| Literature DB >> 22590293 |
Jie Li, Lin-Yan Lu, Wang-Xing Shen, Jian-You Shi.
Abstract
The title compound, C(14)H(15)BrN(2)O(2), an inter-mediate in drug discovery, was synthesized by the reaction of 5-bromo-pyridin-2-amine and 3,4-dimeth-oxy-benzaldehyde. In the crystal, molecules are linked via pairs ofN-H⋯N hydrogen bonds, leading to the formation of inversion dimers. A short contact occurs between the aryl H atom (ortho position from N) and the centroid of the benzene ring.Entities:
Year: 2012 PMID: 22590293 PMCID: PMC3344531 DOI: 10.1107/S1600536812015796
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H15BrN2O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3191 reflections |
| θ = 3.0–29.3° | |
| µ = 3.03 mm−1 | |
| β = 100.961 (4)° | Block, colourless |
| 0.42 × 0.30 × 0.15 mm | |
| Agilent Xcalibur Eos diffractometer | 2384 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2055 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0874 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
| ω–scans | |
| Absorption correction: multi-scan ( | |
| 8188 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2384 reflections | (Δ/σ)max = 0.001 |
| 174 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.49 e Å−3 |
| Experimental. Absorption correction: |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.29705 (4) | 0.620125 (18) | 0.137802 (17) | 0.02180 (10) | |
| O1 | 0.8391 (3) | 1.38453 (12) | 0.14221 (11) | 0.0181 (4) | |
| O2 | 1.1319 (3) | 1.40582 (12) | 0.05188 (11) | 0.0185 (4) | |
| N1 | 0.4443 (3) | 0.89466 (14) | 0.06525 (13) | 0.0164 (5) | |
| N2 | 0.7225 (3) | 1.00200 (15) | 0.10747 (13) | 0.0178 (5) | |
| H2 | 0.6482 | 1.0443 | 0.0722 | 0.021* | |
| C1 | 0.4393 (4) | 0.74052 (17) | 0.13319 (15) | 0.0148 (5) | |
| C2 | 0.3514 (4) | 0.80926 (17) | 0.07365 (16) | 0.0165 (5) | |
| H2A | 0.2181 | 0.7951 | 0.0368 | 0.020* | |
| C3 | 0.6333 (4) | 0.91502 (18) | 0.11831 (15) | 0.0147 (5) | |
| C4 | 0.7300 (4) | 0.84807 (18) | 0.18126 (16) | 0.0177 (5) | |
| H4 | 0.8617 | 0.8637 | 0.2186 | 0.021* | |
| C5 | 0.6323 (4) | 0.76009 (18) | 0.18814 (16) | 0.0182 (6) | |
| H5 | 0.6958 | 0.7138 | 0.2297 | 0.022* | |
| C6 | 0.9380 (4) | 1.02800 (18) | 0.15245 (16) | 0.0176 (6) | |
| H6A | 1.0436 | 0.9803 | 0.1387 | 0.021* | |
| H6B | 0.9432 | 1.0263 | 0.2152 | 0.021* | |
| C7 | 0.9971 (4) | 1.12777 (17) | 0.12650 (15) | 0.0154 (5) | |
| C8 | 0.8867 (4) | 1.20894 (18) | 0.14866 (15) | 0.0153 (5) | |
