12)
H7A0.20961.15781.05310.112*
H7B0.29011.02850.98080.112*
C80.1356 (5)1.1455 (4)0.9123 (2)0.0755 (9)
H8A0.10121.24420.92680.091*
H8B0.02271.07970.90980.091*
C90.2392 (3)0.9403 (3)0.51580 (18)0.0405 (6)
C100.1917 (4)0.6457 (3)0.48677 (19)0.0465 (6)
H10A0.07610.67520.51540.056*
H10B0.15900.55730.43630.056*
C110.3064 (4)0.6054 (3)0.56361 (19)0.0435 (6)
C120.6046 (3)0.6588 (2)0.66041 (17)0.0397 (6)
C130.7805 (3)0.7356 (3)0.66796 (18)0.0449 (6)
H130.80520.80420.63200.054*
C140.9196 (4)0.7118 (3)0.72794 (19)0.0494 (6)
H141.03760.76310.73190.059*
C150.8817 (4)0.6118 (3)0.78159 (18)0.0487 (6)
C160.7086 (4)0.5367 (3)0.7767 (2)0.0575 (7)
H160.68450.47000.81410.069*
C170.5691 (4)0.5594 (3)0.71644 (19)0.0548 (7)
H170.45130.50820.71340.066*
U11U22U33U12U13U23
Br10.0771 (3)0.0900 (3)0.0738 (2)0.01971 (19)−0.02021 (18)0.03131 (19)
N10.0502 (13)0.0471 (13)0.0616 (15)−0.0016 (11)−0.0049 (11)0.0299 (12)
N20.0453 (12)0.0378 (12)0.0519 (13)0.0023 (10)−0.0001 (10)0.0156 (10)
N30.0460 (13)0.0382 (12)0.0539 (14)0.0033 (10)−0.0043 (10)0.0119 (10)
N40.0402 (12)0.0394 (11)0.0550 (13)0.0011 (10)−0.0018 (10)0.0217 (10)
O10.0601 (13)0.0535 (12)0.0978 (16)−0.0140 (10)−0.0139 (11)0.0406 (12)
S10.0452 (4)0.0554 (4)0.0474 (4)0.0041 (3)0.0001 (3)0.0172 (3)
C10.0509 (16)0.0387 (15)0.074 (2)0.0001 (13)−0.0130 (15)0.0247 (15)
C20.0510 (17)0.0502 (16)0.0640 (19)0.0086 (13)0.0011 (14)0.0091 (14)
C30.0556 (17)0.0485 (16)0.0580 (17)0.0070 (13)0.0034 (14)0.0145 (13)
C40.060 (2)0.087 (2)0.074 (2)−0.0060 (18)−0.0076 (16)0.0336 (18)
C50.070 (2)0.128 (3)0.098 (3)−0.007 (2)−0.025 (2)0.051 (3)
C60.123 (4)0.119 (3)0.076 (3)0.001 (3)−0.031 (3)0.026 (2)
C70.126 (4)0.105 (3)0.056 (2)0.026 (3)0.008 (2)0.027 (2)
C80.083 (2)0.078 (2)0.066 (2)0.0134 (19)0.0163 (19)0.0176 (18)
C90.0322 (13)0.0427 (14)0.0492 (15)−0.0013 (11)−0.0073 (11)0.0191 (12)
C100.0425 (15)0.0378 (14)0.0566 (16)−0.0001 (11)−0.0033 (12)0.0087 (12)
C110.0409 (15)0.0342 (13)0.0544 (16)0.0046 (11)0.0007 (12)0.0086 (12)
C120.0415 (14)0.0355 (13)0.0446 (14)0.0055 (11)0.0020 (11)0.0141 (11)
C130.0465 (15)0.0410 (14)0.0498 (15)−0.0022 (12)−0.0011 (12)0.0192 (12)
C140.0428 (15)0.0464 (15)0.0581 (17)−0.0043 (12)−0.0051 (13)0.0153 (13)
C150.0555 (17)0.0498 (16)0.0436 (15)0.0113 (14)−0.0053 (12)0.0149 (12)
C160.0617 (19)0.0613 (18)0.0582 (18)−0.0004 (15)0.0003 (15)0.0343 (15)
C170.0482 (16)0.0591 (17)0.0623 (18)−0.0054 (14)0.0002 (14)0.0298 (15)
Br1—C151.903 (2)C5—H5A0.9700
N1—C11.319 (3)C5—H5B0.9700
N1—C91.357 (3)C6—C71.499 (5)
N2—C91.319 (3)C6—H6A0.9700
N2—N31.373 (3)C6—H6B0.9700
N3—C11.324 (3)C7—C81.512 (5)
N3—C21.447 (3)C7—H7A0.9700
N4—C111.353 (3)C7—H7B0.9700
N4—C121.412 (3)C8—H8A0.9700
N4—H40.8600C8—H8B0.9700
O1—C111.215 (3)C10—C111.510 (3)
S1—C91.750 (3)C10—H10A0.9700
S1—C101.793 (3)C10—H10B0.9700
C1—H10.9300C12—C131.387 (3)
C2—C31.519 (4)C12—C171.388 (3)
C2—H2A0.9700C13—C141.381 (3)
C2—H2B0.9700C13—H130.9300
