Literature DB >> 22590279

5,6,7,5'-Tetra-meth-oxy-3',4'-methyl-ene-dioxy-flavone monohydrate.

Hou-Jin Li, Da-Lang Zhou, Ting-Juan Xu, Chi-Keung Lam, Wen-Jian Lan.   

Abstract

THE TITLE COMPOUND [SYSTEMATIC NAME: 5,6,7-trimeth-oxy-2-(7-meth-oxy-1,3-dihydro-2-benzofuran-5-yl)-4H-chromen-4-one monohydrate], C(20)H(18)O(8)·H(2)O, was isolated from the popular Chinese medicinal plant Entada phaseoloides. In the crystal, inversion-related mol-ecules are joined by pairs of weak C-H⋯O hydrogen bonds. The dimers are further inter-connected by a bridging water mol-ecule via weak C-H⋯O(water) and pairs of (O-H)(water)⋯O hydrogen bonds into a linear tape running parallel to the b axis.

Entities:  

Year:  2012        PMID: 22590279      PMCID: PMC3344517          DOI: 10.1107/S1600536812015139

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of 5,6,7,5′-tetra­meth­oxy-3′,4′-methyl­ene­dioxy­flavone, see: Chen et al. (1984 ▶); Vyas et al. (1986a ▶); Souza et al. (1995 ▶); Tomazela et al. (2000 ▶). For the NMR spectroscopic studies, see Vyas et al. (1986b ▶). For the biological activity of flavonoids, see: Genoux et al. (2011 ▶); Bodewes et al. (2011 ▶); Jacob et al. (2011 ▶); Veitch & Grayer (2011 ▶).

