Literature DB >> 22590160

(Acetato-κO)(2-bromo-6-{[3-(dimethyl-aza-nium-yl)propyl-imino-κN]meth-yl}phenolato-κO)(thio-cyanato-κN)zinc.

Cheng-Li Han1.   

Abstract

In the title compound, [Zn(CH(3)COO)(NCS)(C(12)H(17)BrN(2)O)], the Zn(II) atom is four-coordinated in a distorted tetra-hedral geometry, binding to a phenolate O and an imine N atom of the Schiff base ligand, the O atom of an acetate ligand and one thio-cyanate N atom. In the crystal, mol-ecules are linked via pairs of N-H⋯O hydrogen bonds, forming inversion dimers.

Entities:  

Year:  2012        PMID: 22590160      PMCID: PMC3344398          DOI: 10.1107/S1600536812017564

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a zinc Schiff base complex reported previously by the author, see: Han (2009 ▶). For related zinc complexes, see: Ali et al. (2008 ▶); You (2005 ▶); Zhu & Yang (2008 ▶).

Experimental

Crystal data

[Zn(C2H3O2)(NCS)(C12H17BrN2O)] M = 467.68 Triclinic, a = 9.3091 (6) Å b = 10.2687 (6) Å c = 11.8353 (7) Å α = 66.299 (2)° β = 79.891 (2)° γ = 88.122 (2)° V = 1018.96 (11) Å3 Z = 2 Mo Kα radiation μ = 3.28 mm−1 T = 298 K 0.17 × 0.15 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.605, T max = 0.639 9684 measured reflections 3720 independent reflections 3021 reflections with I > 2σ(I) R int = 0.129

