Literature DB >> 22590177

Poly[[μ-(1-ammonio-ethane-1,1-di-yl)bis-(hydrogenphospho-nato)]diaquachloridodisodium]: a powder X-ray diffraction study.

Mwaffak Rukiah1, Thaer Assaad.   

Abstract

The title compounpan>d, [n class="Chemical">Na(2)(C(2)H(8)NO(6)P(2))Cl(H(2)O)(2)](n), has a polymeric two-dimensional structure extending parallel to (001). The asymmetric unit contains two Na(+) cations located on a centre of symmetry and on a mirror plane, respectively, one half of a bis-phospho-nate anion (the entire anion is completed by mirror symmetry), one chloride anion on a mirror plane and one water mol-ecule in general positions. The two Na(+) cations exhibit distorted octa-hedral NaCl(2)O(4) coordination polyhedra, each consisting of two deprotonated O atoms of the bis-phospho-nate anion, of two water mol-ecules and of two chloride anions. Strong O-H⋯O hydrogen bonds between the -OH group and one of the free O atoms of the bis-phospho-nate anion connect adjacent layers along [100], supported by N-H⋯Cl inter-actions. Intra-layer O-H⋯O and N-H⋯O hydrogen bonds are also observed.

Entities:  

Year:  2012        PMID: 22590177      PMCID: PMC3344415          DOI: 10.1107/S1600536812018077

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general ban class="Chemical">ckgrounpan>d to the use of organin class="Chemical">c diphospho­nic acids as chelating agents in metal extraction and as drugs to prevent calcification and to inhibit bone resorption, see: Matczak-Jon & Videnova-Adrabinska (2005 ▶); Tromelin et al. (1986 ▶); Szabo et al. (2002 ▶). For related structures, see: Bon et al. (2008 ▶); Maltezou et al. (2010 ▶). For standard bond lengths, see: Allen et al. (1987 ▶). For background and details of methods applied in data collection and Rietveld refinement, see: Thompson et al. (1987 ▶); Finger et al. (1994 ▶); Stephens (1999 ▶); Von Dreele (1997 ▶); Boultif & Louër (2004 ▶); Rodriguez-Carvajal (2001 ▶); Roisnel & Rodriguez-Carvajal (2001 ▶); Toby (2001 ▶). For the Le Bail method, see: Le Bail et al. (1988 ▶).

Experimental

Crystal data

[n class="Chemical">Na2(C2H8NO6P2)Cl(H2O)2] M = 321.50 Monon class="Chemical">clinin class="Chemical">c, a = 5.53806 (4) Å b = 10.50365 (8) Å n class="Chemical">c = 10.2096 (1) Å β = 104.0764 (7)° V = 576.06 (1) Å3 Z = 2 n class="Chemical">Cu Kα1 radiationpan> λ = 1.5406 Å μ = 6.62 mm−1 T = 298 K Flat sheet, 8 × 8 mm

Data collection

STOE Transmission STADI P diffran class="Chemical">ctometer Spen class="Chemical">cimen mounting: powder loaded between two Mylar foils Data n class="Chemical">collen class="Chemical">ction mode: transmission Sn class="Chemical">canpan> method: step Absorption correction: for a cylinder mounted on the ϕ axis Absorption/surface roughness correction: function number 4 in GSAS (Larson & Von Dreele, 2004 ▶). Flat plate transmission absorption correction, terms = 0.51550 0.0000, correction is not refined. T min = 0.318, T max = 0.451 2θmin = 7.00°, 2θmax = 91.98°, 2θstep = 0.02°

