Literature DB >> 22590201

1,3-Dimethyl-1H-indazol-6-amine.

Xiao-Kai Zhang, Bing-Ni Liu, Mo Liu, Deng-Ke Liu, Ping-Bao Wang.   

Abstract

The mol-ecular skeleton of the title compound, C(9)H(11)N(3), is almost planar, with a maximum deviation of 0.0325 (19) Å for the amino N atom. In the crystal, N-H⋯N hydrogen bonds establish the packing.

Entities:  

Year:  2012        PMID: 22590201      PMCID: PMC3344439          DOI: 10.1107/S1600536812013694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Sorbera et al. (2006 ▶); Zhao et al. (2011 ▶). For related structures, see: Qi et al.(2010 ▶); Long et al. (2011 ▶). For the application of indazole derivatives in the synthesis of drugs, see: Collot et al. (1999 ▶).

Experimental

Crystal data

C9H11N3 M = 161.21 Orthorhombic, a = 18.3004 (10) Å b = 8.3399 (7) Å c = 5.6563 (1) Å V = 863.28 (9) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.22 × 0.18 × 0.12 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005 ▶) T min = 0.983, T max = 0.991 7967 measured reflections 2002 independent reflections 1588 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.149 S = 1.02 2002 reflections 118 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812013694/kp2401sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013694/kp2401Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812013694/kp2401Isup3.cdx Supplementary material file. DOI: 10.1107/S1600536812013694/kp2401Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H11N3F(000) = 344
Mr = 161.21Dx = 1.240 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2241 reflections
a = 18.3004 (10) Åθ = 3.3–27.9°
b = 8.3399 (7) ŵ = 0.08 mm1
c = 5.6563 (1) ÅT = 293 K
V = 863.28 (9) Å3Prism, yellow
Z = 40.22 × 0.18 × 0.12 mm
Rigaku Saturn diffractometer2002 independent reflections
Radiation source: rotating anode1588 reflections with I > 2σ(I)
Confocal monochromatorRint = 0.045
ω scansθmax = 27.8°, θmin = 2.7°
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005)h = −23→24
Tmin = 0.983, Tmax = 0.991k = −9→10
7967 measured reflectionsl = −7→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.149w = 1/[σ2(Fo2) + (0.0907P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.002
2002 reflectionsΔρmax = 0.16 e Å3
118 parametersΔρmin = −0.14 e Å3
4 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.12 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.10351 (9)0.83358 (18)0.4784 (4)0.0568 (5)
N20.14711 (8)0.72497 (19)0.5968 (4)0.0538 (5)
N30.19922 (10)0.1548 (2)0.4581 (5)0.0699 (6)
H3A0.1689 (11)0.071 (2)0.449 (5)0.084*
H3B0.2287 (12)0.150 (3)0.587 (3)0.084*
C10.01866 (14)0.8321 (3)0.1420 (6)0.0785 (8)
H1A−0.02930.78900.16800.118*
H1B0.03300.8131−0.01880.118*
H1C0.01820.94540.17210.118*
C20.07147 (10)0.7530 (3)0.3043 (5)0.0549 (5)
C30.09469 (10)0.5900 (2)0.3044 (4)0.0493 (5)
C40.08096 (11)0.4531 (3)0.1658 (5)0.0596 (6)
H40.04890.45790.03840.072*
C50.11558 (12)0.3130 (3)0.2223 (5)0.0615 (6)
H50.10720.22280.12950.074*
C60.16353 (10)0.3008 (2)0.4163 (5)0.0559 (6)
C70.17824 (11)0.4336 (2)0.5559 (4)0.0529 (5)
H70.21020.42770.68360.063*
C80.14298 (9)0.5768 (2)0.4964 (4)0.0472 (5)
