Literature DB >> 22590209

4,4-Difluoro-8-(4-iodo-phen-yl)-1,3,5,7-tetra-methyl-3a-aza-4a-azonia-4-borata-s-indacene.

Yongling Sun1.   

Abstract

In the title compound, C(19)H(18)BF(2)IN(2), which is a boron-dipyrromethene (BODIPY) derivative, the BODIPY mean plane forms dihedral angles of 88.95 (4) and 78.21 (3)° with the F/B/F and 4-iodo-phenyl planes, respectively.

Entities:  

Year:  2012        PMID: 22590209      PMCID: PMC3344447          DOI: 10.1107/S1600536812004072

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related boron–dipyrromethene derivatives, see: Zhou (2010 ▶); Chen & Jiang (2011 ▶); Hinkle et al. (2011 ▶); Cui et al. (2012 ▶).

Experimental

Crystal data

C19H18BF2IN2 M = 450.06 Monoclinic, a = 12.1004 (3) Å b = 8.1992 (2) Å c = 18.0607 (4) Å β = 90.577 (3)° V = 1791.77 (8) Å3 Z = 4 Cu Kα radiation μ = 14.24 mm−1 T = 293 K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.102, T max = 0.110 6829 measured reflections 3348 independent reflections 2770 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.166 S = 1.05 3348 reflections 230 parameters H-atom parameters constrained Δρmax = 1.33 e Å−3 Δρmin = −1.36 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812004072/cv5238sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004072/cv5238Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812004072/cv5238Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H18BF2IN2F(000) = 888
Mr = 450.06Dx = 1.668 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 12.1004 (3) ÅCell parameters from 3440 reflections
b = 8.1992 (2) ŵ = 14.24 mm1
c = 18.0607 (4) ÅT = 293 K
β = 90.577 (3)°Block, red
V = 1791.77 (8) Å30.20 × 0.18 × 0.16 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer3348 independent reflections
Radiation source: fine-focus sealed tube2770 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
phi and ω scansθmax = 70.8°, θmin = 4.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −9→14
Tmin = 0.102, Tmax = 0.110k = −10→8
6829 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.166H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0917P)2 + 0.3111P] where P = (Fo2 + 2Fc2)/3
3348 reflections(Δ/σ)max = 0.001
230 parametersΔρmax = 1.33 e Å3
0 restraintsΔρmin = −1.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.46758 (4)−0.22865 (6)0.54374 (2)0.0515 (2)
F11.0026 (3)0.3904 (5)0.8798 (2)0.0540 (10)
N20.8395 (4)0.2246 (6)0.8934 (3)0.0334 (11)
F20.8499 (4)0.5070 (5)0.9279 (2)0.0569 (11)
N10.8479 (3)0.4411 (6)0.7983 (2)0.0305 (10)
C150.7292 (4)0.0148 (7)0.6658 (3)0.0345 (13)
H60.80560.02330.66190.041*
C20.8031 (5)−0.0117 (8)0.9496 (3)0.0401 (14)
H70.8028−0.09330.98530.048*
C90.7415 (4)0.1937 (7)0.7768 (3)0.0278 (11)
C10.7510 (4)−0.0199 (7)0.8812 (3)0.0332 (12)
C140.6760 (4)0.0933 (7)0.7238 (3)0.0280 (11)
C100.7747 (4)0.1305 (7)0.8456 (3)0.0272 (11)
