| Literature DB >> 22590306 |
Bibitha Joseph, M Sithambaresan, M R Prathapachandra Kurup.
Abstract
The title compound, C(21)H(17)N(3)O(5)·H(2)O, exists in the keto form with an E conformation with respect to the azomethine double bond. The twist angles between the aromatic rings are in the range 4.67 (10)-17.54 (10)°. A water mol-ecule of solvation is present in the lattice. A conventional intra-molecular O-H⋯N hydrogen bond increases the rigidity of the mol-ecule. Inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen-bonding inter-actions establish a supra-molecular linkage among the mol-ecules in the crystal structure. There are also C-H⋯π inter-actions present.Entities:
Year: 2012 PMID: 22590306 PMCID: PMC3344544 DOI: 10.1107/S1600536812015401
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H17N3O5·H2O | |
| Monoclinic, | Mo |
| Hall symbol: P -2yc | Cell parameters from 4698 reflections |
| θ = 3.1–28.2° | |
| µ = 0.11 mm−1 | |
| β = 92.417 (4)° | Block, yellow |
| 0.30 × 0.28 × 0.25 mm | |
| Bruker Kappa APEXII CCD diffractometer | 1713 independent reflections |
| Radiation source: fine-focus sealed tube | 1663 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 25.0°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 7388 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.011 | |
| 1713 reflections | Δρmax = 0.14 e Å−3 |
| 288 parameters | Δρmin = −0.16 e Å−3 |
| 7 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.021 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.5580 (7) | 0.1667 (5) | 0.47190 (9) | 0.0986 (10) | |
| O2 | −0.5671 (7) | 0.4470 (5) | 0.50699 (9) | 0.0960 (9) | |
| O3 | 0.3371 (5) | 0.9071 (3) | 0.37071 (7) | 0.0673 (6) | |
| O4 | 0.8452 (4) | 1.0067 (3) | 0.26751 (6) | 0.0537 (5) | |
| O5 | 1.4446 (4) | 0.8132 (2) | 0.15654 (5) | 0.0428 (4) | |
| O1S | 0.3303 (5) | 0.1942 (3) | 0.31076 (7) | 0.0596 (5) | |
| N1 | −0.4868 (6) | 0.3450 (5) | 0.47795 (8) | 0.0623 (7) | |
| N2 | 0.3751 (4) | 0.6173 (3) | 0.33257 (6) | 0.0380 (4) | |
| N3 | 0.5600 (4) | 0.7064 (3) | 0.30472 (6) | 0.0370 (4) | |
| C1 | 1.8112 (6) | 0.8824 (4) | 0.09200 (9) | 0.0507 (6) | |
| H1 | 1.7528 | 0.7502 | 0.0983 | 0.061* | |
| C2 | 2.0020 (6) | 0.9151 (5) | 0.05996 (9) | 0.0593 (8) | |
| H2 | 2.0703 | 0.8044 | 0.0449 | 0.071* | |
| C3 | 2.0894 (6) | 1.1089 (5) | 0.05048 (9) | 0.0589 (8) | |
| H3 | 2.2186 | 1.1292 | 0.0293 | 0.071* | |
| C4 | 1.9873 (6) | 1.2742 (5) | 0.07214 (9) | 0.0600 (7) | |
