Literature DB >> 21202255

Bis(2-amino-pyrimidine-κN)dibromidozinc(II).

Yang Qu, Shi Ming Zhang, Xian Zong Wu, Huan Zhang, Zhi Dong Lin.   

Abstract

The title compound, [ZnBr(2)(C(4)H(5)N(3))(2)], is a mononuclear complex in which the Zn(II) ions have distorted tetra-hedral coordination geometry. The Zn(II) ion binds to two N atoms from two different 2-amino-pyrimidine ligands and two bromide ions. N-H⋯N hydrogen bonds link the mol-ecules to form a one-dimensional supra-molecular structure. The supra-molecular chains are parallel to each other and N-H⋯Br hydrogen bonds link them into a two-dimensional network in the ac plane. Additionally, there are strong π-π inter-actions [centroid-centroid distance = 3.403 (3) Å].

Entities:  

Year:  2008        PMID: 21202255      PMCID: PMC2961077          DOI: 10.1107/S1600536808006466

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Bourne et al. (2001 ▶); Etter et al. (1990 ▶); Lin & Zeng (2007 ▶); Pon et al. (1997 ▶).

Experimental

Crystal data

[ZnBr2(C4H5N3)2] M = 415.41 Triclinic, a = 6.7912 (11) Å b = 7.2197 (12) Å c = 15.512 (3) Å α = 81.060 (3)° β = 83.823 (3)° γ = 63.132 (2)° V = 669.61 (19) Å3 Z = 2 Mo Kα radiation μ = 7.79 mm−1 T = 292 (2) K 0.20 × 0.16 × 0.14 mm