C80.7754 (4)0.3485 (7)0.7541 (3)0.0273 (11)
C70.7538 (4)0.4399 (7)0.6886 (3)0.0325 (12)
C130.9491 (6)0.7053 (9)0.7908 (4)0.0510 (17)
H15B1.02390.67420.78070.077*
H15C0.93970.71660.84320.077*
H15A0.93310.80740.76690.077*
C60.8157 (5)0.5794 (8)0.6943 (3)0.0390 (13)
H160.81920.66140.65880.047*
C40.9226 (6)0.2003 (10)1.0198 (4)0.0522 (18)
H17C0.89150.30081.03710.078*
H17A0.99720.21871.00430.078*
H17B0.92230.12141.05910.078*
C170.5569 (5)−0.0896 (7)0.6206 (3)0.0357 (13)
C50.8727 (5)0.5783 (8)0.7620 (3)0.0354 (13)
C180.5021 (5)−0.0124 (8)0.6784 (3)0.0370 (13)
H200.4259−0.02180.68260.044*
C160.6705 (5)−0.0756 (8)0.6139 (3)0.0389 (14)
H210.7069−0.12620.57500.047*
C190.5624 (5)0.0783 (8)0.7293 (3)0.0362 (13)
H220.52600.12990.76790.043*
C30.8559 (5)0.1382 (8)0.9563 (3)0.0384 (14)
B0.8873 (5)0.3956 (9)0.8772 (4)0.0346 (14)
C120.6745 (5)0.4019 (9)0.6266 (3)0.0465 (16)
H25A0.69990.30770.60020.070*
H25C0.67030.49330.59350.070*
H25B0.60270.38040.64650.070*
C11A0.6824 (5)−0.1606 (8)0.8552 (4)0.0419 (14)
H1AB0.6056−0.13140.85670.063*
H1AC0.6955−0.25290.88680.063*
H1AA0.7020−0.18780.80530.063*
U11U22U33U12U13U23
I0.0601 (4)0.0609 (4)0.0331 (3)−0.0223 (2)−0.0201 (2)−0.00197 (17)
F10.0302 (17)0.081 (3)0.050 (2)−0.0144 (19)−0.0154 (16)0.009 (2)
N20.031 (2)0.048 (3)0.021 (2)0.001 (2)−0.0043 (19)−0.003 (2)
F20.082 (3)0.057 (2)0.0314 (18)−0.001 (2)−0.0013 (19)−0.0118 (17)
N10.025 (2)0.039 (3)0.027 (2)−0.001 (2)−0.0030 (17)−0.006 (2)
C150.023 (2)0.047 (3)0.034 (3)0.000 (2)−0.006 (2)−0.009 (3)
C20.043 (3)0.048 (4)0.029 (3)0.003 (3)−0.009 (2)0.008 (3)
C90.021 (2)0.037 (3)0.026 (3)0.002 (2)−0.002 (2)−0.006 (2)
C10.028 (3)0.042 (3)0.030 (3)0.004 (3)0.000 (2)−0.001 (2)
C140.027 (2)0.040 (3)0.017 (2)−0.003 (2)−0.0031 (19)0.001 (2)
C100.020 (2)0.035 (3)0.027 (2)0.001 (2)−0.0028 (19)−0.005 (2)
C80.021 (2)0.033 (3)0.028 (2)0.000 (2)−0.0051 (19)−0.007 (2)
C70.029 (3)0.043 (3)0.026 (2)0.002 (3)−0.003 (2)−0.003 (2)
C130.047 (4)0.051 (4)0.055 (5)−0.007 (3)−0.001 (3)−0.005 (3)
C60.046 (3)0.042 (3)0.029 (3)−0.002 (3)0.000 (2)0.001 (2)
C40.053 (4)0.075 (5)0.029 (3)−0.011 (4)−0.016 (3)0.001 (3)
C170.044 (3)0.037 (3)0.026 (3)−0.012 (3)−0.017 (2)−0.002 (2)
C50.034 (3)0.039 (3)0.033 (3)−0.001 (3)−0.002 (2)−0.003 (2)
C180.027 (3)0.048 (4)0.036 (3)−0.009 (3)−0.004 (2)0.004 (3)
C160.034 (3)0.054 (4)0.028 (3)0.001 (3)0.002 (2)−0.008 (3)
C190.035 (3)0.049 (3)0.025 (3)−0.004 (3)−0.004 (2)−0.002 (2)
C30.038 (3)0.055 (4)0.023 (3)−0.001 (3)−0.008 (2)0.002 (3)
B0.028 (3)0.047 (4)0.028 (3)−0.006 (3)−0.002 (2)−0.007 (3)
C120.047 (3)0.061 (4)0.032 (3)−0.007 (3)−0.015 (3)0.012 (3)
C11A0.038 (3)0.044 (4)0.044 (3)0.000 (3)−0.001 (3)0.003 (3)
I—C172.089 (5)C7—C121.500 (7)
F1—B1.397 (7)C13—C51.483 (9)
N2—C31.352 (8)C13—H15B0.9600
N2—C101.393 (7)C13—H15C0.9600
N2—B1.546 (9)C13—H15A0.9600
F2—B1.373 (8)C6—C51.399 (8)
N1—C51.337 (8)C6—H160.9300