| H4 | 2.0454 | 1.4061 | 0.0654 | 0.072* | |
| C5 | 1.7976 (6) | 1.2430 (4) | 0.10394 (9) | 0.0508 (6) | |
| H5 | 1.7282 | 1.3546 | 0.1186 | 0.061* | |
| C6 | 1.7094 (4) | 1.0458 (4) | 0.11423 (7) | 0.0377 (5) | |
| C7 | 1.5050 (5) | 1.0238 (4) | 0.14926 (7) | 0.0391 (5) | |
| H7A | 1.5901 | 1.0846 | 0.1747 | 0.047* | |
| H7B | 1.3264 | 1.0957 | 0.1421 | 0.047* | |
| C8 | 1.2534 (4) | 0.7701 (4) | 0.18637 (7) | 0.0355 (5) | |
| C9 | 1.1417 (5) | 0.9148 (3) | 0.21297 (7) | 0.0371 (5) | |
| H9 | 1.1963 | 1.0513 | 0.2108 | 0.044* | |
| C10 | 0.9484 (4) | 0.8566 (4) | 0.24291 (7) | 0.0345 (5) | |
| C11 | 0.8636 (4) | 0.6529 (4) | 0.24699 (7) | 0.0346 (5) | |
| C12 | 0.9782 (5) | 0.5107 (4) | 0.21932 (8) | 0.0430 (5) | |
| H12 | 0.9233 | 0.3742 | 0.2212 | 0.052* | |
| C13 | 1.1688 (5) | 0.5665 (4) | 0.18961 (8) | 0.0434 (5) | |
| H13 | 1.2415 | 0.4686 | 0.1717 | 0.052* | |
| C14 | 0.6665 (5) | 0.5843 (4) | 0.27812 (7) | 0.0388 (5) | |
| H14 | 0.6156 | 0.4467 | 0.2788 | 0.047* | |
| C15 | 0.2747 (5) | 0.7263 (4) | 0.36431 (8) | 0.0405 (5) | |
| C16 | 0.0762 (5) | 0.6172 (4) | 0.39327 (7) | 0.0382 (5) | |
| C17 | −0.0090 (6) | 0.7250 (4) | 0.42798 (8) | 0.0522 (6) | |
| H17 | 0.0583 | 0.8576 | 0.4326 | 0.063* | |
| C18 | −0.1943 (6) | 0.6370 (5) | 0.45600 (8) | 0.0567 (7) | |
| H18 | −0.2526 | 0.7092 | 0.4793 | 0.068* | |
| C19 | −0.2898 (5) | 0.4403 (4) | 0.44837 (7) | 0.0452 (6) | |
| C20 | −0.2096 (6) | 0.3294 (4) | 0.41418 (9) | 0.0524 (6) | |
| H20 | −0.2769 | 0.1967 | 0.4098 | 0.063* | |
| C21 | −0.0266 (6) | 0.4198 (4) | 0.38649 (8) | 0.0494 (6) | |
| H21 | 0.0285 | 0.3474 | 0.3630 | 0.059* | |
| H1S | 0.325 (10) | 0.105 (6) | 0.3313 (11) | 0.096 (14)* | |
| H2S | 0.169 (6) | 0.160 (6) | 0.2975 (12) | 0.099 (14)* | |
| H2N | 0.336 (6) | 0.489 (3) | 0.3287 (9) | 0.046 (7)* | |
| H4O | 0.730 (7) | 0.958 (7) | 0.2853 (11) | 0.090 (13)* |
| O1 | 0.123 (2) | 0.097 (2) | 0.0791 (17) | −0.0492 (18) | 0.0467 (15) | −0.0001 (15) |
| O2 | 0.1081 (19) | 0.108 (2) | 0.0771 (16) | −0.0053 (17) | 0.0631 (14) | −0.0006 (15) |
| O3 | 0.1030 (17) | 0.0439 (11) | 0.0571 (11) | −0.0205 (10) | 0.0283 (10) | −0.0053 (9) |
| O4 | 0.0609 (11) | 0.0409 (10) | 0.0623 (11) | −0.0109 (8) | 0.0384 (9) | −0.0097 (8) |
| O5 | 0.0446 (8) | 0.0385 (9) | 0.0470 (9) | 0.0009 (8) | 0.0217 (7) | 0.0040 (7) |
| O1S | 0.0790 (14) | 0.0383 (9) | 0.0638 (12) | −0.0155 (9) | 0.0283 (10) | −0.0050 (9) |
| N1 | 0.0571 (14) | 0.0820 (19) | 0.0491 (12) | −0.0043 (13) | 0.0172 (11) | 0.0143 (13) |