Data collection

Siemens SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.305, T max = 0.408 (expected range = 0.251–0.336) 5351 measured reflections 2342 independent reflections 1878 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.110 S = 1.02 2342 reflections 156 parameters H-atom parameters constrained Δρmax = 0.80 e Å−3 Δρmin = −0.69 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808006466/rn2036sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006466/rn2036Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnBr2(C4H5N3)2]Z = 2
Mr = 415.41F000 = 400
Triclinic, P1Dx = 2.060 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.7912 (11) ÅCell parameters from 2800 reflections
b = 7.2197 (12) Åθ = 2.1–28.7º
c = 15.512 (3) ŵ = 7.79 mm1
α = 81.060 (3)ºT = 292 (2) K
β = 83.823 (3)ºBlock, white
γ = 63.132 (2)º0.20 × 0.16 × 0.14 mm
V = 669.61 (19) Å3
Siemens SMART CCD area-detector diffractometer2342 independent reflections
Radiation source: fine-focus sealed tube1878 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.074
T = 292(2) Kθmax = 25.0º
φ and ω scansθmin = 2.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −8→7
Tmin = 0.305, Tmax = 0.409k = −8→8
5351 measured reflectionsl = −18→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.110  w = 1/[σ2(Fo2) + (0.0639P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2342 reflectionsΔρmax = 0.80 e Å3
156 parametersΔρmin = −0.68 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.19184 (13)0.75744 (9)0.20800 (4)0.0660 (2)
Br20.57558 (9)0.19239 (9)0.31136 (4)0.0528 (2)
C10.2693 (11)0.1954 (8)0.0989 (3)0.0472 (14)
C2−0.0153 (14)0.2437 (10)0.0194 (4)0.0631 (18)
H2−0.06640.2230−0.02980.076*
C3−0.1718 (12)0.3635 (10)0.0799 (4)0.0613 (17)
H3−0.32310.41710.07370.074*
C4−0.0852 (11)0.3955 (9)0.1486 (4)0.0527 (15)
H4−0.18150.47670.19010.063*
C5−0.0098 (7)0.2696 (8)0.4074 (3)0.0322 (10)
C6−0.2637 (9)0.4775 (9)0.5028 (3)0.0470 (14)
H6−0.34390.49250.55590.056*
C7−0.2909 (8)0.6530 (9)0.4488 (4)0.0481 (14)
H7−0.39320.78480.46220.058*
C8−0.1607 (8)0.6272 (8)0.3737 (3)0.0452 (13)
H8−0.17380.74490.33570.054*
N10.1338 (8)0.3141 (7)0.1588 (2)0.0412 (10)
N20.1963 (11)0.1600 (8)0.0279 (3)0.0594 (14)
N30.4858 (9)0.1121 (9)0.1065 (3)0.0674 (16)
H3A0.51010.11350.15240.101*
H3B0.55060.15970.06070.101*
N4−0.0134 (6)0.4360 (6)0.3530 (2)0.0356 (9)
N5−0.1293 (7)0.2848 (7)0.4844 (3)0.0414 (10)
N60.1223 (8)0.0761 (7)0.3887 (3)0.0477 (11)
H6A0.16460.08020.34210.071*
H6B0.04490.00260.39500.071*
Zn10.22458 (9)0.41974 (8)0.25651 (3)0.0358 (2)
U11U22U33U12U13U23
Br10.1151 (6)0.0446 (4)0.0495 (4)−0.0468 (4)0.0003 (3)−0.0032 (3)
Br20.0431 (4)0.0522 (4)0.0541 (4)−0.0125 (3)0.0026 (3)−0.0125 (3)
C10.082 (5)0.042 (3)0.033 (3)−0.042 (3)0.011 (3)−0.011 (2)
C20.115 (6)0.062 (4)0.037 (3)−0.061 (4)−0.013 (3)0.002 (3)
C30.086 (5)0.067 (4)0.051 (4)−0.051 (4)−0.017 (3)0.005 (3)
C40.081 (5)0.050 (3)0.040 (3)−0.040 (3)−0.002 (3)−0.005 (3)
C50.027 (2)0.041 (3)0.027 (2)−0.014 (2)0.0021 (18)−0.007 (2)
C60.042 (3)0.068 (4)0.038 (3)−0.028 (3)0.009 (2)−0.024 (3)
C70.032 (3)0.050 (3)0.058 (3)−0.010 (3)0.009 (2)−0.024 (3)