Experimental

Crystal data

C20H18O8·H2O M = 404.36 Triclinic, a = 9.3014 (17) Å b = 9.3146 (17) Å c = 11.009 (2) Å α = 105.413 (3)° β = 91.798 (3)° γ = 100.985 (3)° V = 899.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.12 mm−1 T = 173 K 0.41 × 0.35 × 0.32 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.772, T max = 1.000 6560 measured reflections 3181 independent reflections 2608 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.117 S = 1.07 3181 reflections 270 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812015139/bg2446sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812015139/bg2446Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812015139/bg2446Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 1
C20H18O8·H2OZ = 2
Mr = 404.36F(000) = 424
Triclinic, P1Dx = 1.493 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3014 (17) ÅCell parameters from 4354 reflections
b = 9.3146 (17) Åθ = 2.2–27.0°
c = 11.009 (2) ŵ = 0.12 mm1
α = 105.413 (3)°T = 173 K
β = 91.798 (3)°Block, colourless
γ = 100.985 (3)°0.41 × 0.35 × 0.32 mm
V = 899.3 (3) Å3
Bruker SMART 1000 CCD diffractometer3181 independent reflections
Radiation source: fine-focus sealed tube2608 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scanθmax = 25.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −11→11
Tmin = 0.772, Tmax = 1.000k = −11→11
6560 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0641P)2 + 0.3125P] where P = (Fo2 + 2Fc2)/3
3181 reflections(Δ/σ)max < 0.001
270 parametersΔρmax = 0.49 e Å3
4 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.53779 (12)0.48854 (12)0.20513 (10)0.0240 (3)
O1W0.4889 (2)−0.09163 (18)0.36332 (16)0.0525 (4)
H110.487 (3)−0.071 (4)0.295 (2)0.093 (11)*
H120.422 (2)−0.055 (5)0.3978 (15)0.23 (3)*
O20.22755 (13)0.59084 (13)0.53871 (11)0.0311 (3)
O30.14023 (13)0.30245 (14)0.51890 (12)0.0341 (3)
O40.25387 (13)0.08319 (13)0.34924 (11)0.0286 (3)
O50.44095 (14)0.03101 (13)0.16068 (11)0.0317 (3)
O60.93016 (15)0.40373 (14)−0.22376 (12)0.0388 (3)
O70.97888 (14)0.66696 (14)−0.17464 (12)0.0363 (3)
O80.85089 (14)0.85819 (13)0.01787 (12)0.0356 (3)
C20.59340 (17)0.39067 (18)0.11252 (14)0.0218 (3)
C30.56048 (18)0.23941 (18)0.09729 (15)0.0241 (4)
H3A0.60180.17530.03160.029*
C40.46578 (18)0.17052 (18)0.17582 (15)0.0237 (4)
C50.30091 (18)0.23401 (18)0.35496 (15)0.0234 (4)
C60.24590 (17)0.34069 (19)0.44266 (15)0.0244 (4)
C70.29046 (17)0.49663 (19)0.45016 (15)0.0243 (4)
C80.38842 (17)0.54320 (18)0.36968 (15)0.0229 (4)
H8A0.41820.64790.37380.027*
C90.44252 (17)0.43264 (18)0.28223 (14)0.0214 (3)
C100.40336 (17)0.27721 (18)0.27200 (15)0.0215 (3)
C110.1301 (2)0.0098 (2)0.2581 (2)0.0422 (5)
H11A0.1008−0.09710.25790.063*
H11B0.15710.01530.17390.063*
H11C0.04790.06100.28040.063*
C120.1733 (2)0.2124 (2)0.59780 (18)0.0384 (5)
H12A0.09010.19210.64760.058*
H12B0.26110.26710.65490.058*
H12C0.19160.11580.54530.058*
C130.2578 (2)0.7486 (2)0.54402 (18)0.0372 (4)
H13A0.20630.80380.61160.056*
H13B0.22400.76100.46290.056*
H13C0.36380.78930.56120.056*
C161.01507 (19)0.5318 (2)−0.25493 (16)0.0295 (4)
H16A0.99200.5253−0.34490.035*
H16B1.12130.5340−0.24130.035*
C1'0.69092 (17)0.46871 (18)0.03700 (15)0.0222 (3)
C2'0.75922 (19)0.38195 (19)−0.06075 (16)0.0270 (4)
H2'A0.74080.2740−0.08140.032*
C3'0.85314 (18)0.46137 (19)−0.12415 (15)0.0261 (4)
