Literature DB >> 22590306

N'-[(E)-4-Benz-yloxy-2-hy-droxy-benzyl-idene]-4-nitro-benzohydrazide monohydrate.

Bibitha Joseph, M Sithambaresan, M R Prathapachandra Kurup.   

Abstract

The title compound, C(21)H(17)N(3)O(5)·H(2)O, exists in the keto form with an E conformation with respect to the azomethine double bond. The twist angles between the aromatic rings are in the range 4.67 (10)-17.54 (10)°. A water mol-ecule of solvation is present in the lattice. A conventional intra-molecular O-H⋯N hydrogen bond increases the rigidity of the mol-ecule. Inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen-bonding inter-actions establish a supra-molecular linkage among the mol-ecules in the crystal structure. There are also C-H⋯π inter-actions present.

Entities:  

Year:  2012        PMID: 22590306      PMCID: PMC3344544          DOI: 10.1107/S1600536812015401

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and other applications of carbohydrazides, see: Lakshmi et al. (2011 ▶); Grande et al. (2007 ▶); Naseema et al. (2010 ▶). For the synthesis, see: Emmanuel et al. (2011 ▶). For related structures of carbohydrazides, see: Fun et al. (2008 ▶). For the keto form, see: Bakir & Brown (2002 ▶).

Experimental

Crystal data

C21H17N3O5·H2O M = 409.39 Monoclinic, a = 4.6275 (7) Å b = 6.5332 (11) Å c = 31.856 (5) Å β = 92.417 (4)° V = 962.2 (3) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.30 × 0.28 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.969, T max = 0.974 7388 measured reflections 1713 independent reflections 1663 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.088 S = 1.05 1713 reflections 288 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015401/fj2537sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015401/fj2537Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015401/fj2537Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H17N3O5·H2OF(000) = 428.0
Mr = 409.39Dx = 1.413 Mg m3
Monoclinic, PcMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2ycCell parameters from 4698 reflections
a = 4.6275 (7) Åθ = 3.1–28.2°
b = 6.5332 (11) ŵ = 0.11 mm1
c = 31.856 (5) ÅT = 296 K
β = 92.417 (4)°Block, yellow
V = 962.2 (3) Å30.30 × 0.28 × 0.25 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer1713 independent reflections
Radiation source: fine-focus sealed tube1663 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
ω and φ scanθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −3→5
Tmin = 0.969, Tmax = 0.974k = −7→7
7388 measured reflectionsl = −37→37
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.0687P)2 + 0.0484P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.011
1713 reflectionsΔρmax = 0.14 e Å3
288 parametersΔρmin = −0.16 e Å3
7 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.021 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.5580 (7)0.1667 (5)0.47190 (9)0.0986 (10)
O2−0.5671 (7)0.4470 (5)0.50699 (9)0.0960 (9)
O30.3371 (5)0.9071 (3)0.37071 (7)0.0673 (6)
O40.8452 (4)1.0067 (3)0.26751 (6)0.0537 (5)
O51.4446 (4)0.8132 (2)0.15654 (5)0.0428 (4)
O1S0.3303 (5)0.1942 (3)0.31076 (7)0.0596 (5)
N1−0.4868 (6)0.3450 (5)0.47795 (8)0.0623 (7)
N20.3751 (4)0.6173 (3)0.33257 (6)0.0380 (4)
N30.5600 (4)0.7064 (3)0.30472 (6)0.0370 (4)
C11.8112 (6)0.8824 (4)0.09200 (9)0.0507 (6)
H11.75280.75020.09830.061*
C22.0020 (6)0.9151 (5)0.05996 (9)0.0593 (8)
H22.07030.80440.04490.071*
C32.0894 (6)1.1089 (5)0.05048 (9)0.0589 (8)
H32.21861.12920.02930.071*
