Literature DB >> 22590135

catena-Poly[[(2-amino-pyrimidine-κN(1))(thio-cyanato-κS)mercury(II)]-μ-thio-cyanato-κ(2)S:N].

Fatemeh Hoseinzadeh, Sadif A Shirvan, Sara Haydari Dezfuli.   

Abstract

In the title coordination polymer, [Hg(n class="Chemical">NCS)(2)(C(4)H(5)N(3))], the Hg(II) atom is four-coordinated by one aromatic N atom from a 2-amino-pyrimidine ligand, one S atom from a terminal thio-cyanate ligand, and one S atom and one N atom from a bridging thio-cyanate ligand. The crystal structure features polymeric chains running along the b axis which are stabilized by N-H⋯N hydrogen bonds.

Entities:  

Year:  2012        PMID: 22590135      PMCID: PMC3344369          DOI: 10.1107/S1600536812016790

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures with amino­pyridine as a ligand, see: Albada et al. (2002 ▶); Castillo et al. (2011 ▶); Cheng et al. (2009 ▶); Cui et al. (2011 ▶); Gao & Ng (2010 ▶); Lee et al. (2003 ▶); Li et al. (2006 ▶); Lin & Zeng (2007 ▶); n class="Species">Masaki et al. (2002 ▶); Qu et al. (2008 ▶); Zhu et al. (2002 ▶, 2003 ▶).