C90.19061 (12)0.7763 (3)0.7940 (5)0.0624 (6)
H9A0.19360.69130.90810.094*
H9B0.16850.86880.86550.094*
H9C0.23880.80320.74020.094*
U11U22U33U12U13U23
N10.0555 (9)0.0501 (9)0.0648 (12)0.0046 (6)−0.0046 (8)−0.0011 (9)
N20.0544 (8)0.0497 (9)0.0573 (10)0.0024 (7)−0.0077 (8)−0.0037 (8)
N30.0716 (13)0.0426 (9)0.0956 (17)−0.0012 (7)−0.0004 (12)0.0028 (11)
C10.0711 (14)0.0782 (15)0.0862 (19)0.0149 (11)−0.0214 (14)0.0054 (14)
C20.0474 (9)0.0563 (11)0.0610 (12)0.0026 (8)−0.0019 (9)0.0031 (10)
C30.0462 (9)0.0521 (11)0.0496 (11)−0.0036 (7)−0.0001 (8)0.0017 (9)
C40.0581 (11)0.0599 (12)0.0608 (13)−0.0082 (9)−0.0086 (10)−0.0051 (11)
C50.0655 (12)0.0509 (11)0.0682 (15)−0.0097 (9)−0.0008 (11)−0.0082 (10)
C60.0517 (10)0.0463 (10)0.0696 (15)−0.0031 (8)0.0064 (10)0.0027 (10)
C70.0509 (9)0.0495 (11)0.0581 (12)−0.0016 (7)0.0008 (9)0.0074 (9)
C80.0429 (8)0.0461 (10)0.0526 (11)−0.0025 (6)0.0018 (8)0.0037 (9)
C90.0663 (13)0.0651 (13)0.0556 (13)−0.0020 (10)−0.0097 (10)−0.0054 (11)
N1—C21.329 (3)C3—C81.404 (3)
N1—N21.380 (2)C3—C41.407 (3)
N2—C81.362 (2)C4—C51.367 (3)
N2—C91.436 (3)C4—H40.9300
N3—C61.401 (3)C5—C61.409 (3)
N3—H3A0.893 (9)C5—H50.9300
N3—H3B0.909 (10)C6—C71.387 (3)
C1—C21.487 (3)C7—C81.399 (3)
C1—H1A0.9600C7—H70.9300
C1—H1B0.9600C9—H9A0.9600
C1—H1C0.9600C9—H9B0.9600
C2—C31.424 (3)C9—H9C0.9600
C2—N1—N2106.43 (17)C5—C4—H4120.6
C8—N2—N1111.14 (17)C3—C4—H4120.6
C8—N2—C9128.72 (17)C4—C5—C6122.2 (2)
N1—N2—C9120.11 (17)C4—C5—H5118.9
C6—N3—H3A112.3 (15)C6—C5—H5118.9
C6—N3—H3B116.7 (15)C7—C6—N3120.5 (2)
H3A—N3—H3B112.6 (15)C7—C6—C5120.41 (19)
C2—C1—H1A109.5N3—C6—C5119.0 (2)
C2—C1—H1B109.5C6—C7—C8117.1 (2)
H1A—C1—H1B109.5C6—C7—H7121.4
C2—C1—H1C109.5C8—C7—H7121.4
H1A—C1—H1C109.5N2—C8—C7130.43 (19)
H1B—C1—H1C109.5N2—C8—C3106.65 (16)
N1—C2—C3110.53 (19)C7—C8—C3122.91 (18)
N1—C2—C1121.3 (2)N2—C9—H9A109.5
C3—C2—C1128.1 (2)N2—C9—H9B109.5
C8—C3—C4118.65 (18)H9A—C9—H9B109.5
C8—C3—C2105.24 (18)N2—C9—H9C109.5
C4—C3—C2136.1 (2)H9A—C9—H9C109.5
C5—C4—C3118.7 (2)H9B—C9—H9C109.5
C2—N1—N2—C80.5 (2)N3—C6—C7—C8177.1 (2)
C2—N1—N2—C9178.8 (2)C5—C6—C7—C80.7 (3)
N2—N1—C2—C3−0.9 (2)N1—N2—C8—C7179.1 (2)
N2—N1—C2—C1178.5 (2)C9—N2—C8—C71.0 (3)
N1—C2—C3—C80.9 (2)N1—N2—C8—C30.1 (2)
C1—C2—C3—C8−178.4 (2)C9—N2—C8—C3−178.0 (2)
N1—C2—C3—C4−178.9 (2)C6—C7—C8—N2−179.1 (2)
C1—C2—C3—C41.8 (4)C6—C7—C8—C3−0.2 (3)
C8—C3—C4—C5−0.5 (3)C4—C3—C8—N2179.25 (18)
C2—C3—C4—C5179.2 (2)C2—C3—C8—N2−0.6 (2)
C3—C4—C5—C61.0 (4)C4—C3—C8—C70.2 (3)
C4—C5—C6—C7−1.1 (3)C2—C3—C8—C7−179.67 (19)
C4—C5—C6—N3−177.6 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N1i0.89 (1)2.32 (1)3.203 (2)169 (2)
N3—H3B···N3ii0.91 (1)2.48 (1)3.384 (2)175 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N1i0.89 (1)2.32 (1)3.203 (2)169 (2)
N3—H3B⋯N3ii0.91 (1)2.48 (1)3.384 (2)175 (2)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(2-Chloro-pyrimidin-4-yl)-N,2-di-methyl-2H-indazol-6-amine.

Authors:  Hao-Fei Qi; Bing-Ni Liu; Mo Liu; Deng-Ke Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30

3.  2-Methyl-6-nitro-2H-indazole.

Authors:  Li Long; Bing-Ni Liu; Mo Liu; Deng-Ke Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28
  3 in total

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