C41.9873 (6)1.2742 (5)0.07214 (9)0.0600 (7)
H42.04541.40610.06540.072*
C51.7976 (6)1.2430 (4)0.10394 (9)0.0508 (6)
H51.72821.35460.11860.061*
C61.7094 (4)1.0458 (4)0.11423 (7)0.0377 (5)
C71.5050 (5)1.0238 (4)0.14926 (7)0.0391 (5)
H7A1.59011.08460.17470.047*
H7B1.32641.09570.14210.047*
C81.2534 (4)0.7701 (4)0.18637 (7)0.0355 (5)
C91.1417 (5)0.9148 (3)0.21297 (7)0.0371 (5)
H91.19631.05130.21080.044*
C100.9484 (4)0.8566 (4)0.24291 (7)0.0345 (5)
C110.8636 (4)0.6529 (4)0.24699 (7)0.0346 (5)
C120.9782 (5)0.5107 (4)0.21932 (8)0.0430 (5)
H120.92330.37420.22120.052*
C131.1688 (5)0.5665 (4)0.18961 (8)0.0434 (5)
H131.24150.46860.17170.052*
C140.6665 (5)0.5843 (4)0.27812 (7)0.0388 (5)
H140.61560.44670.27880.047*
C150.2747 (5)0.7263 (4)0.36431 (8)0.0405 (5)
C160.0762 (5)0.6172 (4)0.39327 (7)0.0382 (5)
C17−0.0090 (6)0.7250 (4)0.42798 (8)0.0522 (6)
H170.05830.85760.43260.063*
C18−0.1943 (6)0.6370 (5)0.45600 (8)0.0567 (7)
H18−0.25260.70920.47930.068*
C19−0.2898 (5)0.4403 (4)0.44837 (7)0.0452 (6)
C20−0.2096 (6)0.3294 (4)0.41418 (9)0.0524 (6)
H20−0.27690.19670.40980.063*
C21−0.0266 (6)0.4198 (4)0.38649 (8)0.0494 (6)
H210.02850.34740.36300.059*
H1S0.325 (10)0.105 (6)0.3313 (11)0.096 (14)*
H2S0.169 (6)0.160 (6)0.2975 (12)0.099 (14)*
H2N0.336 (6)0.489 (3)0.3287 (9)0.046 (7)*
H4O0.730 (7)0.958 (7)0.2853 (11)0.090 (13)*
U11U22U33U12U13U23
O10.123 (2)0.097 (2)0.0791 (17)−0.0492 (18)0.0467 (15)−0.0001 (15)
O20.1081 (19)0.108 (2)0.0771 (16)−0.0053 (17)0.0631 (14)−0.0006 (15)
O30.1030 (17)0.0439 (11)0.0571 (11)−0.0205 (10)0.0283 (10)−0.0053 (9)
O40.0609 (11)0.0409 (10)0.0623 (11)−0.0109 (8)0.0384 (9)−0.0097 (8)
O50.0446 (8)0.0385 (9)0.0470 (9)0.0009 (8)0.0217 (7)0.0040 (7)
O1S0.0790 (14)0.0383 (9)0.0638 (12)−0.0155 (9)0.0283 (10)−0.0050 (9)
N10.0571 (14)0.0820 (19)0.0491 (12)−0.0043 (13)0.0172 (11)0.0143 (13)
N20.0434 (10)0.0318 (10)0.0400 (10)−0.0066 (8)0.0150 (8)0.0050 (8)
N30.0357 (10)0.0364 (10)0.0398 (10)−0.0075 (8)0.0127 (7)0.0060 (8)
C10.0523 (14)0.0453 (14)0.0560 (15)−0.0009 (12)0.0202 (12)0.0008 (11)
C20.0609 (17)0.065 (2)0.0547 (15)0.0085 (14)0.0296 (13)−0.0029 (13)
C30.0500 (14)0.081 (2)0.0477 (14)0.0040 (14)0.0227 (11)0.0143 (15)
C40.0598 (16)0.0594 (17)0.0624 (17)−0.0058 (14)0.0212 (13)0.0237 (15)
C50.0517 (14)0.0444 (14)0.0579 (14)0.0025 (11)0.0195 (11)0.0093 (12)
C60.0303 (10)0.0455 (12)0.0378 (11)0.0008 (10)0.0089 (9)0.0078 (10)
C70.0378 (11)0.0382 (12)0.0420 (12)0.0016 (10)0.0118 (9)0.0024 (10)
C80.0334 (11)0.0391 (12)0.0346 (10)0.0020 (9)0.0097 (8)0.0037 (9)
C90.0390 (11)0.0304 (11)0.0426 (12)−0.0034 (9)0.0106 (9)0.0016 (9)
C100.0353 (11)0.0327 (12)0.0362 (11)−0.0026 (9)0.0100 (8)−0.0011 (9)
C110.0312 (10)0.0356 (12)0.0374 (11)−0.0039 (9)0.0066 (9)0.0019 (9)
C120.0457 (12)0.0300 (11)0.0542 (14)−0.0021 (10)0.0139 (10)0.0002 (10)
C130.0454 (12)0.0365 (12)0.0497 (12)0.0018 (10)0.0174 (10)−0.0052 (10)
C140.0382 (11)0.0338 (12)0.0452 (12)−0.0049 (9)0.0102 (10)0.0073 (9)
C150.0459 (12)0.0373 (12)0.0389 (11)−0.0050 (10)0.0095 (9)0.0028 (10)
C160.0393 (11)0.0419 (12)0.0341 (11)0.0032 (10)0.0082 (9)0.0054 (9)
C170.0611 (16)0.0511 (15)0.0455 (13)−0.0088 (13)0.0140 (11)−0.0051 (12)
C180.0648 (16)0.0659 (17)0.0409 (13)−0.0006 (14)0.0201 (11)−0.0074 (13)
C190.0388 (12)0.0614 (17)0.0362 (12)0.0002 (11)0.0100 (9)0.0102 (11)
C200.0569 (15)0.0443 (14)0.0575 (15)−0.0059 (12)0.0198 (12)0.0053 (12)
C210.0580 (15)0.0452 (14)0.0468 (13)−0.0061 (12)0.0232 (11)−0.0028 (11)
O1—N11.224 (4)C6—C71.500 (3)
O2—N11.211 (4)C7—H7A0.9700
O3—C151.231 (3)C7—H7B0.9700
