| Literature DB >> 22590279 |
Hou-Jin Li, Da-Lang Zhou, Ting-Juan Xu, Chi-Keung Lam, Wen-Jian Lan.
Abstract
THE TITLE COMPOUND [SYSTEMATIC NAME: 5,6,7-trimeth-oxy-2-(7-meth-oxy-1,3-dihydro-2-benzofuran-5-yl)-4H-chromen-4-one monohydrate], C(20)H(18)O(8)·H(2)O, was isolated from the popular Chinese medicinal plant Entada phaseoloides. In the crystal, inversion-related mol-ecules are joined by pairs of weak C-H⋯O hydrogen bonds. The dimers are further inter-connected by a bridging water mol-ecule via weak C-H⋯O(water) and pairs of (O-H)(water)⋯O hydrogen bonds into a linear tape running parallel to the b axis.Entities:
Year: 2012 PMID: 22590279 PMCID: PMC3344517 DOI: 10.1107/S1600536812015139
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H18O8·H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4354 reflections | |
| θ = 2.2–27.0° | |
| µ = 0.12 mm−1 | |
| α = 105.413 (3)° | |
| β = 91.798 (3)° | Block, colourless |
| γ = 100.985 (3)° | 0.41 × 0.35 × 0.32 mm |
| Bruker SMART 1000 CCD diffractometer | 3181 independent reflections |
| Radiation source: fine-focus sealed tube | 2608 reflections with |
| Graphite monochromator | |
| φ and ω scan | θmax = 25.3°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 6560 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3181 reflections | (Δ/σ)max < 0.001 |
| 270 parameters | Δρmax = 0.49 e Å−3 |
| 4 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.53779 (12) | 0.48854 (12) | 0.20513 (10) | 0.0240 (3) | |
| O1W | 0.4889 (2) | −0.09163 (18) | 0.36332 (16) | 0.0525 (4) | |
| H11 | 0.487 (3) | −0.071 (4) | 0.295 (2) | 0.093 (11)* | |
| H12 | 0.422 (2) | −0.055 (5) | 0.3978 (15) | 0.23 (3)* | |
| O2 | 0.22755 (13) | 0.59084 (13) | 0.53871 (11) | 0.0311 (3) | |
| O3 | 0.14023 (13) | 0.30245 (14) | 0.51890 (12) | 0.0341 (3) | |
| O4 | 0.25387 (13) | 0.08319 (13) | 0.34924 (11) | 0.0286 (3) | |
| O5 | 0.44095 (14) | 0.03101 (13) | 0.16068 (11) | 0.0317 (3) | |
| O6 | 0.93016 (15) | 0.40373 (14) | −0.22376 (12) | 0.0388 (3) | |
| O7 | 0.97888 (14) | 0.66696 (14) | −0.17464 (12) | 0.0363 (3) | |
| O8 | 0.85089 (14) | 0.85819 (13) | 0.01787 (12) | 0.0356 (3) | |
| C2 | 0.59340 (17) | 0.39067 (18) | 0.11252 (14) | 0.0218 (3) | |
| C3 | 0.56048 (18) | 0.23941 (18) | 0.09729 (15) | 0.0241 (4) | |
| H3A | 0.6018 | 0.1753 | 0.0316 | 0.029* | |
| C4 | 0.46578 (18) | 0.17052 (18) | 0.17582 (15) | 0.0237 (4) | |
| C5 | 0.30091 (18) | 0.23401 (18) | 0.35496 (15) | 0.0234 (4) | |
