Literature DB >> 22590301

2-Amino-4-(4-chloro-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

Shaaban K Mohamed, Mehmet Akkurt, Antar A Abdelhamid, Kuldip Singh, M A Allahverdiyev.   

Abstract

In the title moleclue, C(16)H(13)ClN(2)O(2), the cyclo-hexene ring is in a sofa conformation. The pyran ring is essentialy planar [maximum deviation = 0.038 (2) Å] and forms a dihedral angle of 89.68 (10)° with the benzene ring. In the crystal, mol-ecules are linked by pairs of N-H⋯N hydrogen bonds, forming inversion dimers with R(2) (2)(12) ring motifs. These dimers are further linked by N-H⋯O hydrogen bonds into chains along [110]. Weak C-H⋯O hydrogen bonds are also present.

Entities:  

Year:  2012        PMID: 22590301      PMCID: PMC3344539          DOI: 10.1107/S1600536812015838

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical background to 2-amino-5-oxo-5,6,7,8-tetra­hydro-4H-chromene-3-carbonitrile derivatives, see: Gao et al. (2001 ▶); Xu et al. (2011 ▶); Luan et al. (2011 ▶); Wang & Zhu, (2007 ▶); O’Callaghan et al. (1995 ▶). For similar structures, see: Tu et al. (2001 ▶); Qiao et al. (2011 ▶); Kong et al. (2011 ▶); Hu et al. (2012 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For geometric analysis, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Etter et al. (1990 ▶).

Experimental

Crystal data

C16H13ClN2O2 M = 300.73 Monoclinic, a = 13.753 (4) Å b = 11.077 (3) Å c = 19.370 (6) Å β = 107.856 (5)° V = 2808.7 (14) Å3 Z = 8 Mo Kα radiation μ = 0.28 mm−1 T = 150 K 0.43 × 0.27 × 0.07 mm