O4—C101.355 (3)C8—C91.384 (3)
O4—H4O0.86 (2)C8—C131.392 (4)
O5—C81.355 (3)C9—C101.388 (3)
O5—C71.425 (3)C9—H90.9300
O1S—H1S0.88 (2)C10—C111.395 (3)
O1S—H2S0.873 (19)C11—C121.400 (3)
N1—C191.476 (3)C11—C141.446 (3)
N2—C151.336 (3)C12—C131.370 (3)
N2—N31.386 (3)C12—H120.9300
N2—H2N0.863 (19)C13—H130.9300
N3—C141.277 (3)C14—H140.9300
C1—C61.375 (4)C15—C161.508 (3)
C1—C21.394 (4)C16—C171.383 (4)
C1—H10.9300C16—C211.388 (4)
C2—C31.367 (5)C17—C181.388 (4)
C2—H20.9300C17—H170.9300
C3—C41.376 (5)C18—C191.377 (4)
C3—H30.9300C18—H180.9300
C4—C51.383 (4)C19—C201.372 (4)
C4—H40.9300C20—C211.381 (4)
C5—C61.394 (3)C20—H200.9300
C5—H50.9300C21—H210.9300
C10—O4—H4O111 (3)C8—C9—H9119.9
C8—O5—C7116.93 (17)C10—C9—H9119.9
H1S—O1S—H2S98 (3)O4—C10—C9116.9 (2)
O2—N1—O1123.7 (3)O4—C10—C11122.0 (2)
O2—N1—C19118.2 (3)C9—C10—C11121.2 (2)
O1—N1—C19118.0 (3)C10—C11—C12117.30 (19)
C15—N2—N3120.28 (19)C10—C11—C14123.2 (2)
C15—N2—H2N123 (2)C12—C11—C14119.5 (2)
N3—N2—H2N117 (2)C13—C12—C11122.0 (2)
C14—N3—N2115.35 (19)C13—C12—H12119.0
C6—C1—C2120.0 (3)C11—C12—H12119.0
C6—C1—H1120.0C12—C13—C8119.8 (2)
C2—C1—H1120.0C12—C13—H13120.1
C3—C2—C1120.4 (3)C8—C13—H13120.1
C3—C2—H2119.8N3—C14—C11122.3 (2)
C1—C2—H2119.8N3—C14—H14118.9
C2—C3—C4120.3 (2)C11—C14—H14118.9
C2—C3—H3119.8O3—C15—N2123.4 (2)
C4—C3—H3119.8O3—C15—C16119.8 (2)
C3—C4—C5119.6 (3)N2—C15—C16116.8 (2)
C3—C4—H4120.2C17—C16—C21119.4 (2)
C5—C4—H4120.2C17—C16—C15116.8 (2)
C4—C5—C6120.6 (3)C21—C16—C15123.9 (2)
C4—C5—H5119.7C16—C17—C18120.5 (3)
C6—C5—H5119.7C16—C17—H17119.7
C1—C6—C5119.1 (2)C18—C17—H17119.7
C1—C6—C7123.3 (2)C19—C18—C17118.4 (2)
C5—C6—C7117.6 (2)C19—C18—H18120.8
O5—C7—C6110.37 (19)C17—C18—H18120.8
O5—C7—H7A109.6C20—C19—C18122.5 (2)
C6—C7—H7A109.6C20—C19—N1118.6 (2)
O5—C7—H7B109.6C18—C19—N1118.9 (2)
C6—C7—H7B109.6C19—C20—C21118.4 (2)
H7A—C7—H7B108.1C19—C20—H20120.8
O5—C8—C9124.0 (2)C21—C20—H20120.8
O5—C8—C13116.4 (2)C20—C21—C16120.9 (2)
C9—C8—C13119.6 (2)C20—C21—H21119.6
C8—C9—C10120.1 (2)C16—C21—H21119.6
C15—N2—N3—C14173.2 (2)O5—C8—C13—C12179.4 (2)
C6—C1—C2—C30.1 (5)C9—C8—C13—C12−0.6 (4)
C1—C2—C3—C4−0.8 (5)N2—N3—C14—C11−179.85 (19)
C2—C3—C4—C50.7 (5)C10—C11—C14—N3−1.3 (3)
C3—C4—C5—C60.1 (4)C12—C11—C14—N3178.5 (2)
C2—C1—C6—C50.6 (4)N3—N2—C15—O30.1 (4)
C2—C1—C6—C7−179.7 (3)N3—N2—C15—C16−179.66 (19)
C4—C5—C6—C1−0.7 (4)O3—C15—C16—C17−4.8 (4)
C4—C5—C6—C7179.6 (2)N2—C15—C16—C17175.0 (2)
C8—O5—C7—C6−177.51 (18)O3—C15—C16—C21174.1 (3)
C1—C6—C7—O52.1 (3)N2—C15—C16—C21−6.2 (3)
C5—C6—C7—O5−178.1 (2)C21—C16—C17—C180.3 (4)
C7—O5—C8—C9−7.7 (3)C15—C16—C17—C18179.2 (2)
C7—O5—C8—C13172.3 (2)C16—C17—C18—C190.2 (4)
O5—C8—C9—C10−179.4 (2)C17—C18—C19—C20−0.3 (4)
C13—C8—C9—C100.5 (3)C17—C18—C19—N1180.0 (2)
C8—C9—C10—O4−179.2 (2)O2—N1—C19—C20−176.7 (3)
C8—C9—C10—C110.2 (3)O1—N1—C19—C203.9 (4)
O4—C10—C11—C12178.5 (2)O2—N1—C19—C183.0 (4)
C9—C10—C11—C12−0.9 (3)O1—N1—C19—C18−176.4 (3)
O4—C10—C11—C14−1.6 (3)C18—C19—C20—C21−0.1 (4)
C9—C10—C11—C14179.0 (2)N1—C19—C20—C21179.6 (2)
C10—C11—C12—C130.8 (3)C19—C20—C21—C160.6 (4)
C14—C11—C12—C13−179.1 (2)C17—C16—C21—C20−0.7 (4)
C11—C12—C13—C8−0.1 (4)C15—C16—C21—C20−179.6 (2)
D—H···AD—HH···AD···AD—H···A
O4—H4O···O1Si0.86 (2)2.57 (4)3.058 (3)117 (4)
O4—H4O···N30.86 (2)1.93 (3)2.670 (2)143 (4)
N2—H2N···O1S0.86 (2)2.01 (2)2.855 (3)166 (3)
O1S—H2S···O4ii0.87 (2)2.01 (2)2.860 (3)165 (4)
O1S—H1S···O3iii0.88 (2)1.80 (2)2.676 (3)175 (5)
C14—H14···O1S0.932.373.184 (2)146
C21—H21···O1S0.932.433.325 (3)161
C7—H7B···Cgiv0.972.693.472 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1–C6 ring