| N2 | 0.0434 (10) | 0.0318 (10) | 0.0400 (10) | −0.0066 (8) | 0.0150 (8) | 0.0050 (8) |
| N3 | 0.0357 (10) | 0.0364 (10) | 0.0398 (10) | −0.0075 (8) | 0.0127 (7) | 0.0060 (8) |
| C1 | 0.0523 (14) | 0.0453 (14) | 0.0560 (15) | −0.0009 (12) | 0.0202 (12) | 0.0008 (11) |
| C2 | 0.0609 (17) | 0.065 (2) | 0.0547 (15) | 0.0085 (14) | 0.0296 (13) | −0.0029 (13) |
| C3 | 0.0500 (14) | 0.081 (2) | 0.0477 (14) | 0.0040 (14) | 0.0227 (11) | 0.0143 (15) |
| C4 | 0.0598 (16) | 0.0594 (17) | 0.0624 (17) | −0.0058 (14) | 0.0212 (13) | 0.0237 (15) |
| C5 | 0.0517 (14) | 0.0444 (14) | 0.0579 (14) | 0.0025 (11) | 0.0195 (11) | 0.0093 (12) |
| C6 | 0.0303 (10) | 0.0455 (12) | 0.0378 (11) | 0.0008 (10) | 0.0089 (9) | 0.0078 (10) |
| C7 | 0.0378 (11) | 0.0382 (12) | 0.0420 (12) | 0.0016 (10) | 0.0118 (9) | 0.0024 (10) |
| C8 | 0.0334 (11) | 0.0391 (12) | 0.0346 (10) | 0.0020 (9) | 0.0097 (8) | 0.0037 (9) |
| C9 | 0.0390 (11) | 0.0304 (11) | 0.0426 (12) | −0.0034 (9) | 0.0106 (9) | 0.0016 (9) |
| C10 | 0.0353 (11) | 0.0327 (12) | 0.0362 (11) | −0.0026 (9) | 0.0100 (8) | −0.0011 (9) |
| C11 | 0.0312 (10) | 0.0356 (12) | 0.0374 (11) | −0.0039 (9) | 0.0066 (9) | 0.0019 (9) |
| C12 | 0.0457 (12) | 0.0300 (11) | 0.0542 (14) | −0.0021 (10) | 0.0139 (10) | 0.0002 (10) |
| C13 | 0.0454 (12) | 0.0365 (12) | 0.0497 (12) | 0.0018 (10) | 0.0174 (10) | −0.0052 (10) |
| C14 | 0.0382 (11) | 0.0338 (12) | 0.0452 (12) | −0.0049 (9) | 0.0102 (10) | 0.0073 (9) |
| C15 | 0.0459 (12) | 0.0373 (12) | 0.0389 (11) | −0.0050 (10) | 0.0095 (9) | 0.0028 (10) |
| C16 | 0.0393 (11) | 0.0419 (12) | 0.0341 (11) | 0.0032 (10) | 0.0082 (9) | 0.0054 (9) |
| C17 | 0.0611 (16) | 0.0511 (15) | 0.0455 (13) | −0.0088 (13) | 0.0140 (11) | −0.0051 (12) |
| C18 | 0.0648 (16) | 0.0659 (17) | 0.0409 (13) | −0.0006 (14) | 0.0201 (11) | −0.0074 (13) |
| C19 | 0.0388 (12) | 0.0614 (17) | 0.0362 (12) | 0.0002 (11) | 0.0100 (9) | 0.0102 (11) |
| C20 | 0.0569 (15) | 0.0443 (14) | 0.0575 (15) | −0.0059 (12) | 0.0198 (12) | 0.0053 (12) |
| C21 | 0.0580 (15) | 0.0452 (14) | 0.0468 (13) | −0.0061 (12) | 0.0232 (11) | −0.0028 (11) |
| O1—N1 | 1.224 (4) | C6—C7 | 1.500 (3) |
| O2—N1 | 1.211 (4) | C7—H7A | 0.9700 |
| O3—C15 | 1.231 (3) | C7—H7B | 0.9700 |
| O4—C10 | 1.355 (3) | C8—C9 | 1.384 (3) |
| O4—H4O | 0.86 (2) | C8—C13 | 1.392 (4) |
| O5—C8 | 1.355 (3) | C9—C10 | 1.388 (3) |
| O5—C7 | 1.425 (3) | C9—H9 | 0.9300 |
| O1S—H1S | 0.88 (2) | C10—C11 | 1.395 (3) |