C4'0.88199 (18)0.61765 (19)−0.09635 (15)0.0257 (4)
C5'0.81543 (18)0.70520 (18)−0.00182 (15)0.0247 (4)
C6'0.71763 (17)0.62730 (18)0.06452 (15)0.0231 (4)
H6'A0.66860.68320.12940.028*
C8'0.7778 (2)0.95003 (19)0.11035 (17)0.0326 (4)
H8'A0.81321.05750.11480.049*
H8'B0.79820.93390.19310.049*
H8'C0.67160.92180.08680.049*
U11U22U33U12U13U23
O10.0278 (6)0.0202 (6)0.0242 (6)0.0049 (5)0.0109 (5)0.0057 (5)
O1W0.0677 (11)0.0415 (8)0.0526 (10)0.0061 (8)−0.0019 (8)0.0246 (7)
O20.0364 (7)0.0241 (6)0.0331 (7)0.0078 (5)0.0176 (5)0.0059 (5)
O30.0319 (7)0.0366 (7)0.0437 (7)0.0131 (5)0.0209 (6)0.0218 (6)
O40.0325 (6)0.0218 (6)0.0335 (7)0.0043 (5)0.0092 (5)0.0113 (5)
O50.0449 (7)0.0193 (6)0.0331 (7)0.0082 (5)0.0145 (6)0.0087 (5)
O60.0485 (8)0.0321 (7)0.0413 (7)0.0131 (6)0.0296 (6)0.0134 (6)
O70.0420 (7)0.0320 (7)0.0404 (7)0.0088 (6)0.0233 (6)0.0162 (6)
O80.0439 (8)0.0223 (6)0.0413 (7)0.0049 (5)0.0173 (6)0.0097 (5)
C20.0217 (8)0.0242 (8)0.0195 (8)0.0070 (6)0.0031 (6)0.0041 (6)
C30.0261 (8)0.0234 (8)0.0235 (8)0.0075 (7)0.0064 (7)0.0057 (7)
C40.0254 (8)0.0226 (8)0.0236 (8)0.0055 (7)0.0018 (7)0.0067 (7)
C50.0227 (8)0.0223 (8)0.0266 (8)0.0039 (6)0.0024 (7)0.0098 (7)
C60.0217 (8)0.0279 (9)0.0265 (8)0.0058 (7)0.0074 (7)0.0114 (7)
C70.0228 (8)0.0264 (9)0.0234 (8)0.0071 (7)0.0038 (7)0.0047 (7)
C80.0237 (8)0.0203 (8)0.0238 (8)0.0034 (6)0.0036 (6)0.0053 (6)
C90.0206 (8)0.0237 (8)0.0206 (8)0.0031 (6)0.0041 (6)0.0081 (6)
C100.0213 (8)0.0228 (8)0.0214 (8)0.0056 (6)0.0027 (6)0.0069 (6)
C110.0330 (10)0.0297 (10)0.0580 (13)−0.0048 (8)0.0017 (9)0.0104 (9)
C120.0452 (11)0.0461 (11)0.0305 (9)0.0121 (9)0.0147 (8)0.0186 (9)
C130.0461 (11)0.0255 (9)0.0400 (10)0.0096 (8)0.0178 (9)0.0057 (8)
C160.0284 (9)0.0347 (10)0.0293 (9)0.0097 (7)0.0120 (7)0.0125 (7)
C1'0.0206 (8)0.0251 (8)0.0213 (8)0.0045 (6)0.0027 (6)0.0072 (7)
C2'0.0310 (9)0.0239 (8)0.0284 (9)0.0079 (7)0.0092 (7)0.0086 (7)
C3'0.0273 (9)0.0299 (9)0.0239 (8)0.0108 (7)0.0083 (7)0.0083 (7)
C4'0.0240 (8)0.0314 (9)0.0250 (8)0.0058 (7)0.0052 (7)0.0134 (7)
C5'0.0267 (8)0.0231 (8)0.0253 (8)0.0047 (7)0.0024 (7)0.0085 (7)
C6'0.0232 (8)0.0258 (8)0.0213 (8)0.0076 (7)0.0042 (6)0.0063 (7)
C8'0.0386 (10)0.0241 (9)0.0339 (9)0.0072 (7)0.0044 (8)0.0056 (7)
O1—C21.3627 (18)C8—C91.393 (2)
O1—C91.3723 (19)C8—H8A0.9500
O1W—H110.829 (17)C9—C101.397 (2)
O1W—H120.826 (19)C11—H11A0.9800
O2—C71.3564 (19)C11—H11B0.9800
O2—C131.427 (2)C11—H11C0.9800
O3—C61.369 (2)C12—H12A0.9800
O3—C121.422 (2)C12—H12B0.9800
O4—C51.3732 (19)C12—H12C0.9800
O4—C111.436 (2)C13—H13A0.9800
O5—C41.240 (2)C13—H13B0.9800
O6—C3'1.374 (2)C13—H13C0.9800
O6—C161.428 (2)C16—H16A0.9900
O7—C4'1.367 (2)C16—H16B0.9900
O7—C161.438 (2)C1'—C6'1.398 (2)
O8—C5'1.356 (2)C1'—C2'1.411 (2)
O8—C8'1.426 (2)C2'—C3'1.365 (2)
C2—C31.347 (2)C2'—H2'A0.9500
C2—C1'1.470 (2)C3'—C4'1.376 (2)
C3—C41.436 (2)C4'—C5'1.383 (2)
C3—H3A0.9500C5'—C6'1.400 (2)
C4—C101.465 (2)C6'—H6'A0.9500
C5—C61.377 (2)C8'—H8'A0.9800
C5—C101.417 (2)C8'—H8'B0.9800
C6—C71.412 (2)C8'—H8'C0.9800
C7—C81.381 (2)
C2—O1—C9119.79 (12)O3—C12—H12B109.5
H11—O1W—H12103 (3)H12A—C12—H12B109.5
C7—O2—C13117.60 (13)O3—C12—H12C109.5
C6—O3—C12116.78 (13)H12A—C12—H12C109.5
C5—O4—C11112.69 (13)H12B—C12—H12C109.5
C3'—O6—C16106.39 (13)O2—C13—H13A109.5
C4'—O7—C16105.55 (13)O2—C13—H13B109.5
C5'—O8—C8'117.93 (13)H13A—C13—H13B109.5