Data collection

Bruker APEX 2000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.914, T max = 0.981 10643 measured reflections 2755 independent reflections 2124 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.122 S = 1.02 2755 reflections 190 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015838/lh5452sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015838/lh5452Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015838/lh5452Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13ClN2O2F(000) = 1248
Mr = 300.73Dx = 1.422 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 833 reflections
a = 13.753 (4) Åθ = 2.2–28.2°
b = 11.077 (3) ŵ = 0.28 mm1
c = 19.370 (6) ÅT = 150 K
β = 107.856 (5)°Plate, colourless
V = 2808.7 (14) Å30.43 × 0.27 × 0.07 mm
Z = 8
Bruker APEX 2000 CCD area-detector diffractometer2755 independent reflections
Radiation source: fine-focus sealed tube2124 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.063
phi and ω scansθmax = 26.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→16
Tmin = 0.914, Tmax = 0.981k = −13→13
10643 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0649P)2] where P = (Fo2 + 2Fc2)/3
2755 reflections(Δ/σ)max < 0.001
190 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.12556 (5)0.07141 (5)0.22343 (4)0.0510 (2)
O1−0.04515 (11)0.45923 (13)0.41373 (8)0.0395 (5)
O20.20240 (10)0.74455 (12)0.39806 (8)0.0320 (4)
N10.37218 (13)0.72339 (15)0.44001 (9)0.0347 (6)
N20.41870 (14)0.40760 (17)0.49094 (11)0.0440 (7)
C10.13012 (15)0.19541 (19)0.28039 (12)0.0337 (7)
C20.12955 (16)0.17534 (19)0.35014 (13)0.0374 (7)
C30.13788 (15)0.27229 (18)0.39614 (12)0.0332 (7)
C40.14684 (14)0.38895 (17)0.37333 (11)0.0274 (6)
C50.14494 (16)0.40667 (18)0.30168 (11)0.0348 (7)
C60.13673 (16)0.3107 (2)0.25501 (12)0.0378 (7)
C70.16120 (14)0.49363 (17)0.42613 (11)0.0270 (6)
C80.08175 (14)0.59034 (17)0.40049 (10)0.0274 (6)
C9−0.02395 (15)0.55980 (18)0.39594 (11)0.0311 (7)
C10−0.10332 (17)0.6565 (2)0.37309 (14)0.0470 (8)
C11−0.07795 (17)0.7496 (2)0.32396 (14)0.0465 (8)
C120.02871 (15)0.80147 (18)0.35920 (12)0.0360 (7)
C130.10411 (15)0.70407 (18)0.38660 (11)0.0286 (6)
C140.28249 (15)0.66677 (18)0.42763 (10)0.0285 (6)
C150.26669 (14)0.54985 (17)0.44117 (11)0.0271 (6)
C160.35154 (15)0.47326 (19)0.46903 (11)0.0304 (7)
H1A0.429600.683700.459100.0420*
H1B0.373700.800300.429100.0420*
H20.123500.095700.366500.0450*
H30.137500.258800.444500.0400*
H50.149400.486300.284700.0420*
H60.135600.323600.206300.0450*
H70.155700.461200.473000.0320*
H10A−0.110200.697300.416800.0560*
H10B−0.169900.618900.347400.0560*
H11A−0.128900.815600.314300.0560*
H11B−0.081100.711800.277000.0560*
H12A0.049200.850400.323200.0430*
H12B0.027500.855000.399800.0430*
U11U22U33U12U13U23
Cl10.0542 (4)0.0358 (4)0.0625 (4)0.0042 (3)0.0171 (3)−0.0181 (3)
O10.0357 (8)0.0312 (9)0.0545 (10)−0.0086 (7)0.0182 (7)0.0011 (7)
O20.0301 (8)0.0212 (7)0.0432 (8)−0.0032 (6)0.0090 (6)0.0040 (6)
N10.0288 (9)0.0249 (9)0.0471 (11)−0.0069 (7)0.0070 (8)0.0050 (8)
N20.0314 (10)0.0353 (11)0.0633 (13)−0.0011 (8)0.0116 (9)0.0139 (10)
C10.0238 (10)0.0288 (12)0.0460 (13)0.0027 (9)0.0071 (9)−0.0091 (10)
C20.0363 (12)0.0224 (11)0.0545 (14)−0.0011 (9)0.0155 (10)0.0015 (10)
C30.0345 (12)0.0275 (11)0.0383 (12)−0.0036 (9)0.0120 (9)0.0030 (9)
C40.0224 (10)0.0224 (10)0.0366 (11)−0.0036 (8)0.0078 (8)0.0000 (8)
C50.0405 (12)0.0240 (11)0.0390 (12)−0.0003 (9)0.0111 (10)0.0028 (9)
C60.0410 (12)0.0350 (13)0.0359 (12)0.0044 (10)0.0095 (10)−0.0001 (10)
C70.0279 (10)0.0222 (10)0.0309 (11)−0.0038 (8)0.0091 (8)0.0027 (8)
C80.0268 (10)0.0234 (11)0.0319 (11)−0.0009 (8)0.0089 (8)−0.0005 (8)
C90.0303 (11)0.0285 (12)0.0344 (11)−0.0032 (9)0.0099 (9)−0.0045 (9)
C100.0290 (12)0.0374 (13)0.0759 (18)0.0014 (10)0.0182 (11)0.0005 (12)
C110.0323 (13)0.0334 (13)0.0691 (17)0.0046 (10)0.0085 (12)0.0082 (12)
C120.0365 (12)0.0261 (11)0.0441 (13)0.0016 (9)0.0104 (10)0.0042 (10)
C130.0282 (11)0.0261 (11)0.0316 (11)−0.0014 (9)0.0095 (8)−0.0025 (9)
C140.0278 (11)0.0277 (11)0.0287 (11)−0.0018 (8)0.0066 (8)−0.0004 (8)