Refinement

R p = 0.029 R wp = 0.038 R exp = 0.029 R(F 2) = 0.0257 χ2 = 1.769 4250 data points 109 parameters 10 restraints n class="Disease">H atoms treated by a mixture of independent and n class="Chemical">constrained refinement Data n class="Chemical">collection: WinXPOW (Stoe & Cie, 1999 ▶); cell refinement: GSAS (Larson & Von Dreele, 2004 ▶); data reduction: WinXPOW; program(s) used to solve structure: EXPO2009 (Altomare et al., 2009 ▶); program(s) used to refine structure: GSAS; molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). n class="Chemical">Crystal strun class="Chemical">cture: contains datablock(s) global, I. DOI: 10.1107/S1600536812018077/wm2620sup1.cif Rietveld powder data: n class="Chemical">contains datablon class="Chemical">ck(s) I. DOI: 10.1107/S1600536812018077/wm2620Isup2.rtv Additional supplementary materials: n class="Chemical">crystallographin class="Chemical">c information; 3D view; checkCIF report
[Na2(C2H8NO6P2)Cl(H2O)2]Dx = 1.854 Mg m3
Mr = 321.50Melting point: 623 K
Monoclinic, P21/mCu Kα1 radiation, λ = 1.5406 Å
Hall symbol: -P 2ybµ = 6.62 mm1
a = 5.53806 (4) ÅT = 298 K
b = 10.50365 (8) ÅParticle morphology: Fine powder
c = 10.2096 (1) Åwhite
β = 104.0764 (7)°flat sheet, 8 × 8 mm
V = 576.06 (1) Å3Specimen preparation: Prepared at 298 K and 101.3 kPa
Z = 2
STOE Transmission STADI P diffractometerScan method: step
Radiation source: sealed X-ray tubeAbsorption correction: for a cylinder mounted on the φ axis Absorption/surface roughness correction: function number 4 in GSAS (Larson & Von Dreele, 2004). Flat plate transmission absorption correction, terms = 0.51550 0.0000, correction is not refined.
Curved Ge(111) monochromatorTmin = 0.318, Tmax = 0.451
Specimen mounting: powder loaded between two Mylar foilsmin = 7.00°, 2θmax = 91.98°, 2θstep = 0.02°
Data collection mode: transmission
Least-squares matrix: fullProfile function: CW Profile function number 4 with 21 terms Pseudovoigt profile coefficients as parameterized in Thompson et al. (1987) Asymmetry correction of Finger et al. (1994). Microstrain broadening by Stephens (1999). #1(GU) = 0.000 #2(GV) = 0.000 #3(GW) = 11.529 #4(GP) = 0.000 #5(LX) = 0.000 #6(ptec) = 2.91 #7(trns) = 0.00 #8(shft) = -1.5788 #9(sfec) = 0.00 #10(S/L) = 0.0215 #11(H/L) = 0.0215 #12(eta) = 0.6000 #13(S400 ) = 2.1E-01 #14(S040 ) = 2.3E-02 #15(S004 ) = 1.2E-02 #16(S220 ) = 4.2E-02 #17(S202 ) = 4.6E-02 #18(S022 ) = 1.7E-03 #19(S301 ) = 8.7E-02 #20(S103 ) = -3.8E-05 #21(S121 ) = 2.8E-03 Peak tails are ignored where the intensity is below 0.0010 times the peak Aniso. broadening axis 0.0 0.0 1.0
Rp = 0.029109 parameters
Rwp = 0.03810 restraints
Rexp = 0.0290 constraints
R(F2) = 0.0257H atoms treated by a mixture of independent and constrained refinement
χ2 = 1.769(Δ/σ)max = 0.08
4250 data pointsBackground function: GSAS Background function number 1 with 20 terms. Shifted Chebyshev function of 1st kind 1: 914.240 2: -1034.48 3: 577.328 4: -206.578 5: 31.4580 6: 15.1650 7: -17.0889 8: 0.311333 9: 15.3490 10: -12.5113 11: 3.19417 12: 9.78413 13: -11.5493 14: 7.63897 15: -0.448352 16: -4.70971 17: 6.05628 18: -4.89696 19: 6.60474 20: -2.48023
Excluded region(s): nonePreferred orientation correction: March-Dollase AXIS 1 Ratio= 1.12753 h= 0.000 k= 0.000 l= 1.000 Prefered orientation correction range: Min= 0.69761, Max= 1.19727
Experimental. All chemical reagents and solvents were of commercial quality and used as received. NMR spectra were recorded on a Bruker Bio spin 400 spectrometer (400 MHz for 1H, 100 MHz for 13C, 162 MHz for 31P). Chemical shifts (δ) were expressed in p.p.m. relative to TMS as an internal standard. IR spectra were recorded on FTIR-JASCO 300E. Melting points were determined using a Stuart SMP3 melting point apparatus. The powder sample of compound (I) was slightly ground in a mortar, loaded into two foils of Mylar and fixed in the sample holder with a mask of suitable internal diameter (8.0 mm). X-ray powder diffraction patterns were obtained on a Stoe Stadi-P diffractometer with monochromatic Cu Kα1 radiation (λ = 1.5406 Å) selected using an incident-beam curved-crystal germanium Ge(111) monochromator, using the Stoe transmission geometry (horizontal set-up) with a linear position-sensitive detector (PSD). The pattern was scanned over the angular range 7–92° (2θ)The sample was ground lightly in a mortar, loaded between two Mylar foils and fixed in the sample holder with a mask of 8.0 mm internal diameter.
xyzUiso*/Ueq
P10.1295 (3)0.10112 (14)0.1805 (2)0.01656
Cl10.6926 (3)0.250.5220 (2)0.02613
Na10.50.00.50.03054
Na20.1724 (5)0.250.5042 (3)0.02699
O10.1724 (6)0.0974 (3)0.3308 (4)0.0137 (11)*
O2−0.1356 (6)0.0911 (3)0.0983 (4)0.0137 (11)*
O30.2987 (8)−0.0041 (4)0.1397 (4)0.0164 (11)*
O1w0.2545 (8)0.0669 (4)0.6478 (5)0.0326 (13)*
N10.5321 (15)0.250.1977 (9)0.022 (2)*
C10.2590 (13)0.250.1280 (8)0.009 (3)*
C20.2359 (11)0.25−0.0250 (6)0.007 (2)*
H1c20.0613 (15)0.25−0.0726 (10)0.009 (3)*
H2c20.315 (2)0.1743 (6)−0.0494 (10)0.009 (3)*
H1n10.608 (7)0.185 (3)0.173 (5)0.033 (3)*
H2n10.576 (11)0.250.2855 (10)0.033 (3)*
H30.252 (8)−0.040 (3)0.0666 (19)0.0246 (17)*
H1w0.132 (5)0.021 (4)0.639 (5)0.0488 (19)*
H2w0.337 (7)0.077 (4)0.7255 (17)0.0488 (19)*
U11U22U33U12U13U23
P10.0136 (12)0.0168 (12)0.0188 (16)−0.0016 (11)0.0031 (12)−0.0026 (13)
Cl10.0162 (17)0.0362 (17)0.024 (2)0.00.0015 (16)0.0
Na10.037 (3)0.031 (3)0.031 (3)0.008 (2)0.022 (3)0.007 (3)
Na20.027 (2)0.030 (2)0.024 (3)0.00.004 (2)0.0
P1—O11.495 (4)N1—H2n10.870 (14)
P1—O21.507 (4)Na1—Cl12.8226 (7)
P1—O31.570 (4)Na2—Cl1i2.707 (3)
P1—C11.853 (4)Na2—Cl12.842 (3)
C2—C11.537 (9)Na1—O12.408 (3)
C2—H1c20.971 (11)Na1—O1w2.370 (5)
C2—H2c20.969 (9)Na2—O12.389 (4)
N1—C11.507 (10)Na2—O1w2.394 (5)
N1—H1n10.87 (3)
O1—P1—O2117.4 (2)Cl1—Na1—O1w86.43 (10)
O1—P1—O3107.4 (2)Cl1—Na1—O1wiii93.57 (10)
O1—P1—C1110.0 (3)O1—Na2—O1ii84.3 (2)
O2—P1—O3111.5 (2)O1—Na2—O1w83.14 (14)
O2—P1—C1106.9 (3)O1—Na2—O1wii163.5 (2)
O3—P1—C1102.7 (3)O1w—Na2—O1wii106.9 (3)
P1—C1—P1ii115.1 (4)Cl1i—Na2—Cl1172.72 (18)
P1—C1—N1106.1 (4)Cl1i—Na2—O1103.11 (14)
P1—C1—C2110.6 (3)Cl1i—Na2—O1v92.54 (2)
N1—C1—C2107.8 (7)Cl1i—Na2—O1w90.14 (14)
C1—C2—H1c2109.6 (4)Cl1i—Na2—O1wv90.02 (3)
C1—C2—H2c2109.3 (4)Na1—Cl1—Na1vi136.97 (7)
H1c2—C2—H2c2109.3 (5)Na1—Cl1—Na268.74 (4)
H2c2—C2—H2c2ii110.1 (11)Na1—Cl1—Na2vii110.65 (4)
C1—N1—H1n1111 (4)Na2—Cl1—Na2vii172.72 (18)
C1—N1—H2n1119 (4)P1—O1—Na1130.6 (2)
H1n1—N1—H1n1ii103 (5)P1—O1—Na2135.7 (2)
H1n1—N1—H2n1105 (4)Na1—O1—Na283.63 (13)
O1—Na1—O1iii180.0Na1—O1w—Na284.34 (16)
O1—Na1—O1w83.23 (13)Na1—O1w—H1w110 (4)
O1—Na1—O1wiii96.77 (13)Na1—O1w—H2w113 (4)
O1w—Na1—O1wiii180.0Na2—O1w—H1w112 (4)
Cl1—Na1—Cl1iv180.0Na2—O1w—H2w118 (3)
Cl1—Na1—O182.29 (9)H1w—O1w—H2w116 (4)
Cl1—Na1—O1iii97.71 (9)
Na2—Cl1—Na1—O143.53 (11)Cl1—Na1—O1—Na2−50.23 (10)
Na2—Cl1—Na1—O1W−40.11 (13)O1W—Na1—O1—P1−174.5 (3)
Na1—Cl1—Na2—O1−43.99 (9)O1W—Na1—O1—Na237.07 (14)
Na1—Cl1—Na2—O1W39.68 (12)Cl1iv—Na1—O1—P1−81.8 (2)
O2—P1—O1—Na1142.2 (2)O1Wiii—Na1—O1—P15.5 (3)
O2—P1—O1—Na2−85.9 (3)O1Wiii—Na1—O1—Na2−142.93 (14)
O3—P1—O1—Na115.7 (3)Cl1—Na1—O1W—Na245.75 (12)
O3—P1—O1—Na2147.7 (3)O1—Na1—O1W—Na2−36.91 (13)
C1—P1—O1—Na1−95.3 (3)O1iii—Na1—O1W—Na2143.09 (13)
C1—P1—O1—Na236.7 (4)Cl1—Na2—O1—P1−95.6 (3)
O1—P1—C1—N158.6 (5)Cl1—Na2—O1—Na149.77 (8)
O1—P1—C1—C2175.2 (4)O1W—Na2—O1—P1178.0 (3)
O1—P1—C1—P1ii−58.5 (5)O1W—Na2—O1—Na1−36.65 (14)
O2—P1—C1—N1−172.9 (4)Cl1i—Na2—O1—P189.4 (3)
O2—P1—C1—C2−56.3 (5)O1ii—Na2—O1—P1−12.7 (3)
O2—P1—C1—P1ii70.0 (5)O1ii—Na2—O1—Na1132.66 (13)
O3—P1—C1—N1−55.5 (5)Cl1—Na2—O1W—Na1−45.41 (11)
O3—P1—C1—C261.2 (5)O1—Na2—O1W—Na137.27 (14)
O3—P1—C1—P1ii−172.6 (4)O1Wii—Na2—O1W—Na1−129.37 (17)
Cl1—Na1—O1—P198.2 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O2viii0.82 (2)1.74 (2)2.547 (6)170 (4)
O1W—H1W···O1ix0.82 (3)2.18 (4)2.978 (6)166 (5)
O1W—H2W···O3iii0.82 (2)2.28 (3)2.942 (6)138 (3)
N1—H1N1···O2vii0.87 (3)2.02 (4)2.848 (8)158 (3)
N1—H2N1···Cl10.87 (3)2.34 (1)3.213 (9)180 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O2i0.82 (2)1.74 (2)2.547 (6)170 (4)
O1W—H1W⋯O1ii0.82 (3)2.18 (4)2.978 (6)166 (5)
O1W—H2W⋯O3iii0.82 (2)2.28 (3)2.942 (6)138 (3)
N1—H1N1⋯O2iv0.87 (3)2.02 (4)2.848 (8)158 (3)
N1—H2N1⋯Cl10.87 (3)2.34 (1)3.213 (9)180 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  Ammonium 1-ammonio-ethane-1,1-diylbis(hydrogenphospho-nate) dihydrate.

Authors:  V V Bon; A V Dudko; A N Kozachkova; V I Pekhnyo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

2.  An investigation of bone resorption and Dictyostelium discoideum growth inhibition by bisphosphonate drugs.

Authors:  Christina M Szabo; Michael B Martin; Eric Oldfield
Journal:  J Med Chem       Date:  2002-07-04       Impact factor: 7.446

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.