| C6 | 0.24590 (17) | 0.34069 (19) | 0.44266 (15) | 0.0244 (4) | |
| C7 | 0.29046 (17) | 0.49663 (19) | 0.45016 (15) | 0.0243 (4) | |
| C8 | 0.38842 (17) | 0.54320 (18) | 0.36968 (15) | 0.0229 (4) | |
| H8A | 0.4182 | 0.6479 | 0.3738 | 0.027* | |
| C9 | 0.44252 (17) | 0.43264 (18) | 0.28223 (14) | 0.0214 (3) | |
| C10 | 0.40336 (17) | 0.27721 (18) | 0.27200 (15) | 0.0215 (3) | |
| C11 | 0.1301 (2) | 0.0098 (2) | 0.2581 (2) | 0.0422 (5) | |
| H11A | 0.1008 | −0.0971 | 0.2579 | 0.063* | |
| H11B | 0.1571 | 0.0153 | 0.1739 | 0.063* | |
| H11C | 0.0479 | 0.0610 | 0.2804 | 0.063* | |
| C12 | 0.1733 (2) | 0.2124 (2) | 0.59780 (18) | 0.0384 (5) | |
| H12A | 0.0901 | 0.1921 | 0.6476 | 0.058* | |
| H12B | 0.2611 | 0.2671 | 0.6549 | 0.058* | |
| H12C | 0.1916 | 0.1158 | 0.5453 | 0.058* | |
| C13 | 0.2578 (2) | 0.7486 (2) | 0.54402 (18) | 0.0372 (4) | |
| H13A | 0.2063 | 0.8038 | 0.6116 | 0.056* | |
| H13B | 0.2240 | 0.7610 | 0.4629 | 0.056* | |
| H13C | 0.3638 | 0.7893 | 0.5612 | 0.056* | |
| C16 | 1.01507 (19) | 0.5318 (2) | −0.25493 (16) | 0.0295 (4) | |
| H16A | 0.9920 | 0.5253 | −0.3449 | 0.035* | |
| H16B | 1.1213 | 0.5340 | −0.2413 | 0.035* | |
| C1' | 0.69092 (17) | 0.46871 (18) | 0.03700 (15) | 0.0222 (3) | |
| C2' | 0.75922 (19) | 0.38195 (19) | −0.06075 (16) | 0.0270 (4) | |
| H2'A | 0.7408 | 0.2740 | −0.0814 | 0.032* | |
| C3' | 0.85314 (18) | 0.46137 (19) | −0.12415 (15) | 0.0261 (4) | |
| C4' | 0.88199 (18) | 0.61765 (19) | −0.09635 (15) | 0.0257 (4) | |
| C5' | 0.81543 (18) | 0.70520 (18) | −0.00182 (15) | 0.0247 (4) | |
| C6' | 0.71763 (17) | 0.62730 (18) | 0.06452 (15) | 0.0231 (4) | |
| H6'A | 0.6686 | 0.6832 | 0.1294 | 0.028* | |
| C8' | 0.7778 (2) | 0.95003 (19) | 0.11035 (17) | 0.0326 (4) | |
| H8'A | 0.8132 | 1.0575 | 0.1148 | 0.049* | |
| H8'B | 0.7982 | 0.9339 | 0.1931 | 0.049* | |
| H8'C | 0.6716 | 0.9218 | 0.0868 | 0.049* |
| O1 | 0.0278 (6) | 0.0202 (6) | 0.0242 (6) | 0.0049 (5) | 0.0109 (5) | 0.0057 (5) |
| O1W | 0.0677 (11) | 0.0415 (8) | 0.0526 (10) | 0.0061 (8) | −0.0019 (8) | 0.0246 (7) |
| O2 | 0.0364 (7) | 0.0241 (6) | 0.0331 (7) | 0.0078 (5) | 0.0176 (5) | 0.0059 (5) |
| O3 | 0.0319 (7) | 0.0366 (7) | 0.0437 (7) | 0.0131 (5) | 0.0209 (6) | 0.0218 (6) |
| O4 | 0.0325 (6) | 0.0218 (6) | 0.0335 (7) | 0.0043 (5) | 0.0092 (5) | 0.0113 (5) |
| O5 | 0.0449 (7) | 0.0193 (6) | 0.0331 (7) | 0.0082 (5) | 0.0145 (6) | 0.0087 (5) |
| O6 | 0.0485 (8) | 0.0321 (7) | 0.0413 (7) | 0.0131 (6) | 0.0296 (6) | 0.0134 (6) |
| O7 | 0.0420 (7) | 0.0320 (7) | 0.0404 (7) | 0.0088 (6) | 0.0233 (6) | 0.0162 (6) |