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4O⋯O1Si0.86 (2)2.57 (4)3.058 (3)117 (4)
O4—H4O⋯N30.86 (2)1.93 (3)2.670 (2)143 (4)
N2—H2N⋯O1S0.86 (2)2.01 (2)2.855 (3)166 (3)
O1S—H2S⋯O4ii0.87 (2)2.01 (2)2.860 (3)165 (4)
O1S—H1S⋯O3iii0.88 (2)1.80 (2)2.676 (3)175 (5)
C14—H14⋯O1S0.932.373.184 (2)146
C21—H21⋯O1S0.932.433.325 (3)161
C7—H7BCgiv0.972.693.472 (2)138

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antitumor activities of a series of novel quinoxalinhydrazides.

Authors:  Fedora Grande; Francesca Aiello; Osvaldo De Grazia; Antonella Brizzi; Antonio Garofalo; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2006-10-05       Impact factor: 3.641

3.  4-Chloro-N'-[(Z)-4-(dimethyl-amino)benzyl-idene]benzohydrazide mono-hydrate.

Authors:  Hoong-Kun Fun; P S Patil; Samuel Robinson Jebas; K V Sujith; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

4.  N'-[(E)-Furan-2-yl-methyl-idene]pyridine-3-carbohydrazide.

Authors:  Jessy Emmanuel; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-12
  4 in total
  2 in total

1.  N'-[(E)-4-Benz-yloxy-2-hy-droxy-benzyl-idene]-4-nitro-benzohydrazide di-methyl-formamide monosolvate.

Authors:  Bibitha Joseph; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-26

2.  Bis{μ-N-[(E)-4-benz-yloxy-2-oxidobenzyl-idene]-4-nitro-benzene-carbo-hydrazidato}bis-[di-aqua-nickel(II)] di-methyl-formamide tetra-solvate.

Authors:  Bibitha Joseph; M Sithambaresan; M R Prathapachandra Kurup; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.