| O1S—H2S | 0.873 (19) | C11—C12 | 1.400 (3) |
| N1—C19 | 1.476 (3) | C11—C14 | 1.446 (3) |
| N2—C15 | 1.336 (3) | C12—C13 | 1.370 (3) |
| N2—N3 | 1.386 (3) | C12—H12 | 0.9300 |
| N2—H2N | 0.863 (19) | C13—H13 | 0.9300 |
| N3—C14 | 1.277 (3) | C14—H14 | 0.9300 |
| C1—C6 | 1.375 (4) | C15—C16 | 1.508 (3) |
| C1—C2 | 1.394 (4) | C16—C17 | 1.383 (4) |
| C1—H1 | 0.9300 | C16—C21 | 1.388 (4) |
| C2—C3 | 1.367 (5) | C17—C18 | 1.388 (4) |
| C2—H2 | 0.9300 | C17—H17 | 0.9300 |
| C3—C4 | 1.376 (5) | C18—C19 | 1.377 (4) |
| C3—H3 | 0.9300 | C18—H18 | 0.9300 |
| C4—C5 | 1.383 (4) | C19—C20 | 1.372 (4) |
| C4—H4 | 0.9300 | C20—C21 | 1.381 (4) |
| C5—C6 | 1.394 (3) | C20—H20 | 0.9300 |
| C5—H5 | 0.9300 | C21—H21 | 0.9300 |
| C10—O4—H4O | 111 (3) | C8—C9—H9 | 119.9 |
| C8—O5—C7 | 116.93 (17) | C10—C9—H9 | 119.9 |
| H1S—O1S—H2S | 98 (3) | O4—C10—C9 | 116.9 (2) |
| O2—N1—O1 | 123.7 (3) | O4—C10—C11 | 122.0 (2) |
| O2—N1—C19 | 118.2 (3) | C9—C10—C11 | 121.2 (2) |
| O1—N1—C19 | 118.0 (3) | C10—C11—C12 | 117.30 (19) |
| C15—N2—N3 | 120.28 (19) | C10—C11—C14 | 123.2 (2) |
| C15—N2—H2N | 123 (2) | C12—C11—C14 | 119.5 (2) |
| N3—N2—H2N | 117 (2) | C13—C12—C11 | 122.0 (2) |
| C14—N3—N2 | 115.35 (19) | C13—C12—H12 | 119.0 |
| C6—C1—C2 | 120.0 (3) | C11—C12—H12 | 119.0 |
| C6—C1—H1 | 120.0 | C12—C13—C8 | 119.8 (2) |
| C2—C1—H1 | 120.0 | C12—C13—H13 | 120.1 |
| C3—C2—C1 | 120.4 (3) | C8—C13—H13 | 120.1 |
| C3—C2—H2 | 119.8 | N3—C14—C11 | 122.3 (2) |
| C1—C2—H2 | 119.8 | N3—C14—H14 | 118.9 |
| C2—C3—C4 | 120.3 (2) | C11—C14—H14 | 118.9 |
| C2—C3—H3 | 119.8 | O3—C15—N2 | 123.4 (2) |
| C4—C3—H3 | 119.8 | O3—C15—C16 | 119.8 (2) |
| C3—C4—C5 | 119.6 (3) | N2—C15—C16 | 116.8 (2) |
| C3—C4—H4 | 120.2 | C17—C16—C21 | 119.4 (2) |
| C5—C4—H4 | 120.2 | C17—C16—C15 | 116.8 (2) |
| C4—C5—C6 | 120.6 (3) | C21—C16—C15 | 123.9 (2) |
| C4—C5—H5 | 119.7 | C16—C17—C18 | 120.5 (3) |
| C6—C5—H5 | 119.7 | C16—C17—H17 | 119.7 |
| C1—C6—C5 | 119.1 (2) | C18—C17—H17 | 119.7 |
| C1—C6—C7 | 123.3 (2) | C19—C18—C17 | 118.4 (2) |
| C5—C6—C7 | 117.6 (2) | C19—C18—H18 | 120.8 |
| O5—C7—C6 | 110.37 (19) | C17—C18—H18 | 120.8 |
| O5—C7—H7A | 109.6 | C20—C19—C18 | 122.5 (2) |
| C6—C7—H7A | 109.6 | C20—C19—N1 | 118.6 (2) |
| O5—C7—H7B | 109.6 | C18—C19—N1 | 118.9 (2) |
| C6—C7—H7B | 109.6 | C19—C20—C21 | 118.4 (2) |
| H7A—C7—H7B | 108.1 | C19—C20—H20 | 120.8 |
| O5—C8—C9 | 124.0 (2) | C21—C20—H20 | 120.8 |
| O5—C8—C13 | 116.4 (2) | C20—C21—C16 | 120.9 (2) |
| C9—C8—C13 | 119.6 (2) | C20—C21—H21 | 119.6 |