| O8 | 0.0439 (8) | 0.0223 (6) | 0.0413 (7) | 0.0049 (5) | 0.0173 (6) | 0.0097 (5) |
| C2 | 0.0217 (8) | 0.0242 (8) | 0.0195 (8) | 0.0070 (6) | 0.0031 (6) | 0.0041 (6) |
| C3 | 0.0261 (8) | 0.0234 (8) | 0.0235 (8) | 0.0075 (7) | 0.0064 (7) | 0.0057 (7) |
| C4 | 0.0254 (8) | 0.0226 (8) | 0.0236 (8) | 0.0055 (7) | 0.0018 (7) | 0.0067 (7) |
| C5 | 0.0227 (8) | 0.0223 (8) | 0.0266 (8) | 0.0039 (6) | 0.0024 (7) | 0.0098 (7) |
| C6 | 0.0217 (8) | 0.0279 (9) | 0.0265 (8) | 0.0058 (7) | 0.0074 (7) | 0.0114 (7) |
| C7 | 0.0228 (8) | 0.0264 (9) | 0.0234 (8) | 0.0071 (7) | 0.0038 (7) | 0.0047 (7) |
| C8 | 0.0237 (8) | 0.0203 (8) | 0.0238 (8) | 0.0034 (6) | 0.0036 (6) | 0.0053 (6) |
| C9 | 0.0206 (8) | 0.0237 (8) | 0.0206 (8) | 0.0031 (6) | 0.0041 (6) | 0.0081 (6) |
| C10 | 0.0213 (8) | 0.0228 (8) | 0.0214 (8) | 0.0056 (6) | 0.0027 (6) | 0.0069 (6) |
| C11 | 0.0330 (10) | 0.0297 (10) | 0.0580 (13) | −0.0048 (8) | 0.0017 (9) | 0.0104 (9) |
| C12 | 0.0452 (11) | 0.0461 (11) | 0.0305 (9) | 0.0121 (9) | 0.0147 (8) | 0.0186 (9) |
| C13 | 0.0461 (11) | 0.0255 (9) | 0.0400 (10) | 0.0096 (8) | 0.0178 (9) | 0.0057 (8) |
| C16 | 0.0284 (9) | 0.0347 (10) | 0.0293 (9) | 0.0097 (7) | 0.0120 (7) | 0.0125 (7) |
| C1' | 0.0206 (8) | 0.0251 (8) | 0.0213 (8) | 0.0045 (6) | 0.0027 (6) | 0.0072 (7) |
| C2' | 0.0310 (9) | 0.0239 (8) | 0.0284 (9) | 0.0079 (7) | 0.0092 (7) | 0.0086 (7) |
| C3' | 0.0273 (9) | 0.0299 (9) | 0.0239 (8) | 0.0108 (7) | 0.0083 (7) | 0.0083 (7) |
| C4' | 0.0240 (8) | 0.0314 (9) | 0.0250 (8) | 0.0058 (7) | 0.0052 (7) | 0.0134 (7) |
| C5' | 0.0267 (8) | 0.0231 (8) | 0.0253 (8) | 0.0047 (7) | 0.0024 (7) | 0.0085 (7) |
| C6' | 0.0232 (8) | 0.0258 (8) | 0.0213 (8) | 0.0076 (7) | 0.0042 (6) | 0.0063 (7) |
| C8' | 0.0386 (10) | 0.0241 (9) | 0.0339 (9) | 0.0072 (7) | 0.0044 (8) | 0.0056 (7) |
| O1—C2 | 1.3627 (18) | C8—C9 | 1.393 (2) |
| O1—C9 | 1.3723 (19) | C8—H8A | 0.9500 |
| O1W—H11 | 0.829 (17) | C9—C10 | 1.397 (2) |
| O1W—H12 | 0.826 (19) | C11—H11A | 0.9800 |
| O2—C7 | 1.3564 (19) | C11—H11B | 0.9800 |
| O2—C13 | 1.427 (2) | C11—H11C | 0.9800 |
| O3—C6 | 1.369 (2) | C12—H12A | 0.9800 |
| O3—C12 | 1.422 (2) | C12—H12B | 0.9800 |
| O4—C5 | 1.3732 (19) | C12—H12C | 0.9800 |
| O4—C11 | 1.436 (2) | C13—H13A | 0.9800 |
| O5—C4 | 1.240 (2) | C13—H13B | 0.9800 |
| O6—C3' | 1.374 (2) | C13—H13C | 0.9800 |
| O6—C16 | 1.428 (2) | C16—H16A | 0.9900 |
| O7—C4' | 1.367 (2) | C16—H16B | 0.9900 |
| O7—C16 | 1.438 (2) | C1'—C6' | 1.398 (2) |