| H8 | 0.7767 | 1.2007 | 0.1814 | 0.018* | |
| C9 | 0.9355 (4) | 1.30058 (17) | 0.12366 (15) | 0.0144 (5) | |
| C10 | 1.0981 (4) | 1.31318 (18) | 0.07442 (15) | 0.0148 (5) | |
| C11 | 1.2084 (4) | 1.23269 (18) | 0.05377 (16) | 0.0175 (6) | |
| H11 | 1.3198 | 1.2404 | 0.0217 | 0.021* | |
| C12 | 1.1576 (4) | 1.14027 (18) | 0.07967 (16) | 0.0175 (6) | |
| H12 | 1.2342 | 1.0856 | 0.0649 | 0.021* | |
| C13 | 0.6735 (4) | 1.37654 (19) | 0.19176 (17) | 0.0209 (6) | |
| H13A | 0.5605 | 1.3329 | 0.1627 | 0.031* | |
| H13B | 0.6116 | 1.4407 | 0.1979 | 0.031* | |
| H13C | 0.7347 | 1.3506 | 0.2487 | 0.031* | |
| C14 | 1.2631 (4) | 1.41893 (19) | −0.01160 (17) | 0.0214 (6) | |
| H14A | 1.2102 | 1.3772 | −0.0611 | 0.032* | |
| H14B | 1.4126 | 1.4018 | 0.0130 | 0.032* | |
| H14C | 1.2564 | 1.4868 | −0.0301 | 0.032* |
| Br1 | 0.02543 (15) | 0.01635 (15) | 0.02437 (16) | −0.00657 (11) | 0.00660 (11) | 0.00055 (11) |
| O1 | 0.0203 (9) | 0.0166 (9) | 0.0204 (10) | 0.0020 (7) | 0.0109 (8) | 0.0025 (8) |
| O2 | 0.0218 (9) | 0.0140 (9) | 0.0227 (10) | −0.0044 (7) | 0.0116 (8) | −0.0004 (7) |
| N1 | 0.0156 (10) | 0.0169 (11) | 0.0153 (11) | −0.0021 (9) | −0.0002 (9) | 0.0000 (9) |
| N2 | 0.0173 (10) | 0.0137 (11) | 0.0193 (12) | −0.0020 (9) | −0.0044 (9) | 0.0042 (9) |
| C1 | 0.0196 (12) | 0.0115 (13) | 0.0146 (13) | −0.0018 (10) | 0.0067 (11) | −0.0018 (10) |
| C2 | 0.0154 (12) | 0.0180 (13) | 0.0155 (14) | −0.0032 (10) | 0.0017 (11) | −0.0036 (11) |
| C3 | 0.0146 (12) | 0.0162 (13) | 0.0131 (13) | −0.0010 (10) | 0.0024 (10) | −0.0010 (10) |
| C4 | 0.0163 (12) | 0.0185 (13) | 0.0161 (14) | −0.0007 (10) | −0.0021 (11) | 0.0030 (11) |
| C5 | 0.0194 (13) | 0.0185 (14) | 0.0167 (14) | 0.0007 (11) | 0.0037 (11) | 0.0045 (11) |
| C6 | 0.0136 (12) | 0.0178 (14) | 0.0194 (14) | −0.0014 (10) | −0.0014 (11) | 0.0006 (11) |
| C7 | 0.0145 (12) | 0.0159 (13) | 0.0135 (13) | −0.0030 (10) | −0.0034 (10) | −0.0010 (10) |
| C8 | 0.0136 (12) | 0.0197 (14) | 0.0124 (13) | −0.0030 (10) | 0.0019 (10) | 0.0018 (10) |
| C9 | 0.0121 (12) | 0.0176 (13) | 0.0129 (13) | 0.0002 (10) | 0.0008 (10) | −0.0018 (11) |
| C10 | 0.0138 (12) | 0.0168 (13) | 0.0129 (13) | −0.0033 (10) | 0.0000 (10) | −0.0018 (10) |
| C11 | 0.0145 (12) | 0.0213 (14) | 0.0180 (14) | −0.0034 (11) | 0.0061 (11) | −0.0018 (11) |
| C12 | 0.0157 (12) | 0.0150 (14) | 0.0212 (14) | 0.0003 (10) | 0.0018 (11) | −0.0039 (11) |
| C13 | 0.0179 (12) | 0.0259 (15) | 0.0206 (14) | 0.0019 (11) | 0.0076 (11) | −0.0013 (12) |
