Literature DB >> 22590293

5-Bromo-N-(3,4-dimeth-oxy-benz-yl)pyridin-2-amine.

Jie Li, Lin-Yan Lu, Wang-Xing Shen, Jian-You Shi.   

Abstract

The title compound, C(14)H(15)BrN(2)O(2), an inter-mediate in drug discovery, was synthesized by the reaction of 5-bromo-pyridin-2-amine and 3,4-dimeth-oxy-benzaldehyde. In the crystal, molecules are linked via pairs ofN-H⋯N hydrogen bonds, leading to the formation of inversion dimers. A short contact occurs between the aryl H atom (ortho position from N) and the centroid of the benzene ring.

Entities:  

Year:  2012        PMID: 22590293      PMCID: PMC3344531          DOI: 10.1107/S1600536812015796

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti-tumor activity of related compounds, see: Kovala-Demertzi et al. (2007 ▶). For the anti-ulcer activity of related compounds, see: Cho et al. (2001 ▶). For the anti-viral activity of related compounds, see: Mavel et al. (2002 ▶). For the anti-microbial activity of related compounds, see: Yeong et al. (2004 ▶).

Experimental

Crystal data

C14H15BrN2O2 M = 323.18 Monoclinic, a = 6.3202 (2) Å b = 13.7940 (4) Å c = 15.8582 (6) Å β = 100.961 (4)° V = 1357.31 (8) Å3 Z = 4 Mo Kα radiation μ = 3.03 mm−1 T = 130 K 0.42 × 0.30 × 0.15 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.509, T max = 1.000 8188 measured reflections 2384 independent reflections 2055 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.060 S = 1.03 2384 reflections 174 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.49 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812015796/rk2346sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015796/rk2346Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015796/rk2346Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H15BrN2O2F(000) = 656
Mr = 323.18Dx = 1.582 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 3191 reflections
a = 6.3202 (2) Åθ = 3.0–29.3°
b = 13.7940 (4) ŵ = 3.03 mm1
c = 15.8582 (6) ÅT = 130 K
β = 100.961 (4)°Block, colourless
V = 1357.31 (8) Å30.42 × 0.30 × 0.15 mm
Z = 4
Agilent Xcalibur Eos diffractometer2384 independent reflections
Radiation source: Enhance (Mo) X-ray Source2055 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 16.0874 pixels mm-1θmax = 25.0°, θmin = 3.0°
ω–scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −15→16
Tmin = 0.509, Tmax = 1.000l = −18→15
8188 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.060H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0214P)2 + 1.0069P] where P = (Fo2 + 2Fc2)/3
2384 reflections(Δ/σ)max = 0.001
174 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.49 e Å3
Experimental. Absorption correction: CrysAlis Pro (Agilent Technologies, 2011) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.29705 (4)0.620125 (18)0.137802 (17)0.02180 (10)
O10.8391 (3)1.38453 (12)0.14221 (11)0.0181 (4)
O21.1319 (3)1.40582 (12)0.05188 (11)0.0185 (4)
N10.4443 (3)0.89466 (14)0.06525 (13)0.0164 (5)
N20.7225 (3)1.00200 (15)0.10747 (13)0.0178 (5)
H20.64821.04430.07220.021*
C10.4393 (4)0.74052 (17)0.13319 (15)0.0148 (5)
C20.3514 (4)0.80926 (17)0.07365 (16)0.0165 (5)
H2A0.21810.79510.03680.020*
C30.6333 (4)0.91502 (18)0.11831 (15)0.0147 (5)
C40.7300 (4)0.84807 (18)0.18126 (16)0.0177 (5)
H40.86170.86370.21860.021*
C50.6323 (4)0.76009 (18)0.18814 (16)0.0182 (6)
H50.69580.71380.22970.022*
C60.9380 (4)1.02800 (18)0.15245 (16)0.0176 (6)
H6A1.04360.98030.13870.021*
H6B0.94321.02630.21520.021*
C70.9971 (4)1.12777 (17)0.12650 (15)0.0154 (5)
C80.8867 (4)1.20894 (18)0.14866 (15)0.0153 (5)
H80.77671.20070.18140.018*
C90.9355 (4)1.30058 (17)0.12366 (15)0.0144 (5)