C150.0256 (10)0.0230 (10)0.0311 (11)−0.0035 (8)0.0064 (8)0.0008 (8)
C160.0273 (11)0.0262 (11)0.0356 (12)−0.0077 (9)0.0067 (9)0.0032 (9)
Cl1—C11.751 (2)C8—C131.343 (3)
O1—C91.227 (3)C9—C101.496 (3)
O2—C131.376 (3)C10—C111.515 (3)
O2—C141.377 (3)C11—C121.528 (3)
N1—C141.338 (3)C12—C131.478 (3)
N2—C161.150 (3)C14—C151.352 (3)
N1—H1B0.8800C15—C161.410 (3)
N1—H1A0.8800C2—H20.9500
C1—C61.381 (3)C3—H30.9500
C1—C21.372 (3)C5—H50.9500
C2—C31.378 (3)C6—H60.9500
C3—C41.383 (3)C7—H71.0000
C4—C71.518 (3)C10—H10A0.9900
C4—C51.394 (3)C10—H10B0.9900
C5—C61.378 (3)C11—H11A0.9900
C7—C81.502 (3)C11—H11B0.9900
C7—C151.523 (3)C12—H12A0.9900
C8—C91.469 (3)C12—H12B0.9900
C13—O2—C14118.95 (15)O2—C14—C15121.62 (19)
H1A—N1—H1B120.00C7—C15—C14123.71 (18)
C14—N1—H1A120.00C7—C15—C16117.10 (17)
C14—N1—H1B120.00C14—C15—C16119.17 (19)
Cl1—C1—C2118.92 (16)N2—C16—C15177.8 (2)
C2—C1—C6121.4 (2)C1—C2—H2120.00
Cl1—C1—C6119.64 (17)C3—C2—H2120.00
C1—C2—C3119.1 (2)C2—C3—H3119.00
C2—C3—C4121.3 (2)C4—C3—H3119.00
C3—C4—C7120.28 (18)C4—C5—H5119.00
C3—C4—C5118.24 (18)C6—C5—H5119.00
C5—C4—C7121.46 (17)C1—C6—H6121.00
C4—C5—C6121.16 (19)C5—C6—H6121.00
C1—C6—C5118.8 (2)C4—C7—H7108.00
C8—C7—C15109.00 (16)C8—C7—H7108.00
C4—C7—C8113.00 (17)C15—C7—H7108.00
C4—C7—C15111.14 (16)C9—C10—H10A109.00
C7—C8—C9117.51 (17)C9—C10—H10B109.00
C7—C8—C13123.17 (19)C11—C10—H10A109.00
C9—C8—C13119.15 (18)C11—C10—H10B109.00
O1—C9—C8120.54 (19)H10A—C10—H10B108.00
C8—C9—C10118.15 (18)C10—C11—H11A110.00
O1—C9—C10121.2 (2)C10—C11—H11B110.00
C9—C10—C11112.7 (2)C12—C11—H11A109.00
C10—C11—C12110.5 (2)C12—C11—H11B110.00
C11—C12—C13110.97 (17)H11A—C11—H11B108.00
O2—C13—C8123.17 (18)C11—C12—H12A109.00
O2—C13—C12111.50 (17)C11—C12—H12B109.00
C8—C13—C12125.3 (2)C13—C12—H12A109.00
N1—C14—C15127.46 (19)C13—C12—H12B109.00
O2—C14—N1110.92 (17)H12A—C12—H12B108.00
C13—O2—C14—N1−175.33 (16)C4—C7—C8—C13−117.7 (2)
C13—O2—C14—C154.4 (3)C15—C7—C8—C9−168.89 (17)
C14—O2—C13—C8−2.4 (3)C15—C7—C8—C136.4 (3)
C14—O2—C13—C12176.27 (17)C8—C7—C15—C16177.19 (17)
Cl1—C1—C2—C3177.03 (18)C13—C8—C9—C102.3 (3)
Cl1—C1—C6—C5−177.07 (18)C7—C8—C13—C12178.03 (19)
C2—C1—C6—C51.3 (3)C9—C8—C13—O2171.79 (18)
C6—C1—C2—C3−1.4 (3)C7—C8—C13—O2−3.5 (3)
C1—C2—C3—C4−0.1 (3)C7—C8—C9—O11.2 (3)
C2—C3—C4—C7−177.0 (2)C7—C8—C9—C10177.81 (18)
C2—C3—C4—C51.4 (3)C13—C8—C9—O1−174.36 (19)
C3—C4—C7—C15112.8 (2)C9—C8—C13—C12−6.7 (3)
C3—C4—C7—C8−124.3 (2)O1—C9—C10—C11−154.9 (2)
C3—C4—C5—C6−1.5 (3)C8—C9—C10—C1128.4 (3)
C5—C4—C7—C857.4 (3)C9—C10—C11—C12−53.7 (3)
C5—C4—C7—C15−65.5 (2)C10—C11—C12—C1348.8 (2)
C7—C4—C5—C6176.9 (2)C11—C12—C13—O2161.65 (18)
C4—C5—C6—C10.1 (3)C11—C12—C13—C8−19.7 (3)
C4—C7—C15—C14120.7 (2)O2—C14—C15—C7−0.6 (3)
C4—C7—C15—C16−57.6 (2)O2—C14—C15—C16177.71 (18)
C8—C7—C15—C14−4.5 (3)N1—C14—C15—C7179.11 (19)
C4—C7—C8—C967.0 (2)N1—C14—C15—C16−2.6 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.882.253.132 (3)177
N1—H1B···O1ii0.882.152.955 (2)151
C3—H3···N2iii0.952.483.226 (3)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N2i0.882.253.132 (3)177
N1—H1B⋯O1ii0.882.152.955 (2)151
C3—H3⋯N2iii0.952.483.226 (3)135

Symmetry codes: (i) ; (ii) ; (iii) .

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3.  2-Amino-4-(2-chloro-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile ethanol monosolvate.

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5.  2-Amino-4-(4-meth-oxy-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

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6.  Structure validation in chemical crystallography.

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1.  2-Amino-4-(4-chloro-phen-yl)-7,7-dimethyl-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile propan-2-one monosolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-31

2.  2-Amino-4-(4-methyl-phen-yl)-5-oxo-5,6,7,8-tetra-hydro-4H-chromene-3-carbonitrile.

Authors:  Shaaban K Mohamed; Mehmet Akkurt; Muhammad N Tahir; Antar A Abdelhamid; Mustafa R Albayati
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  2 in total

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