| C14 | 0.0215 (13) | 0.0210 (14) | 0.0236 (15) | −0.0048 (11) | 0.0095 (12) | 0.0014 (12) |
| Br1—C1 | 1.897 (2) | C6—H6B | 0.9900 |
| O1—C9 | 1.366 (3) | C6—C7 | 1.504 (3) |
| O1—C13 | 1.427 (3) | C7—C8 | 1.399 (3) |
| O2—C10 | 1.355 (3) | C7—C12 | 1.377 (3) |
| O2—C14 | 1.432 (3) | C8—H8 | 0.9500 |
| N1—C2 | 1.334 (3) | C8—C9 | 1.377 (3) |
| N1—C3 | 1.353 (3) | C9—C10 | 1.414 (3) |
| N2—H2 | 0.8800 | C10—C11 | 1.383 (3) |
| N2—C3 | 1.350 (3) | C11—H11 | 0.9500 |
| N2—C6 | 1.457 (3) | C11—C12 | 1.395 (3) |
| C1—C2 | 1.378 (3) | C12—H12 | 0.9500 |
| C1—C5 | 1.384 (3) | C13—H13A | 0.9800 |
| C2—H2A | 0.9500 | C13—H13B | 0.9800 |
| C3—C4 | 1.411 (3) | C13—H13C | 0.9800 |
| C4—H4 | 0.9500 | C14—H14A | 0.9800 |
| C4—C5 | 1.375 (3) | C14—H14B | 0.9800 |
| C5—H5 | 0.9500 | C14—H14C | 0.9800 |
| C6—H6A | 0.9900 | ||
| C9—O1—C13 | 117.18 (18) | C12—C7—C8 | 119.3 (2) |
| C10—O2—C14 | 116.51 (18) | C7—C8—H8 | 119.6 |
| C2—N1—C3 | 118.3 (2) | C9—C8—C7 | 120.8 (2) |
| C3—N2—H2 | 119.0 | C9—C8—H8 | 119.6 |
| C3—N2—C6 | 122.0 (2) | O1—C9—C8 | 125.6 (2) |
| C6—N2—H2 | 119.0 | O1—C9—C10 | 114.5 (2) |
| C2—C1—Br1 | 119.77 (18) | C8—C9—C10 | 119.8 (2) |
| C2—C1—C5 | 119.3 (2) | O2—C10—C9 | 115.4 (2) |
| C5—C1—Br1 | 120.93 (18) | O2—C10—C11 | 125.6 (2) |
| N1—C2—C1 | 123.2 (2) | C11—C10—C9 | 118.9 (2) |
| N1—C2—H2A | 118.4 | C10—C11—H11 | 119.7 |
| C1—C2—H2A | 118.4 | C10—C11—C12 | 120.6 (2) |
| N1—C3—C4 | 121.1 (2) | C12—C11—H11 | 119.7 |
| N2—C3—N1 | 116.5 (2) | C7—C12—C11 | 120.5 (2) |
| N2—C3—C4 | 122.4 (2) | C7—C12—H12 | 119.8 |
| C3—C4—H4 | 120.2 | C11—C12—H12 | 119.8 |
| C5—C4—C3 | 119.5 (2) | O1—C13—H13A | 109.5 |
| C5—C4—H4 | 120.2 | O1—C13—H13B | 109.5 |
| C1—C5—H5 | 120.7 | O1—C13—H13C | 109.5 |
| C4—C5—C1 | 118.5 (2) | H13A—C13—H13B | 109.5 |
| C4—C5—H5 | 120.7 | H13A—C13—H13C | 109.5 |
| N2—C6—H6A | 109.6 | H13B—C13—H13C | 109.5 |
| N2—C6—H6B | 109.6 | O2—C14—H14A | 109.5 |
| N2—C6—C7 | 110.42 (19) | O2—C14—H14B | 109.5 |
| H6A—C6—H6B | 108.1 | O2—C14—H14C | 109.5 |
| C7—C6—H6A | 109.6 | H14A—C14—H14B | 109.5 |
| C7—C6—H6B | 109.6 | H14A—C14—H14C | 109.5 |
| C8—C7—C6 | 120.1 (2) | H14B—C14—H14C | 109.5 |
| C12—C7—C6 | 120.6 (2) |
| H··· | ||||
| N2—H2···N1i | 0.88 | 2.31 | 3.090 (3) | 149 |
| C2—H2 | 0.95 | 2.50 | 3.397 (3) | 158 |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the C7–C12 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯N1i | 0.88 | 2.31 | 3.090 (3) | 149 |
| C2—H2 | 0.95 | 2.50 | 3.397 (3) | 158 |
Symmetry code: (i) .