| O8—C5' | 1.356 (2) | C1'—C2' | 1.411 (2) |
| O8—C8' | 1.426 (2) | C2'—C3' | 1.365 (2) |
| C2—C3 | 1.347 (2) | C2'—H2'A | 0.9500 |
| C2—C1' | 1.470 (2) | C3'—C4' | 1.376 (2) |
| C3—C4 | 1.436 (2) | C4'—C5' | 1.383 (2) |
| C3—H3A | 0.9500 | C5'—C6' | 1.400 (2) |
| C4—C10 | 1.465 (2) | C6'—H6'A | 0.9500 |
| C5—C6 | 1.377 (2) | C8'—H8'A | 0.9800 |
| C5—C10 | 1.417 (2) | C8'—H8'B | 0.9800 |
| C6—C7 | 1.412 (2) | C8'—H8'C | 0.9800 |
| C7—C8 | 1.381 (2) | ||
| C2—O1—C9 | 119.79 (12) | O3—C12—H12B | 109.5 |
| H11—O1W—H12 | 103 (3) | H12A—C12—H12B | 109.5 |
| C7—O2—C13 | 117.60 (13) | O3—C12—H12C | 109.5 |
| C6—O3—C12 | 116.78 (13) | H12A—C12—H12C | 109.5 |
| C5—O4—C11 | 112.69 (13) | H12B—C12—H12C | 109.5 |
| C3'—O6—C16 | 106.39 (13) | O2—C13—H13A | 109.5 |
| C4'—O7—C16 | 105.55 (13) | O2—C13—H13B | 109.5 |
| C5'—O8—C8' | 117.93 (13) | H13A—C13—H13B | 109.5 |
| C3—C2—O1 | 121.29 (14) | O2—C13—H13C | 109.5 |
| C3—C2—C1' | 125.84 (14) | H13A—C13—H13C | 109.5 |
| O1—C2—C1' | 112.86 (13) | H13B—C13—H13C | 109.5 |
| C2—C3—C4 | 123.01 (15) | O6—C16—O7 | 107.82 (13) |
| C2—C3—H3A | 118.5 | O6—C16—H16A | 110.1 |
| C4—C3—H3A | 118.5 | O7—C16—H16A | 110.1 |
| O5—C4—C3 | 121.05 (15) | O6—C16—H16B | 110.1 |
| O5—C4—C10 | 124.15 (15) | O7—C16—H16B | 110.1 |
| C3—C4—C10 | 114.80 (14) | H16A—C16—H16B | 108.5 |
| O4—C5—C6 | 118.34 (14) | C6'—C1'—C2' | 120.90 (15) |
| O4—C5—C10 | 120.27 (14) | C6'—C1'—C2 | 119.88 (14) |
| C6—C5—C10 | 121.39 (14) | C2'—C1'—C2 | 119.20 (14) |
| O3—C6—C5 | 122.89 (14) | C3'—C2'—C1' | 116.46 (15) |
| O3—C6—C7 | 117.07 (14) | C3'—C2'—H2'A | 121.8 |
| C5—C6—C7 | 119.88 (15) | C1'—C2'—H2'A | 121.8 |
| O2—C7—C8 | 124.83 (15) | C2'—C3'—O6 | 127.60 (15) |
| O2—C7—C6 | 114.65 (14) | C2'—C3'—C4' | 123.06 (15) |
| C8—C7—C6 | 120.50 (15) | O6—C3'—C4' | 109.34 (14) |
| C7—C8—C9 | 118.29 (15) | O7—C4'—C3' | 110.80 (14) |
| C7—C8—H8A | 120.9 | O7—C4'—C5' | 127.57 (15) |
| C9—C8—H8A | 120.9 | C3'—C4'—C5' | 121.61 (15) |
| O1—C9—C8 | 114.47 (14) | O8—C5'—C4' | 117.04 (15) |
| O1—C9—C10 | 122.08 (14) | O8—C5'—C6' | 126.13 (15) |
| C8—C9—C10 | 123.45 (14) | C4'—C5'—C6' | 116.82 (15) |
| C9—C10—C5 | 116.48 (14) | C1'—C6'—C5' | 121.13 (15) |
| C9—C10—C4 | 118.96 (14) | C1'—C6'—H6'A | 119.4 |
| C5—C10—C4 | 124.54 (14) | C5'—C6'—H6'A | 119.4 |
| O4—C11—H11A | 109.5 | O8—C8'—H8'A | 109.5 |
| O4—C11—H11B | 109.5 | O8—C8'—H8'B | 109.5 |
| H11A—C11—H11B | 109.5 | H8'A—C8'—H8'B | 109.5 |
| O4—C11—H11C | 109.5 | O8—C8'—H8'C | 109.5 |