N1—C81.403 (6)C4—C31.486 (8)
N1—B1.544 (8)C4—H17C0.9600
C15—C161.387 (8)C4—H17A0.9600
C15—C141.392 (7)C4—H17B0.9600
C15—H60.9300C17—C161.386 (8)
C2—C11.382 (8)C17—C181.394 (8)
C2—C31.390 (9)C18—C191.386 (8)
C2—H70.9300C18—H200.9300
C9—C81.396 (8)C16—H210.9300
C9—C101.402 (7)C19—H220.9300
C9—C141.485 (7)C12—H25A0.9600
C1—C101.422 (8)C12—H25C0.9600
C1—C11A1.494 (8)C12—H25B0.9600
C14—C191.385 (8)C11A—H1AB0.9600
C8—C71.422 (8)C11A—H1AC0.9600
C7—C61.370 (9)C11A—H1AA0.9600
C3—N2—C10107.9 (5)H17C—C4—H17A109.5
C3—N2—B125.6 (5)C3—C4—H17B109.5
C10—N2—B126.4 (5)H17C—C4—H17B109.5
C5—N1—C8108.6 (4)H17A—C4—H17B109.5
C5—N1—B125.9 (5)C16—C17—C18120.5 (5)
C8—N1—B125.4 (5)C16—C17—I119.6 (4)
C16—C15—C14121.2 (5)C18—C17—I119.9 (4)
C16—C15—H6119.4N1—C5—C6108.8 (5)
C14—C15—H6119.4N1—C5—C13124.2 (5)
C1—C2—C3109.1 (5)C6—C5—C13127.0 (6)
C1—C2—H7125.5C19—C18—C17119.4 (5)
C3—C2—H7125.5C19—C18—H20120.3
C8—C9—C10120.9 (5)C17—C18—H20120.3
C8—C9—C14118.1 (5)C17—C16—C15119.2 (5)
C10—C9—C14120.8 (5)C17—C16—H21120.4
C2—C1—C10105.7 (5)C15—C16—H21120.4
C2—C1—C11A124.5 (6)C14—C19—C18121.0 (5)
C10—C1—C11A129.9 (5)C14—C19—H22119.5
C19—C14—C15118.7 (5)C18—C19—H22119.5
C19—C14—C9121.7 (5)N2—C3—C2109.0 (5)
C15—C14—C9119.6 (4)N2—C3—C4122.9 (6)
N2—C10—C9120.0 (5)C2—C3—C4128.0 (6)
N2—C10—C1108.3 (5)F2—B—F1109.5 (5)
C9—C10—C1131.7 (5)F2—B—N1110.8 (5)
C9—C8—N1120.6 (5)F1—B—N1109.7 (5)
C9—C8—C7132.1 (5)F2—B—N2110.6 (5)
N1—C8—C7107.2 (5)F1—B—N2109.9 (5)
C6—C7—C8106.4 (5)N1—B—N2106.4 (5)
C6—C7—C12125.0 (6)C7—C12—H25A109.5
C8—C7—C12128.5 (5)C7—C12—H25C109.5
C5—C13—H15B109.5H25A—C12—H25C109.5
C5—C13—H15C109.5C7—C12—H25B109.5
H15B—C13—H15C109.5H25A—C12—H25B109.5
C5—C13—H15A109.5H25C—C12—H25B109.5
H15B—C13—H15A109.5C1—C11A—H1AB109.5
H15C—C13—H15A109.5C1—C11A—H1AC109.5
C7—C6—C5108.9 (5)H1AB—C11A—H1AC109.5
C7—C6—H16125.5C1—C11A—H1AA109.5
C5—C6—H16125.5H1AB—C11A—H1AA109.5
C3—C4—H17C109.5H1AC—C11A—H1AA109.5
C3—C4—H17A109.5
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4,4-Difluoro-1,3,5,7-tetra-methyl-8-penta-fluoro-phenyl-4-bora-3a,4a-diaza-s-indacene.

Authors:  Xiaofeng Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

3.  4-(4,4-Difluoro-1,3,5,7-tetra-methyl-3a-aza-4a-azonia-4-borata-s-indacen-8-yl)benzonitrile.

Authors:  Yuting Chen; Jianzhuang Jiang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

4.  (S)-(-)-1-Phenyl-ethanaminium 4-(4,4-di-fluoro-1,3,5,7-tetra-methyl-3a,4a-diaza-4-borata-s-indacen-8-yl)benzoate.

Authors:  Lindsay M Hinkle; Raghu Chitta; Kent R Mann
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-06

5.  {2-[(3,5-Dimethyl-2H-pyrrol-2-yl-idene-κN)(4-nitro-phen-yl)meth-yl]-3,5-dimethyl-1H-pyrrol-1-ido-κN}difluoridoboron.

Authors:  Ai-Jun Cui; Jie An; Fu-An Sun; Meng Hu; Jing Qin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-10
  5 in total

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