C80.041 (3)0.037 (3)0.045 (3)−0.006 (2)0.001 (2)−0.007 (2)
N10.063 (3)0.049 (3)0.027 (2)−0.037 (2)0.0078 (19)−0.0118 (19)
N20.109 (5)0.058 (3)0.036 (3)−0.056 (3)0.004 (3)−0.015 (2)
N30.081 (4)0.090 (4)0.049 (3)−0.049 (3)0.023 (3)−0.041 (3)
N40.036 (2)0.038 (2)0.030 (2)−0.0123 (18)0.0025 (16)−0.0095 (18)
N50.040 (2)0.056 (3)0.030 (2)−0.023 (2)0.0061 (18)−0.011 (2)
N60.056 (3)0.044 (3)0.042 (3)−0.022 (2)0.014 (2)−0.011 (2)
Zn10.0478 (4)0.0332 (3)0.0277 (3)−0.0190 (3)0.0045 (2)−0.0081 (2)
Br1—Zn12.3528 (9)C5—N51.360 (6)
Br2—Zn12.3593 (8)C6—N51.330 (7)
C1—N31.324 (8)C6—C71.354 (8)
C1—N11.340 (7)C6—H60.9300
C1—N21.358 (7)C7—C81.368 (8)
C2—N21.295 (9)C7—H70.9300
C2—C31.401 (10)C8—N41.353 (6)
C2—H20.9300C8—H80.9300
C3—C41.368 (8)N1—Zn12.060 (4)
C3—H30.9300N3—H3A0.7500
C4—N11.347 (8)N3—H3B0.9006
C4—H40.9300N4—Zn12.056 (4)
C5—N61.333 (6)N6—H6A0.7500
C5—N41.348 (6)N6—H6B0.8901
N3—C1—N1119.5 (5)N4—C8—H8119.0
N3—C1—N2117.2 (5)C7—C8—H8119.0
N1—C1—N2123.2 (6)C1—N1—C4117.6 (5)
N2—C2—C3124.1 (6)C1—N1—Zn1126.4 (4)
N2—C2—H2118.0C4—N1—Zn1115.4 (3)
C3—C2—H2118.0C2—N2—C1117.5 (6)
C4—C3—C2114.9 (7)C1—N3—H3A109.5
C4—C3—H3122.5C1—N3—H3B111.2
C2—C3—H3122.5H3A—N3—H3B120.6
N1—C4—C3122.7 (6)C5—N4—C8116.8 (4)
N1—C4—H4118.6C5—N4—Zn1124.1 (3)
C3—C4—H4118.6C8—N4—Zn1118.1 (4)
N6—C5—N4120.2 (4)C6—N5—C5116.2 (5)
N6—C5—N5116.0 (5)C5—N6—H6A109.5
N4—C5—N5123.8 (4)C5—N6—H6B109.0
N5—C6—C7123.9 (5)H6A—N6—H6B108.2
N5—C6—H6118.0N4—Zn1—N1101.97 (16)
C7—C6—H6118.0N4—Zn1—Br1109.63 (11)
C6—C7—C8116.9 (5)N1—Zn1—Br1109.06 (12)
C6—C7—H7121.6N4—Zn1—Br2108.97 (11)
C8—C7—H7121.6N1—Zn1—Br2114.70 (13)
N4—C8—C7122.1 (5)Br1—Zn1—Br2112.00 (3)
N2—C2—C3—C42.8 (9)C7—C8—N4—C53.9 (7)
C2—C3—C4—N1−1.5 (9)C7—C8—N4—Zn1−164.7 (4)
N5—C6—C7—C8−4.1 (8)C7—C6—N5—C52.0 (7)
C6—C7—C8—N41.0 (8)N6—C5—N5—C6−179.1 (4)
N3—C1—N1—C4−179.8 (5)N4—C5—N5—C63.5 (7)
N2—C1—N1—C42.2 (8)C5—N4—Zn1—N179.9 (4)
N3—C1—N1—Zn19.2 (7)C8—N4—Zn1—N1−112.3 (4)
N2—C1—N1—Zn1−168.8 (4)C5—N4—Zn1—Br1−164.6 (3)
C3—C4—N1—C1−0.8 (8)C8—N4—Zn1—Br13.2 (4)
C3—C4—N1—Zn1171.2 (5)C5—N4—Zn1—Br2−41.7 (4)
C3—C2—N2—C1−1.5 (9)C8—N4—Zn1—Br2126.0 (3)
N3—C1—N2—C2−179.1 (5)C1—N1—Zn1—N4−149.6 (4)
N1—C1—N2—C2−1.1 (8)C4—N1—Zn1—N439.2 (4)
N6—C5—N4—C8176.3 (4)C1—N1—Zn1—Br194.5 (4)
N5—C5—N4—C8−6.3 (7)C4—N1—Zn1—Br1−76.7 (4)
N6—C5—N4—Zn1−15.8 (6)C1—N1—Zn1—Br2−32.1 (5)
N5—C5—N4—Zn1161.6 (3)C4—N1—Zn1—Br2156.8 (3)
D—H···AD—HH···AD···AD—H···A
C8—H8···Br2i0.932.873.651 (5)142
N6—H6B···N5ii0.892.472.996 (6)119
N3—H3A···Br20.752.743.480 (5)170
Table 1

Selected bond lengths (Å)

Br1—Zn12.3528 (9)
Br2—Zn12.3593 (8)
N1—Zn12.060 (4)
N4—Zn12.056 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8⋯Br2i0.932.873.651 (5)142
N6—H6B⋯N5ii0.892.472.996 (6)119
N3—H3A⋯Br20.752.743.480 (5)170

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01
  2 in total
  1 in total

1.  catena-Poly[[(2-amino-pyrimidine-κN(1))(thio-cyanato-κS)mercury(II)]-μ-thio-cyanato-κ(2)S:N].

Authors:  Fatemeh Hoseinzadeh; Sadif A Shirvan; Sara Haydari Dezfuli
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21
  1 in total

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