C101.0981 (4)1.31318 (18)0.07442 (15)0.0148 (5)
C111.2084 (4)1.23269 (18)0.05377 (16)0.0175 (6)
H111.31981.24040.02170.021*
C121.1576 (4)1.14027 (18)0.07967 (16)0.0175 (6)
H121.23421.08560.06490.021*
C130.6735 (4)1.37654 (19)0.19176 (17)0.0209 (6)
H13A0.56051.33290.16270.031*
H13B0.61161.44070.19790.031*
H13C0.73471.35060.24870.031*
C141.2631 (4)1.41893 (19)−0.01160 (17)0.0214 (6)
H14A1.21021.3772−0.06110.032*
H14B1.41261.40180.01300.032*
H14C1.25641.4868−0.03010.032*
U11U22U33U12U13U23
Br10.02543 (15)0.01635 (15)0.02437 (16)−0.00657 (11)0.00660 (11)0.00055 (11)
O10.0203 (9)0.0166 (9)0.0204 (10)0.0020 (7)0.0109 (8)0.0025 (8)
O20.0218 (9)0.0140 (9)0.0227 (10)−0.0044 (7)0.0116 (8)−0.0004 (7)
N10.0156 (10)0.0169 (11)0.0153 (11)−0.0021 (9)−0.0002 (9)0.0000 (9)
N20.0173 (10)0.0137 (11)0.0193 (12)−0.0020 (9)−0.0044 (9)0.0042 (9)
C10.0196 (12)0.0115 (13)0.0146 (13)−0.0018 (10)0.0067 (11)−0.0018 (10)
C20.0154 (12)0.0180 (13)0.0155 (14)−0.0032 (10)0.0017 (11)−0.0036 (11)
C30.0146 (12)0.0162 (13)0.0131 (13)−0.0010 (10)0.0024 (10)−0.0010 (10)
C40.0163 (12)0.0185 (13)0.0161 (14)−0.0007 (10)−0.0021 (11)0.0030 (11)
C50.0194 (13)0.0185 (14)0.0167 (14)0.0007 (11)0.0037 (11)0.0045 (11)
C60.0136 (12)0.0178 (14)0.0194 (14)−0.0014 (10)−0.0014 (11)0.0006 (11)
C70.0145 (12)0.0159 (13)0.0135 (13)−0.0030 (10)−0.0034 (10)−0.0010 (10)
C80.0136 (12)0.0197 (14)0.0124 (13)−0.0030 (10)0.0019 (10)0.0018 (10)
C90.0121 (12)0.0176 (13)0.0129 (13)0.0002 (10)0.0008 (10)−0.0018 (11)
C100.0138 (12)0.0168 (13)0.0129 (13)−0.0033 (10)0.0000 (10)−0.0018 (10)
C110.0145 (12)0.0213 (14)0.0180 (14)−0.0034 (11)0.0061 (11)−0.0018 (11)
C120.0157 (12)0.0150 (14)0.0212 (14)0.0003 (10)0.0018 (11)−0.0039 (11)
C130.0179 (12)0.0259 (15)0.0206 (14)0.0019 (11)0.0076 (11)−0.0013 (12)
C140.0215 (13)0.0210 (14)0.0236 (15)−0.0048 (11)0.0095 (12)0.0014 (12)
Br1—C11.897 (2)C6—H6B0.9900
O1—C91.366 (3)C6—C71.504 (3)
O1—C131.427 (3)C7—C81.399 (3)
O2—C101.355 (3)C7—C121.377 (3)
O2—C141.432 (3)C8—H80.9500
N1—C21.334 (3)C8—C91.377 (3)
N1—C31.353 (3)C9—C101.414 (3)
N2—H20.8800C10—C111.383 (3)
N2—C31.350 (3)C11—H110.9500
N2—C61.457 (3)C11—C121.395 (3)
C1—C21.378 (3)C12—H120.9500
C1—C51.384 (3)C13—H13A0.9800
C2—H2A0.9500C13—H13B0.9800
C3—C41.411 (3)C13—H13C0.9800
C4—H40.9500C14—H14A0.9800
C4—C51.375 (3)C14—H14B0.9800
C5—H50.9500C14—H14C0.9800
C6—H6A0.9900
C9—O1—C13117.18 (18)C12—C7—C8119.3 (2)
C10—O2—C14116.51 (18)C7—C8—H8119.6
C2—N1—C3118.3 (2)C9—C8—C7120.8 (2)
C3—N2—H2119.0C9—C8—H8119.6
C3—N2—C6122.0 (2)O1—C9—C8125.6 (2)
C6—N2—H2119.0O1—C9—C10114.5 (2)
C2—C1—Br1119.77 (18)C8—C9—C10119.8 (2)
C2—C1—C5119.3 (2)O2—C10—C9115.4 (2)
C5—C1—Br1120.93 (18)O2—C10—C11125.6 (2)
N1—C2—C1123.2 (2)C11—C10—C9118.9 (2)
N1—C2—H2A118.4C10—C11—H11119.7
C1—C2—H2A118.4C10—C11—C12120.6 (2)
N1—C3—C4121.1 (2)C12—C11—H11119.7
N2—C3—N1116.5 (2)C7—C12—C11120.5 (2)
N2—C3—C4122.4 (2)C7—C12—H12119.8
C3—C4—H4120.2C11—C12—H12119.8
C5—C4—C3119.5 (2)O1—C13—H13A109.5
C5—C4—H4120.2O1—C13—H13B109.5
C1—C5—H5120.7O1—C13—H13C109.5
C4—C5—C1118.5 (2)H13A—C13—H13B109.5
C4—C5—H5120.7H13A—C13—H13C109.5
N2—C6—H6A109.6H13B—C13—H13C109.5
N2—C6—H6B109.6O2—C14—H14A109.5
N2—C6—C7110.42 (19)O2—C14—H14B109.5
H6A—C6—H6B108.1O2—C14—H14C109.5
C7—C6—H6A109.6H14A—C14—H14B109.5
C7—C6—H6B109.6H14A—C14—H14C109.5
C8—C7—C6120.1 (2)H14B—C14—H14C109.5
C12—C7—C6120.6 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···N1i0.882.313.090 (3)149
C2—H2A···Cgi0.952.503.397 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C7–C12 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N1i0.882.313.090 (3)149
C2—H2ACgi0.952.503.397 (3)158

Symmetry code: (i) .

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