C3—C2—O1121.29 (14)O2—C13—H13C109.5
C3—C2—C1'125.84 (14)H13A—C13—H13C109.5
O1—C2—C1'112.86 (13)H13B—C13—H13C109.5
C2—C3—C4123.01 (15)O6—C16—O7107.82 (13)
C2—C3—H3A118.5O6—C16—H16A110.1
C4—C3—H3A118.5O7—C16—H16A110.1
O5—C4—C3121.05 (15)O6—C16—H16B110.1
O5—C4—C10124.15 (15)O7—C16—H16B110.1
C3—C4—C10114.80 (14)H16A—C16—H16B108.5
O4—C5—C6118.34 (14)C6'—C1'—C2'120.90 (15)
O4—C5—C10120.27 (14)C6'—C1'—C2119.88 (14)
C6—C5—C10121.39 (14)C2'—C1'—C2119.20 (14)
O3—C6—C5122.89 (14)C3'—C2'—C1'116.46 (15)
O3—C6—C7117.07 (14)C3'—C2'—H2'A121.8
C5—C6—C7119.88 (15)C1'—C2'—H2'A121.8
O2—C7—C8124.83 (15)C2'—C3'—O6127.60 (15)
O2—C7—C6114.65 (14)C2'—C3'—C4'123.06 (15)
C8—C7—C6120.50 (15)O6—C3'—C4'109.34 (14)
C7—C8—C9118.29 (15)O7—C4'—C3'110.80 (14)
C7—C8—H8A120.9O7—C4'—C5'127.57 (15)
C9—C8—H8A120.9C3'—C4'—C5'121.61 (15)
O1—C9—C8114.47 (14)O8—C5'—C4'117.04 (15)
O1—C9—C10122.08 (14)O8—C5'—C6'126.13 (15)
C8—C9—C10123.45 (14)C4'—C5'—C6'116.82 (15)
C9—C10—C5116.48 (14)C1'—C6'—C5'121.13 (15)
C9—C10—C4118.96 (14)C1'—C6'—H6'A119.4
C5—C10—C4124.54 (14)C5'—C6'—H6'A119.4
O4—C11—H11A109.5O8—C8'—H8'A109.5
O4—C11—H11B109.5O8—C8'—H8'B109.5
H11A—C11—H11B109.5H8'A—C8'—H8'B109.5
O4—C11—H11C109.5O8—C8'—H8'C109.5
H11A—C11—H11C109.5H8'A—C8'—H8'C109.5
H11B—C11—H11C109.5H8'B—C8'—H8'C109.5
O3—C12—H12A109.5
C9—O1—C2—C3−2.1 (2)C6—C5—C10—C4−179.51 (14)
C9—O1—C2—C1'178.78 (12)O5—C4—C10—C9178.31 (15)
O1—C2—C3—C40.1 (2)C3—C4—C10—C9−1.8 (2)
C1'—C2—C3—C4179.04 (14)O5—C4—C10—C5−3.6 (3)
C2—C3—C4—O5−178.26 (15)C3—C4—C10—C5176.28 (14)
C2—C3—C4—C101.8 (2)C3'—O6—C16—O7−3.22 (18)
C11—O4—C5—C693.10 (18)C4'—O7—C16—O62.76 (18)
C11—O4—C5—C10−86.81 (18)C3—C2—C1'—C6'−178.88 (15)
C12—O3—C6—C557.9 (2)O1—C2—C1'—C6'0.2 (2)
C12—O3—C6—C7−126.79 (17)C3—C2—C1'—C2'−0.4 (2)
O4—C5—C6—O3−4.0 (2)O1—C2—C1'—C2'178.63 (13)
C10—C5—C6—O3175.91 (14)C6'—C1'—C2'—C3'1.0 (2)
O4—C5—C6—C7−179.23 (14)C2—C1'—C2'—C3'−177.43 (14)
C10—C5—C6—C70.7 (2)C1'—C2'—C3'—O6−178.60 (16)
C13—O2—C7—C84.0 (2)C1'—C2'—C3'—C4'0.0 (2)
C13—O2—C7—C6−174.70 (15)C16—O6—C3'—C2'−178.74 (17)
O3—C6—C7—O23.6 (2)C16—O6—C3'—C4'2.46 (18)
C5—C6—C7—O2179.09 (14)C16—O7—C4'—C3'−1.28 (19)
O3—C6—C7—C8−175.18 (14)C16—O7—C4'—C5'179.85 (16)
C5—C6—C7—C80.3 (2)C2'—C3'—C4'—O7−179.62 (15)
O2—C7—C8—C9−179.16 (14)O6—C3'—C4'—O7−0.7 (2)
C6—C7—C8—C9−0.5 (2)C2'—C3'—C4'—C5'−0.7 (3)
C2—O1—C9—C8−177.44 (13)O6—C3'—C4'—C5'178.20 (15)
C2—O1—C9—C102.1 (2)C8'—O8—C5'—C4'176.80 (14)
C7—C8—C9—O1179.29 (13)C8'—O8—C5'—C6'−3.2 (2)
C7—C8—C9—C10−0.3 (2)O7—C4'—C5'—O8−1.0 (3)
O1—C9—C10—C5−178.32 (13)C3'—C4'—C5'—O8−179.78 (15)
C8—C9—C10—C51.2 (2)O7—C4'—C5'—C6'178.95 (15)
O1—C9—C10—C4−0.1 (2)C3'—C4'—C5'—C6'0.2 (2)
C8—C9—C10—C4179.43 (14)C2'—C1'—C6'—C5'−1.5 (2)
O4—C5—C10—C9178.51 (13)C2—C1'—C6'—C5'176.92 (14)
C6—C5—C10—C9−1.4 (2)O8—C5'—C6'—C1'−179.14 (15)
O4—C5—C10—C40.4 (2)C4'—C5'—C6'—C1'0.9 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H11···O50.83 (2)2.03 (2)2.823 (2)160 (3)
O1W—H12···O40.83 (2)2.33 (3)2.987 (2)137 (3)
C3—H3A···O5i0.952.413.255 (2)147
C8—H8A···O1Wii0.952.423.372 (2)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H11⋯O50.83 (2)2.03 (2)2.823 (2)160 (3)
O1W—H12⋯O40.83 (2)2.33 (3)2.987 (2)137 (3)
C3—H3A⋯O5i0.952.413.255 (2)147
C8—H8A⋯O1Wii0.952.423.372 (2)175

Symmetry codes: (i) ; (ii) .

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