| H11A—C11—H11C | 109.5 | H8'A—C8'—H8'C | 109.5 |
| H11B—C11—H11C | 109.5 | H8'B—C8'—H8'C | 109.5 |
| O3—C12—H12A | 109.5 | ||
| C9—O1—C2—C3 | −2.1 (2) | C6—C5—C10—C4 | −179.51 (14) |
| C9—O1—C2—C1' | 178.78 (12) | O5—C4—C10—C9 | 178.31 (15) |
| O1—C2—C3—C4 | 0.1 (2) | C3—C4—C10—C9 | −1.8 (2) |
| C1'—C2—C3—C4 | 179.04 (14) | O5—C4—C10—C5 | −3.6 (3) |
| C2—C3—C4—O5 | −178.26 (15) | C3—C4—C10—C5 | 176.28 (14) |
| C2—C3—C4—C10 | 1.8 (2) | C3'—O6—C16—O7 | −3.22 (18) |
| C11—O4—C5—C6 | 93.10 (18) | C4'—O7—C16—O6 | 2.76 (18) |
| C11—O4—C5—C10 | −86.81 (18) | C3—C2—C1'—C6' | −178.88 (15) |
| C12—O3—C6—C5 | 57.9 (2) | O1—C2—C1'—C6' | 0.2 (2) |
| C12—O3—C6—C7 | −126.79 (17) | C3—C2—C1'—C2' | −0.4 (2) |
| O4—C5—C6—O3 | −4.0 (2) | O1—C2—C1'—C2' | 178.63 (13) |
| C10—C5—C6—O3 | 175.91 (14) | C6'—C1'—C2'—C3' | 1.0 (2) |
| O4—C5—C6—C7 | −179.23 (14) | C2—C1'—C2'—C3' | −177.43 (14) |
| C10—C5—C6—C7 | 0.7 (2) | C1'—C2'—C3'—O6 | −178.60 (16) |
| C13—O2—C7—C8 | 4.0 (2) | C1'—C2'—C3'—C4' | 0.0 (2) |
| C13—O2—C7—C6 | −174.70 (15) | C16—O6—C3'—C2' | −178.74 (17) |
| O3—C6—C7—O2 | 3.6 (2) | C16—O6—C3'—C4' | 2.46 (18) |
| C5—C6—C7—O2 | 179.09 (14) | C16—O7—C4'—C3' | −1.28 (19) |
| O3—C6—C7—C8 | −175.18 (14) | C16—O7—C4'—C5' | 179.85 (16) |
| C5—C6—C7—C8 | 0.3 (2) | C2'—C3'—C4'—O7 | −179.62 (15) |
| O2—C7—C8—C9 | −179.16 (14) | O6—C3'—C4'—O7 | −0.7 (2) |
| C6—C7—C8—C9 | −0.5 (2) | C2'—C3'—C4'—C5' | −0.7 (3) |
| C2—O1—C9—C8 | −177.44 (13) | O6—C3'—C4'—C5' | 178.20 (15) |
| C2—O1—C9—C10 | 2.1 (2) | C8'—O8—C5'—C4' | 176.80 (14) |
| C7—C8—C9—O1 | 179.29 (13) | C8'—O8—C5'—C6' | −3.2 (2) |
| C7—C8—C9—C10 | −0.3 (2) | O7—C4'—C5'—O8 | −1.0 (3) |
| O1—C9—C10—C5 | −178.32 (13) | C3'—C4'—C5'—O8 | −179.78 (15) |
| C8—C9—C10—C5 | 1.2 (2) | O7—C4'—C5'—C6' | 178.95 (15) |
| O1—C9—C10—C4 | −0.1 (2) | C3'—C4'—C5'—C6' | 0.2 (2) |
| C8—C9—C10—C4 | 179.43 (14) | C2'—C1'—C6'—C5' | −1.5 (2) |
| O4—C5—C10—C9 | 178.51 (13) | C2—C1'—C6'—C5' | 176.92 (14) |
| C6—C5—C10—C9 | −1.4 (2) | O8—C5'—C6'—C1' | −179.14 (15) |
| O4—C5—C10—C4 | 0.4 (2) | C4'—C5'—C6'—C1' | 0.9 (2) |
| H··· | ||||
| O1 | 0.83 (2) | 2.03 (2) | 2.823 (2) | 160 (3) |
| O1 | 0.83 (2) | 2.33 (3) | 2.987 (2) | 137 (3) |
| C3—H3 | 0.95 | 2.41 | 3.255 (2) | 147 |
| C8—H8 | 0.95 | 2.42 | 3.372 (2) | 175 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.83 (2) | 2.03 (2) | 2.823 (2) | 160 (3) |
| O1 | 0.83 (2) | 2.33 (3) | 2.987 (2) | 137 (3) |
| C3—H3 | 0.95 | 2.41 | 3.255 (2) | 147 |
| C8—H8 | 0.95 | 2.42 | 3.372 (2) | 175 |
Symmetry codes: (i) ; (ii) .