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.201 S = 1.07 3720 reflections 220 parameters H-atom parameters constrained Δρmax = 1.32 e Å−3 Δρmin = −0.61 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812017564/su2407sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017564/su2407Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C2H3O2)(NCS)(C12H17BrN2O)]Z = 2
Mr = 467.68F(000) = 472
Triclinic, P1Dx = 1.524 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3091 (6) ÅCell parameters from 5991 reflections
b = 10.2687 (6) Åθ = 2.2–27.9°
c = 11.8353 (7) ŵ = 3.28 mm1
α = 66.299 (2)°T = 298 K
β = 79.891 (2)°Block, colourless
γ = 88.122 (2)°0.17 × 0.15 × 0.15 mm
V = 1018.96 (11) Å3
Bruker SMART CCD area-detector diffractometer3720 independent reflections
Radiation source: fine-focus sealed tube3021 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.129
ω scansθmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.605, Tmax = 0.639k = −12→12
9684 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.201H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0811P)2 + 2.5468P] where P = (Fo2 + 2Fc2)/3
3720 reflections(Δ/σ)max < 0.001
220 parametersΔρmax = 1.32 e Å3
0 restraintsΔρmin = −0.61 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.71920 (7)0.16314 (7)0.17582 (7)0.0445 (3)
Br10.86805 (11)0.41595 (10)0.41002 (10)0.0872 (4)
N10.5145 (5)0.0900 (5)0.2551 (5)0.0429 (11)
N20.2396 (5)0.2871 (5)−0.0322 (5)0.0436 (11)
H20.21720.2258−0.06530.052*
N30.7308 (6)0.2974 (7)0.0016 (6)0.0642 (15)
O10.7416 (5)0.2599 (5)0.2823 (5)0.0599 (12)
O20.8893 (5)0.0442 (5)0.1972 (5)0.0598 (12)
O30.7888 (5)−0.0922 (5)0.1276 (5)0.0565 (11)
S10.7396 (3)0.5055 (2)−0.2352 (2)0.0807 (6)
C10.5007 (7)0.1983 (6)0.4068 (5)0.0478 (14)
C20.6446 (7)0.2621 (6)0.3737 (6)0.0475 (14)
C30.6772 (9)0.3331 (6)0.4473 (7)0.0589 (17)
C40.5794 (11)0.3442 (7)0.5422 (7)0.070 (2)
H40.60690.39010.58910.084*
C50.4342 (11)0.2853 (8)0.5701 (7)0.075 (2)
H50.36460.29630.63200.090*
C60.4007 (9)0.2134 (7)0.5044 (6)0.0640 (19)
H60.30730.17180.52430.077*
C70.4463 (7)0.1182 (6)0.3462 (6)0.0473 (14)
H70.35030.08260.37670.057*
C80.4325 (7)0.0049 (6)0.2105 (6)0.0486 (14)
H8A0.3428−0.03410.26990.058*
H8B0.4903−0.07400.20650.058*
C90.3960 (6)0.0940 (6)0.0817 (6)0.0430 (13)
H9A0.48390.14380.02480.052*
H9B0.35870.03210.04850.052*
C100.2827 (6)0.2011 (7)0.0899 (6)0.0468 (14)
H10A0.19670.15080.14950.056*
H10B0.32170.26410.12100.056*
C110.3592 (8)0.3865 (8)−0.1235 (8)0.0659 (19)
H11A0.32390.4437−0.19910.099*
H11B0.43920.3329−0.14230.099*
H11C0.39160.4470−0.08790.099*
C120.1071 (7)0.3664 (8)−0.0167 (9)0.074 (2)
H12A0.02870.30060.03790.110*
H12B0.07970.4187−0.09690.110*
H12C0.12690.43140.01920.110*
C130.7343 (6)0.3843 (7)−0.0990 (6)0.0471 (14)
C140.8872 (6)−0.0647 (6)0.1725 (6)0.0418 (13)
C151.0122 (8)−0.1603 (8)0.2014 (8)0.068 (2)
H15A0.9755−0.25590.25350.102*
H15B1.0720−0.12860.24450.102*
H15C1.0694−0.15790.12470.102*
U11U22U33U12U13U23
Zn10.0424 (4)0.0461 (4)0.0530 (5)0.0063 (3)−0.0081 (3)−0.0288 (3)
Br10.1033 (7)0.0773 (6)0.1037 (7)−0.0066 (5)−0.0388 (6)−0.0506 (5)
N10.041 (2)0.038 (2)0.050 (3)0.0034 (19)−0.012 (2)−0.017 (2)
N20.036 (2)0.036 (2)0.073 (3)0.0091 (18)−0.018 (2)−0.034 (2)
N30.047 (3)0.075 (4)0.072 (4)0.007 (3)−0.010 (3)−0.031 (3)
O10.056 (2)0.069 (3)0.072 (3)−0.001 (2)−0.008 (2)−0.047 (3)
O20.053 (2)0.057 (3)0.095 (4)0.016 (2)−0.027 (2)−0.052 (3)
O30.052 (2)0.055 (2)0.082 (3)0.0154 (19)−0.024 (2)−0.044 (2)
S10.0938 (15)0.0725 (13)0.0613 (12)−0.0063 (11)−0.0086 (11)−0.0134 (10)
C10.067 (4)0.038 (3)0.039 (3)0.013 (3)−0.012 (3)−0.017 (2)
C20.062 (4)0.039 (3)0.049 (3)0.013 (3)−0.014 (3)−0.024 (3)
C30.088 (5)0.037 (3)0.057 (4)0.013 (3)−0.023 (4)−0.020 (3)
C40.127 (7)0.044 (3)0.049 (4)0.018 (4)−0.021 (4)−0.027 (3)
C50.112 (7)0.058 (4)0.051 (4)0.016 (4)0.001 (4)−0.025 (3)
C60.084 (5)0.047 (3)0.051 (4)0.011 (3)0.001 (3)−0.015 (3)
C70.047 (3)0.040 (3)0.048 (3)0.002 (2)−0.004 (3)−0.012 (3)
C80.046 (3)0.040 (3)0.062 (4)0.003 (2)−0.011 (3)−0.022 (3)
C90.046 (3)0.041 (3)0.057 (3)0.012 (2)−0.020 (3)−0.032 (3)
C100.042 (3)0.051 (3)0.061 (4)0.012 (2)−0.010 (3)−0.035 (3)
C110.061 (4)0.051 (4)0.079 (5)−0.003 (3)−0.008 (4)−0.021 (4)
C120.048 (3)0.063 (4)0.130 (7)0.027 (3)−0.028 (4)−0.057 (5)
C130.038 (3)0.053 (3)0.055 (4)0.002 (2)−0.005 (3)−0.027 (3)
C140.040 (3)0.040 (3)0.052 (3)0.010 (2)−0.007 (2)−0.026 (3)
C150.058 (4)0.059 (4)0.104 (6)0.023 (3)−0.031 (4)−0.045 (4)
Zn1—O11.931 (4)C5—C61.345 (11)
Zn1—N31.952 (7)C5—H50.9300
Zn1—O21.957 (4)C6—H60.9300
Zn1—N11.994 (5)C7—H70.9300
Br1—C31.897 (8)C8—C91.523 (9)
N1—C71.284 (8)C8—H8A0.9700
N1—C81.476 (8)C8—H8B0.9700
N2—C101.477 (8)C9—C101.518 (7)
N2—C121.482 (7)C9—H9A0.9700
N2—C111.488 (8)C9—H9B0.9700
N2—H20.9100C10—H10A0.9700
N3—C131.161 (9)C10—H10B0.9700
O1—C21.289 (7)C11—H11A0.9600
O2—C141.265 (7)C11—H11B0.9600
O3—C141.229 (7)C11—H11C0.9600
S1—C131.586 (7)C12—H12A0.9600
C1—C61.407 (9)C12—H12B0.9600
C1—C21.430 (9)C12—H12C0.9600
C1—C71.442 (9)C14—C151.493 (8)
C2—C31.414 (9)C15—H15A0.9600
C3—C41.356 (11)C15—H15B0.9600
C4—C51.428 (13)C15—H15C0.9600
C4—H40.9300
O1—Zn1—N3111.3 (2)N1—C8—H8A109.3
O1—Zn1—O2100.4 (2)C9—C8—H8A109.3
N3—Zn1—O2111.2 (2)N1—C8—H8B109.3
O1—Zn1—N196.3 (2)C9—C8—H8B109.3
N3—Zn1—N1111.3 (2)H8A—C8—H8B108.0
O2—Zn1—N1124.1 (2)C10—C9—C8110.5 (5)
C7—N1—C8116.7 (5)C10—C9—H9A109.5
C7—N1—Zn1121.0 (4)C8—C9—H9A109.5
C8—N1—Zn1122.2 (4)C10—C9—H9B109.5
C10—N2—C12111.3 (5)C8—C9—H9B109.5
C10—N2—C11112.8 (5)H9A—C9—H9B108.1
C12—N2—C11110.2 (5)N2—C10—C9112.7 (5)
C10—N2—H2107.4N2—C10—H10A109.1
C12—N2—H2107.4C9—C10—H10A109.1
C11—N2—H2107.4N2—C10—H10B109.1
C13—N3—Zn1175.3 (6)C9—C10—H10B109.1
C2—O1—Zn1125.7 (4)H10A—C10—H10B107.8
C14—O2—Zn1117.7 (4)N2—C11—H11A109.5
C6—C1—C2119.7 (6)N2—C11—H11B109.5
C6—C1—C7115.5 (6)H11A—C11—H11B109.5
C2—C1—C7124.8 (5)N2—C11—H11C109.5
O1—C2—C3119.9 (6)H11A—C11—H11C109.5
O1—C2—C1124.3 (5)H11B—C11—H11C109.5
C3—C2—C1115.8 (6)N2—C12—H12A109.5
C4—C3—C2123.3 (7)N2—C12—H12B109.5
C4—C3—Br1119.1 (6)H12A—C12—H12B109.5
C2—C3—Br1117.6 (5)N2—C12—H12C109.5
C3—C4—C5120.0 (7)H12A—C12—H12C109.5
C3—C4—H4120.0H12B—C12—H12C109.5
C5—C4—H4120.0N3—C13—S1178.7 (6)
C6—C5—C4118.3 (7)O3—C14—O2122.9 (5)
C6—C5—H5120.9O3—C14—C15120.9 (5)
C4—C5—H5120.9O2—C14—C15116.2 (6)
C5—C6—C1122.9 (8)C14—C15—H15A109.5
C5—C6—H6118.6C14—C15—H15B109.5
C1—C6—H6118.6H15A—C15—H15B109.5
N1—C7—C1127.8 (6)C14—C15—H15C109.5
N1—C7—H7116.1H15A—C15—H15C109.5
C1—C7—H7116.1H15B—C15—H15C109.5
N1—C8—C9111.6 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2···O3i0.911.812.703 (6)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O3i0.911.812.703 (6)168

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  {4-Bromo-2-[(2-morpholinoeth-yl)imino-meth-yl]phenolato}iodido(methanol)zinc(II).

Authors:  Cheng-Li Han
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-19

3.  Dichloridobis(2-{1-[2-(1H-indol-3-yl)ethyl-iminio]eth-yl}phenolate-κO)zinc(II)-2-{1-[2-(1H-indol-3-yl)ethyl-iminio]eth-yl}phenolate (1/2).

Authors:  Hapipah M Ali; Mohamed Ibrahim Mohamed Mustafa; Mohd Razali Rizal; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-26

4.  {(E)-2-[3-(Dimethyl-ammonio)propyl-iminometh-yl]phenolato}diiodidozinc(II).

Authors:  Xue-Wen Zhu; Xu-Zhao Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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