C3—C41.512 (4)C14—C151.371 (4)
C3—C81.525 (4)C14—H140.9300
C3—H30.9800C15—C161.365 (4)
C4—C51.525 (4)C16—C171.382 (4)
C4—H4A0.9700C16—H160.9300
C4—H4B0.9700C17—H170.9300
C5—C61.508 (5)
C1—N1—C9101.8 (2)C6—C7—C8112.0 (3)
C9—N2—N3101.66 (19)C6—C7—H7A109.2
C1—N3—N2109.2 (2)C8—C7—H7A109.2
C1—N3—C2130.5 (2)C6—C7—H7B109.2
N2—N3—C2120.3 (2)C8—C7—H7B109.2
C11—N4—C12127.3 (2)H7A—C7—H7B107.9
C11—N4—H4116.4C7—C8—C3111.3 (3)
C12—N4—H4116.4C7—C8—H8A109.4
C9—S1—C10100.22 (12)C3—C8—H8A109.4
N1—C1—N3111.7 (2)C7—C8—H8B109.4
N1—C1—H1124.1C3—C8—H8B109.4
N3—C1—H1124.1H8A—C8—H8B108.0
N3—C2—C3112.8 (2)N2—C9—N1115.6 (2)
N3—C2—H2A109.0N2—C9—S1123.67 (18)
C3—C2—H2A109.0N1—C9—S1120.7 (2)
N3—C2—H2B109.0C11—C10—S1120.69 (18)
C3—C2—H2B109.0C11—C10—H10A107.2
H2A—C2—H2B107.8S1—C10—H10A107.2
C4—C3—C2112.2 (2)C11—C10—H10B107.2
C4—C3—C8110.8 (3)S1—C10—H10B107.2
C2—C3—C8110.2 (2)H10A—C10—H10B106.8
C4—C3—H3107.8O1—C11—N4123.6 (2)
C2—C3—H3107.8O1—C11—C10117.7 (2)
C8—C3—H3107.8N4—C11—C10118.6 (2)
C3—C4—C5111.9 (3)C13—C12—C17118.6 (2)
C3—C4—H4A109.2C13—C12—N4117.6 (2)
C5—C4—H4A109.2C17—C12—N4123.8 (2)
C3—C4—H4B109.2C14—C13—C12121.1 (2)
C5—C4—H4B109.2C14—C13—H13119.5
H4A—C4—H4B107.9C12—C13—H13119.5
C6—C5—C4111.2 (3)C15—C14—C13119.2 (2)
C6—C5—H5A109.4C15—C14—H14120.4
C4—C5—H5A109.4C13—C14—H14120.4
C6—C5—H5B109.4C16—C15—C14120.8 (2)
C4—C5—H5B109.4C16—C15—Br1119.7 (2)
H5A—C5—H5B108.0C14—C15—Br1119.5 (2)
C7—C6—C5111.2 (3)C15—C16—C17120.3 (2)
C7—C6—H6A109.4C15—C16—H16119.9
C5—C6—H6A109.4C17—C16—H16119.9
C7—C6—H6B109.4C16—C17—C12120.0 (3)
C5—C6—H6B109.4C16—C17—H17120.0
H6A—C6—H6B108.0C12—C17—H17120.0
C9—N2—N3—C1−0.3 (3)C1—N1—C9—S1178.04 (18)
C9—N2—N3—C2−179.5 (2)C10—S1—C9—N26.0 (2)
C9—N1—C1—N30.4 (3)C10—S1—C9—N1−172.49 (19)
N2—N3—C1—N1−0.1 (3)C9—S1—C10—C11−81.3 (2)
C2—N3—C1—N1179.1 (2)C12—N4—C11—O13.5 (4)
C1—N3—C2—C3−112.1 (3)C12—N4—C11—C10−176.2 (2)
N2—N3—C2—C367.0 (3)S1—C10—C11—O1−174.2 (2)
N3—C2—C3—C463.3 (3)S1—C10—C11—N45.5 (3)
N3—C2—C3—C8−172.7 (2)C11—N4—C12—C13168.5 (2)
C2—C3—C4—C5177.8 (3)C11—N4—C12—C17−9.8 (4)
C8—C3—C4—C554.1 (4)C17—C12—C13—C141.6 (4)
C3—C4—C5—C6−54.9 (4)N4—C12—C13—C14−176.8 (2)
C4—C5—C6—C755.1 (5)C12—C13—C14—C15−0.8 (4)
C5—C6—C7—C8−55.9 (5)C13—C14—C15—C16−0.4 (4)
C6—C7—C8—C355.4 (4)C13—C14—C15—Br1179.86 (19)
C4—C3—C8—C7−54.1 (4)C14—C15—C16—C170.7 (4)
C2—C3—C8—C7−178.8 (3)Br1—C15—C16—C17−179.5 (2)
N3—N2—C9—N10.5 (3)C15—C16—C17—C120.1 (4)
N3—N2—C9—S1−178.05 (16)C13—C12—C17—C16−1.3 (4)
C1—N1—C9—N2−0.6 (3)N4—C12—C17—C16177.0 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4···S10.862.613.096 (2)117
N4—H4···N1i0.862.553.339 (3)153
C1—H1···O1ii0.932.293.214 (3)171
C13—H13···N1i0.932.483.342 (3)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯S10.862.613.096 (2)117
N4—H4⋯N1i0.862.553.339 (3)153
C1—H1⋯O1ii0.932.293.214 (3)171
C13—H13⋯N1i0.932.483.342 (3)153

Symmetry codes: (i) ; (ii) .

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