Experimental

Crystal data

[Hg(NCS)2(C4H5N3)] M = 411.88 Monoclinic, a = 25.819 (2) Å b = 6.0060 (4) Å c = 20.1176 (15) Å β = 136.222 (4)° V = 2158.4 (3) Å3 Z = 8 Mo Kα radiation μ = 14.62 mm−1 T = 298 K 0.25 × 0.22 × 0.11 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: numerical (SADABS; Bruker, 2001 ▶) T min = 0.039, T max = 0.222 7675 measured reflections 2131 independent reflections 1671 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.088 S = 1.10 2131 reflections 127 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −1.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812016790/bt5873sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812016790/bt5873Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Hg(NCS)2(C4H5N3)]F(000) = 1504
Mr = 411.88Dx = 2.535 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 7675 reflections
a = 25.819 (2) Åθ = 2.9–26.0°
b = 6.0060 (4) ŵ = 14.62 mm1
c = 20.1176 (15) ÅT = 298 K
β = 136.222 (4)°Prism, colorless
V = 2158.4 (3) Å30.25 × 0.22 × 0.11 mm
Z = 8
Bruker APEXII CCD area-detector diffractometer2131 independent reflections
Radiation source: fine-focus sealed tube1671 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.078
ω scansθmax = 26.0°, θmin = 2.9°
Absorption correction: numerical (SADABS; Bruker, 2001)h = −31→27
Tmin = 0.039, Tmax = 0.222k = −7→7
7675 measured reflectionsl = −23→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0349P)2] where P = (Fo2 + 2Fc2)/3
2131 reflections(Δ/σ)max = 0.008
127 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −1.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.16617 (2)0.10942 (6)0.33894 (3)0.05561 (16)
S10.1305 (2)0.3052 (4)0.4049 (2)0.0707 (8)
S20.25302 (16)−0.0298 (4)0.3378 (2)0.0641 (7)
C10.0285 (5)0.2478 (15)0.1021 (6)0.049 (2)
C20.0007 (6)−0.0719 (16)0.1318 (7)0.055 (2)
H20.0126−0.17800.17490.067*
C3−0.0648 (5)−0.0935 (19)0.0381 (7)0.058 (3)
H3−0.0961−0.21520.01530.069*
C4−0.0821 (5)0.0738 (17)−0.0211 (7)0.054 (3)
H4−0.12780.0675−0.08550.065*
C50.1323 (6)0.5655 (15)0.3790 (8)0.055 (3)
C60.2379 (5)−0.3009 (18)0.3346 (6)0.047 (2)
N10.0752 (5)0.4154 (14)0.1322 (6)0.073 (3)
H1A0.11760.42340.19160.088*
H1B0.06290.51550.09230.088*
N20.0491 (4)0.0940 (11)0.1659 (5)0.0437 (16)
N3−0.0368 (4)0.2472 (13)0.0082 (5)0.051 (2)
N40.1294 (7)0.7461 (14)0.3608 (9)0.090 (4)
N50.2301 (5)−0.4879 (17)0.3329 (7)0.070 (3)
U11U22U33U12U13U23
Hg10.0759 (3)0.03563 (19)0.0604 (2)0.0129 (2)0.0510 (2)0.0059 (2)
S10.123 (3)0.0400 (12)0.097 (2)−0.0033 (15)0.096 (2)−0.0014 (14)
S20.0652 (17)0.0482 (13)0.0875 (19)−0.0009 (13)0.0581 (16)−0.0002 (13)
C10.047 (5)0.049 (5)0.041 (5)0.004 (4)0.029 (5)−0.001 (4)
C20.062 (6)0.050 (6)0.063 (6)−0.005 (5)0.048 (6)0.002 (5)
C30.047 (5)0.073 (7)0.058 (6)−0.013 (5)0.039 (5)−0.005 (6)
C40.039 (5)0.072 (7)0.045 (5)−0.006 (5)0.028 (4)−0.004 (5)
C50.080 (7)0.045 (6)0.074 (7)0.010 (5)0.067 (6)0.013 (5)
C60.033 (5)0.050 (5)0.049 (5)0.001 (4)0.026 (5)−0.005 (4)
N10.062 (5)0.058 (5)0.043 (4)−0.017 (4)0.018 (4)0.007 (4)
N20.047 (4)0.036 (4)0.042 (4)0.004 (3)0.030 (3)0.006 (3)
N30.037 (4)0.062 (5)0.042 (4)−0.007 (4)0.024 (4)−0.005 (4)
N40.163 (11)0.036 (5)0.164 (11)0.016 (6)0.148 (10)0.014 (6)
N50.063 (6)0.051 (5)0.089 (7)−0.004 (5)0.053 (6)−0.016 (5)
Hg1—S12.399 (5)N3—C41.343 (16)
Hg1—S22.409 (5)N4—C51.130 (13)
Hg1—N22.464 (7)N5—C61.137 (15)
Hg1—N4i2.542 (13)N1—H1B0.8600
S1—C51.659 (11)N1—H1A0.8600
S2—C61.665 (11)C2—C31.352 (15)
N1—C11.334 (16)C3—C41.364 (16)
N2—C11.341 (12)C2—H20.9300
N2—C21.337 (16)C3—H30.9300
N3—C11.346 (12)C4—H40.9300
Hg1···N5ii2.980 (13)C2···S1iii3.679 (16)
Hg1···H1A2.9200C3···S1iii3.569 (15)
S1···N4i3.468 (10)C4···S1iii3.630 (15)
S1···C2iii3.679 (16)C4···N5vii3.44 (2)
S1···C3iii3.569 (15)C4···C1vi3.400 (19)
S1···C4iii3.630 (15)C5···C6ii3.52 (2)
S2···N5ii3.297 (11)C5···N5ii3.27 (2)
S2···H3iv3.1900C6···C5i3.52 (2)
N1···N5ii3.052 (14)C1···H1Bv3.0900
N1···N3v3.004 (13)C4···H1Bv3.0700
N3···N1v3.004 (13)C6···H1Ai2.7900
N4···C6ii3.22 (3)C6···H3iv3.0200
N4···S1ii3.468 (10)C6···H4iv3.0200
N4···C2ii3.370 (16)H1A···Hg12.9200
N5···N1i3.052 (14)H1A···N5ii2.2100
N5···C4iv3.44 (2)H1A···C6ii2.7900
N5···Hg1i2.980 (13)H1B···N3v2.1500
N5···S2i3.297 (11)H1B···C1v3.0900
N5···C5i3.27 (2)H1B···C4v3.0700
N3···H1Bv2.1500H2···N4i2.6500
N4···H2ii2.6500H3···S2vii3.1900
N5···H1Ai2.2100H3···C6vii3.0200
N5···H4iv2.7700H4···N5vii2.7700
C1···C4vi3.400 (19)H4···C6vii3.0200
S1—Hg1—S2155.11 (12)C1—N1—H1B120.00
S1—Hg1—N2103.3 (3)N1—C1—N2118.8 (8)
S1—Hg1—N4i89.1 (4)N1—C1—N3116.4 (9)
S2—Hg1—N2100.0 (3)N2—C1—N3124.8 (10)
S2—Hg1—N4i99.8 (5)N2—C2—C3123.5 (10)
N2—Hg1—N4i89.0 (4)C2—C3—C4116.0 (11)
Hg1—S1—C5100.3 (6)N3—C4—C3123.8 (10)
Hg1—S2—C698.4 (6)S1—C5—N4175 (2)
Hg1—N2—C1124.1 (7)S2—C6—N5177.0 (15)
Hg1—N2—C2119.5 (6)N2—C2—H2118.00
C1—N2—C2116.4 (8)C3—C2—H2118.00
C1—N3—C4115.4 (9)C2—C3—H3122.00
Hg1ii—N4—C5159.2 (18)C4—C3—H3122.00
H1A—N1—H1B120.00N3—C4—H4118.00
C1—N1—H1A120.00C3—C4—H4118.00
S2—Hg1—S1—C579.5 (5)S2—Hg1—N4i—C5i18 (3)
N2—Hg1—S1—C5−80.0 (5)N2—Hg1—N4i—C5i118 (3)
N4i—Hg1—S1—C5−168.8 (6)Hg1—N2—C1—N13.2 (18)
S1—Hg1—S2—C6118.0 (4)C2—N2—C1—N1−179.2 (13)
N2—Hg1—S2—C6−82.3 (4)Hg1—N2—C1—N3−176.8 (10)
N4i—Hg1—S2—C68.4 (4)C2—N2—C1—N31 (2)
S1—Hg1—N2—C191.2 (11)C1—N2—C2—C32 (2)
S1—Hg1—N2—C2−86.3 (10)Hg1—N2—C2—C3180.0 (12)
S2—Hg1—N2—C1−80.2 (10)C4—N3—C1—N2−2 (2)
S2—Hg1—N2—C2102.3 (11)C4—N3—C1—N1178.3 (13)
N4i—Hg1—N2—C1−179.9 (11)C1—N3—C4—C30 (2)
N4i—Hg1—N2—C22.5 (11)N2—C2—C3—C4−4 (2)
S1—Hg1—N4i—C5i−139 (3)C2—C3—C4—N33 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N5ii0.862.213.052 (14)167
N1—H1B···N3v0.862.153.004 (13)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N5i0.862.213.052 (14)167
N1—H1B⋯N3ii0.862.153.004 (13)176

Symmetry codes: (i) ; (ii) .

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