| C8—C9—C10 | 120.1 (2) | C16—C21—H21 | 119.6 |
| C15—N2—N3—C14 | 173.2 (2) | O5—C8—C13—C12 | 179.4 (2) |
| C6—C1—C2—C3 | 0.1 (5) | C9—C8—C13—C12 | −0.6 (4) |
| C1—C2—C3—C4 | −0.8 (5) | N2—N3—C14—C11 | −179.85 (19) |
| C2—C3—C4—C5 | 0.7 (5) | C10—C11—C14—N3 | −1.3 (3) |
| C3—C4—C5—C6 | 0.1 (4) | C12—C11—C14—N3 | 178.5 (2) |
| C2—C1—C6—C5 | 0.6 (4) | N3—N2—C15—O3 | 0.1 (4) |
| C2—C1—C6—C7 | −179.7 (3) | N3—N2—C15—C16 | −179.66 (19) |
| C4—C5—C6—C1 | −0.7 (4) | O3—C15—C16—C17 | −4.8 (4) |
| C4—C5—C6—C7 | 179.6 (2) | N2—C15—C16—C17 | 175.0 (2) |
| C8—O5—C7—C6 | −177.51 (18) | O3—C15—C16—C21 | 174.1 (3) |
| C1—C6—C7—O5 | 2.1 (3) | N2—C15—C16—C21 | −6.2 (3) |
| C5—C6—C7—O5 | −178.1 (2) | C21—C16—C17—C18 | 0.3 (4) |
| C7—O5—C8—C9 | −7.7 (3) | C15—C16—C17—C18 | 179.2 (2) |
| C7—O5—C8—C13 | 172.3 (2) | C16—C17—C18—C19 | 0.2 (4) |
| O5—C8—C9—C10 | −179.4 (2) | C17—C18—C19—C20 | −0.3 (4) |
| C13—C8—C9—C10 | 0.5 (3) | C17—C18—C19—N1 | 180.0 (2) |
| C8—C9—C10—O4 | −179.2 (2) | O2—N1—C19—C20 | −176.7 (3) |
| C8—C9—C10—C11 | 0.2 (3) | O1—N1—C19—C20 | 3.9 (4) |
| O4—C10—C11—C12 | 178.5 (2) | O2—N1—C19—C18 | 3.0 (4) |
| C9—C10—C11—C12 | −0.9 (3) | O1—N1—C19—C18 | −176.4 (3) |
| O4—C10—C11—C14 | −1.6 (3) | C18—C19—C20—C21 | −0.1 (4) |
| C9—C10—C11—C14 | 179.0 (2) | N1—C19—C20—C21 | 179.6 (2) |
| C10—C11—C12—C13 | 0.8 (3) | C19—C20—C21—C16 | 0.6 (4) |
| C14—C11—C12—C13 | −179.1 (2) | C17—C16—C21—C20 | −0.7 (4) |
| C11—C12—C13—C8 | −0.1 (4) | C15—C16—C21—C20 | −179.6 (2) |
| H··· | ||||
| O4—H4 | 0.86 (2) | 2.57 (4) | 3.058 (3) | 117 (4) |
| O4—H4 | 0.86 (2) | 1.93 (3) | 2.670 (2) | 143 (4) |
| N2—H2 | 0.86 (2) | 2.01 (2) | 2.855 (3) | 166 (3) |
| O1 | 0.87 (2) | 2.01 (2) | 2.860 (3) | 165 (4) |
| O1 | 0.88 (2) | 1.80 (2) | 2.676 (3) | 175 (5) |
| C14—H14···O1 | 0.93 | 2.37 | 3.184 (2) | 146 |
| C21—H21···O1 | 0.93 | 2.43 | 3.325 (3) | 161 |
| C7—H7 | 0.97 | 2.69 | 3.472 (2) | 138 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C1–C6 ring
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4 | 0.86 (2) | 2.57 (4) | 3.058 (3) | 117 (4) |
| O4—H4 | 0.86 (2) | 1.93 (3) | 2.670 (2) | 143 (4) |
| N2—H2 | 0.86 (2) | 2.01 (2) | 2.855 (3) | 166 (3) |
| O1 | 0.87 (2) | 2.01 (2) | 2.860 (3) | 165 (4) |
| O1 | 0.88 (2) | 1.80 (2) | 2.676 (3) | 175 (5) |
| C14—H14⋯O1 | 0.93 | 2.37 | 3.184 (2) | 146 |
| C21—H21⋯O1 | 0.93 | 2.43 | 3.325 (3) | 161 |
| C7—H7 | 0.97 | 2.69 | 3.472 (2) | 138 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .