Literature DB >> 21580602

4,4-Difluoro-1,3,5,7-tetra-methyl-8-penta-fluoro-phenyl-4-bora-3a,4a-diaza-s-indacene.

Xiaofeng Zhou1.   

Abstract

In the title dye compound, C(19)H(14)BF(7)N(2), the boron-dipyrromethene core lies on a crystallographic mirror plane which bis-ects the BF(2) and penta-fluoro-phenyl groups. The dihedral angle between the penta-fluoro-phenyl ring and the tricyclic system is thus 90° by symmetry. The sp(3)-hybridized B atom has a slightly distorted tetra-hedral coordination.

Entities:  

Year:  2010        PMID: 21580602      PMCID: PMC2983759          DOI: 10.1107/S1600536810003703

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For boron–dipyrromethene (BODIPY) dyes, see: Bergström et al. (2002 ▶); Trieflinger et al. (2005 ▶). For geometrical parameters in other BODIPY-based compounds, see: Picou et al.(1990 ▶); Wang et al.(2007 ▶); Kuhn et al. (1990 ▶).

Experimental

Crystal data

C19H14BF7N2 M = 414.13 Monoclinic, a = 12.4060 (5) Å b = 7.5490 (9) Å c = 19.720 (3) Å β = 97.12 (2)° V = 1832.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.2 × 0.2 × 0.2 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.973, T max = 0.979 8232 measured reflections 1936 independent reflections 1585 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.162 S = 1.06 1936 reflections 170 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810003703/bh2269sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003703/bh2269Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H14BF7N2F(000) = 840
Mr = 414.13Dx = 1.501 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yCell parameters from 2191 reflections
a = 12.4060 (5) Åθ = 3.1–27.5°
b = 7.5490 (9) ŵ = 0.14 mm1
c = 19.720 (3) ÅT = 293 K
β = 97.12 (2)°Prism, red
V = 1832.6 (4) Å30.2 × 0.2 × 0.2 mm
Z = 4
Rigaku SCXmini diffractometer1936 independent reflections
Radiation source: fine-focus sealed tube1585 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 13.6612 pixels mm-1θmax = 26.0°, θmin = 3.1°
ω scansh = −15→15
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −9→9
Tmin = 0.973, Tmax = 0.979l = −24→24
8232 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.091P)2 + 0.8854P] where P = (Fo2 + 2Fc2)/3
1936 reflections(Δ/σ)max < 0.001
170 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.23 e Å3
0 constraints
xyzUiso*/Ueq
F10.12945 (15)0.3502 (3)0.07469 (8)0.1040 (7)
F30.28302 (13)0.18847 (16)0.34101 (7)0.0721 (5)
F40.35839 (14)0.1888 (2)0.47541 (8)0.0928 (6)
F50.39356 (18)0.50000.54333 (9)0.0988 (9)
N10.08602 (19)0.50000.17499 (11)0.0486 (6)
N20.2747 (2)0.50000.14360 (11)0.0523 (6)
C1−0.0234 (2)0.50000.17144 (15)0.0564 (7)
C2−0.0523 (2)0.50000.23784 (16)0.0597 (8)
H2A−0.12290.50000.24900.104 (14)*
C30.0406 (2)0.50000.28399 (14)0.0489 (7)
C40.1291 (2)0.50000.24405 (12)0.0446 (6)
C50.2418 (2)0.50000.26194 (12)0.0422 (6)
C60.3151 (2)0.50000.21363 (13)0.0475 (6)
C70.4316 (2)0.50000.21939 (16)0.0563 (7)
C80.4565 (3)0.50000.15330 (17)0.0682 (9)
H8A0.52630.50000.14080.080 (11)*
C90.3606 (3)0.50000.10769 (15)0.0627 (8)
C10−0.0981 (3)0.50000.10532 (18)0.0783 (11)
H10A−0.05590.50000.06770.16 (2)*
H10B−0.14300.60380.10310.23 (3)*
C110.0428 (3)0.50000.36050 (15)0.0629 (9)
H11A−0.03020.50000.37190.079 (11)*
H11B0.08010.60380.37920.093 (9)*
C120.3492 (4)0.50000.03121 (18)0.0875 (13)
H12A0.27350.50000.01350.25 (4)*
H12B0.38330.39620.01560.172 (19)*
C130.5127 (3)0.50000.28225 (19)0.0693 (9)
H13A0.58470.50000.26930.126 (17)*
H13B0.50270.39620.30890.129 (13)*
C140.2846 (2)0.50000.33641 (13)0.0425 (6)
C150.30342 (16)0.3443 (3)0.37278 (10)0.0490 (5)
C160.34105 (17)0.3429 (3)0.44160 (11)0.0602 (6)
C170.3592 (2)0.50000.47584 (15)0.0638 (9)
B10.1532 (3)0.50000.11399 (17)0.0612 (9)
U11U22U33U12U13U23
F10.0923 (11)0.1505 (17)0.0710 (10)−0.0214 (11)0.0177 (8)−0.0597 (10)
F30.0976 (11)0.0457 (7)0.0730 (9)0.0076 (7)0.0110 (7)0.0018 (6)
F40.1028 (12)0.1033 (12)0.0732 (10)0.0309 (10)0.0147 (8)0.0448 (9)
F50.0785 (14)0.177 (3)0.0379 (10)0.000−0.0059 (9)0.000
N10.0560 (13)0.0546 (13)0.0346 (11)0.0000.0027 (9)0.000
N20.0601 (14)0.0615 (14)0.0377 (12)0.0000.0155 (10)0.000
C10.0547 (17)0.0633 (18)0.0491 (16)0.000−0.0017 (12)0.000
C20.0491 (16)0.079 (2)0.0516 (16)0.0000.0085 (13)0.000
C30.0495 (15)0.0576 (16)0.0405 (14)0.0000.0086 (11)0.000
C40.0520 (15)0.0477 (14)0.0337 (12)0.0000.0041 (10)0.000
C50.0507 (14)0.0386 (13)0.0380 (13)0.0000.0081 (11)0.000
C60.0535 (15)0.0490 (15)0.0408 (14)0.0000.0089 (11)0.000
C70.0541 (16)0.0601 (17)0.0570 (17)0.0000.0157 (13)0.000
C80.0590 (19)0.087 (2)0.064 (2)0.0000.0271 (16)0.000
C90.075 (2)0.071 (2)0.0468 (16)0.0000.0246 (15)0.000
C100.069 (2)0.108 (3)0.0514 (19)0.000−0.0157 (16)0.000
C110.0517 (16)0.095 (3)0.0437 (15)0.0000.0130 (13)0.000
C120.099 (3)0.121 (4)0.0486 (19)0.0000.033 (2)0.000
C130.0507 (17)0.088 (3)0.069 (2)0.0000.0068 (15)0.000
C140.0428 (13)0.0479 (14)0.0375 (13)0.0000.0077 (10)0.000
C150.0507 (10)0.0498 (11)0.0474 (10)0.0060 (9)0.0099 (8)0.0030 (8)
C160.0533 (11)0.0795 (16)0.0488 (11)0.0128 (11)0.0104 (9)0.0208 (11)
C170.0490 (16)0.104 (3)0.0380 (14)0.0000.0051 (12)0.000
B10.068 (2)0.082 (2)0.0346 (15)0.0000.0083 (14)0.000
B1—F11.382 (3)C7—C81.376 (4)
B1—N11.546 (4)C7—C131.497 (5)
B1—N21.548 (5)C8—C91.400 (5)
F3—C151.342 (3)C8—H8A0.9301
F4—C161.345 (3)C9—C121.497 (4)
F5—C171.346 (3)C10—H10A0.9598
N1—C11.350 (4)C10—H10B0.9600
N1—C41.400 (3)C11—H11A0.9601
N2—C91.350 (4)C11—H11B0.9600
N2—C61.409 (4)C12—H12A0.9600
C1—C21.400 (4)C12—H12B0.9601
C1—C101.503 (4)C13—H13A0.9600
C2—C31.377 (4)C13—H13B0.9600
C2—H2A0.9298C14—C151.382 (2)
C3—C41.428 (4)C14—C15i1.382 (2)
C3—C111.506 (4)C15—C161.379 (3)
C4—C51.398 (4)C16—C171.370 (3)
C5—C61.397 (4)C17—C16i1.370 (3)
C5—C141.498 (3)B1—F1i1.382 (3)
C6—C71.435 (4)
C1—N1—C4108.1 (2)C8—C9—C12127.9 (3)
C1—N1—B1126.5 (2)C1—C10—H10A109.6
C4—N1—B1125.4 (2)C1—C10—H10B109.4
C9—N2—C6107.8 (3)H10A—C10—H10B109.5
C9—N2—B1126.6 (3)C3—C11—H11A109.5
C6—N2—B1125.5 (2)C3—C11—H11B109.5
N1—C1—C2108.9 (3)H11A—C11—H11B109.5
N1—C1—C10123.6 (3)C9—C12—H12A109.5
C2—C1—C10127.6 (3)C9—C12—H12B109.5
C3—C2—C1109.2 (3)H12A—C12—H12B109.5
C3—C2—H2A125.5C7—C13—H13A109.4
C1—C2—H2A125.4C7—C13—H13B109.5
C2—C3—C4105.8 (2)H13A—C13—H13B109.5
C2—C3—C11124.9 (3)C15—C14—C15i116.6 (2)
C4—C3—C11129.2 (3)C15—C14—C5121.69 (13)
N1—C4—C5119.6 (2)C15i—C14—C5121.69 (13)
N1—C4—C3108.0 (2)F3—C15—C14119.56 (18)
C5—C4—C3132.3 (2)F3—C15—C16118.27 (19)
C6—C5—C4122.9 (2)C14—C15—C16122.2 (2)
C6—C5—C14119.1 (2)F4—C16—C17119.9 (2)
C4—C5—C14118.0 (2)F4—C16—C15120.6 (2)
C5—C6—N2119.1 (2)C17—C16—C15119.5 (2)
C5—C6—C7132.9 (3)F5—C17—C16119.99 (14)
N2—C6—C7108.0 (2)F5—C17—C16i119.99 (14)
C8—C7—C6105.5 (3)C16—C17—C16i120.0 (3)
C8—C7—C13125.3 (3)F1—B1—F1i109.8 (3)
C6—C7—C13129.2 (3)N1—B1—N2107.5 (2)
C7—C8—C9109.6 (3)F1—B1—N1109.8 (2)
C7—C8—H8A125.2F1i—B1—N1109.8 (2)
C9—C8—H8A125.1F1—B1—N2110.0 (2)
N2—C9—C8109.0 (3)F1i—B1—N2110.0 (2)
N2—C9—C12123.1 (3)
  3 in total

1.  "Turn ON/OFF your LOV light": boron-dipyrromethene-flavin dyads as biomimetic switches derived from the LOV domain.

Authors:  Christian Trieflinger; Knut Rurack; Jörg Daub
Journal:  Angew Chem Int Ed Engl       Date:  2005-04-08       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Dimers of dipyrrometheneboron difluoride (BODIPY) with light spectroscopic applications in chemistry and biology.

Authors:  Fredrik Bergström; Ilya Mikhalyov; Peter Hägglöf; Rüdiger Wortmann; Tor Ny; Lennart B A Johansson
Journal:  J Am Chem Soc       Date:  2002-01-16       Impact factor: 15.419

  3 in total
  1 in total

1.  4,4-Difluoro-8-(4-iodo-phen-yl)-1,3,5,7-tetra-methyl-3a-aza-4a-azonia-4-borata-s-indacene.

Authors:  Yongling Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-04
  1 in total

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