Literature DB >> 22589974

3-Amino-1-(3,4-dimeth-oxy-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Abdullah M Asiri, Hassan M Faidallah, Khalid A Alamry, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(24)H(19)N(3)O(2), the partially saturated ring adopts a distorted half-chair conformation with the n class="Chemical">methyl-ene-C atom closest to the amino-benzene ring lying 0.664 (3) Å out of the plane defined by the five remaining atoms (r.m.s. deviation = 0.1429 Å. The dihedral angle [32.01 (10)°] between the benzene rings on either side of this ring indicates a significant fold in this part of the mol-ecule. The dimeth-oxy-substituted benzene ring is almost orthogonal to the benzene ring to which it is attached [dihedral angle = 72.03 (9)°]. The mol-ecule has been observed previously as the major component of a 1:19 co-crystal with 2-amino-4-(3,4-dimeth-oxy-phen-yl)-5,6-dihydro-benzo[ha]quinoline-3-carbonitrile [Asiri et al. (2011). Acta Cryst. E67, o2873-o2873]. Supra-molecular chains with base vector [201] are formed in the crystal structure via N-H⋯O hydrogen bonds between the amino H atoms of one mol-ecule inter-acting with the meth-oxy O atoms of a neighbouring mol-ecule. The chains are linked into a three-dimensional architecture by C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22589974      PMCID: PMC3344065          DOI: 10.1107/S1600536812011129

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of related phenanthrene compounds, see: Wang et al. (2010 ▶); Rostom et al. (2011 ▶). For related structures, see: Asiri et al. (2011a ▶,b ▶); n class="Chemical">Al-Youbi et al. (2012 ▶).

Experimental

Crystal data

C24H19N3O2 M = 381.42 Monoclinic, a = 8.9360 (7) Å b = 14.5007 (11) Å c = 14.8074 (11) Å β = 103.471 (8)° V = 1865.9 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.20 × 0.15 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.983, T max = 0.991 8105 measured reflections 4272 independent reflections 2851 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.136 S = 1.03 4272 reflections 270 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812011129/sj5212sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812011129/sj5212Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812011129/sj5212Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H19N3O2F(000) = 800
Mr = 381.42Dx = 1.358 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2185 reflections
a = 8.9360 (7) Åθ = 2.4–27.5°
b = 14.5007 (11) ŵ = 0.09 mm1
c = 14.8074 (11) ÅT = 100 K
β = 103.471 (8)°Chip, orange
V = 1865.9 (2) Å30.20 × 0.15 × 0.10 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector4272 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2851 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.037
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.7°
ω scanh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −18→17
Tmin = 0.983, Tmax = 0.991l = −11→19
8105 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0526P)2 + 0.2552P] where P = (Fo2 + 2Fc2)/3
4272 reflections(Δ/σ)max = 0.001
270 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.23 e Å3
xyzUiso*/Ueq
O10.69410 (14)0.85996 (10)0.89152 (10)0.0255 (4)
O20.92377 (14)0.80208 (9)0.82524 (9)0.0215 (3)
N1−0.21440 (18)0.47271 (12)0.60427 (12)0.0271 (4)
N2−0.0035 (2)0.62438 (13)0.51881 (12)0.0243 (4)
N30.31457 (19)0.75869 (13)0.50677 (13)0.0278 (4)
C10.1055 (2)0.47341 (14)0.82665 (13)0.0231 (5)
C2−0.0456 (2)0.47157 (15)0.83797 (15)0.0289 (5)
H2A−0.12340.50580.79680.035*
C3−0.0831 (3)0.42019 (16)0.90882 (16)0.0347 (6)
H3−0.18590.41940.91600.042*
C40.0298 (3)0.37015 (16)0.96890 (16)0.0393 (6)
H40.00380.33381.01640.047*
C50.1807 (3)0.37300 (15)0.95975 (15)0.0350 (6)
H50.25760.33881.00140.042*
C60.2208 (2)0.42536 (15)0.89025 (14)0.0279 (5)
C70.3846 (2)0.43614 (15)0.88204 (15)0.0313 (5)
H7A0.40290.39730.83070.038*
H7B0.45610.41620.94030.038*
C80.4127 (2)0.53735 (15)0.86299 (14)0.0273 (5)
H8A0.39670.57600.91510.033*
H8B0.52000.54590.85730.033*
C90.3017 (2)0.56644 (14)0.77347 (13)0.0215 (4)
C100.1525 (2)0.52829 (14)0.75366 (13)0.0207 (4)
C110.0532 (2)0.54618 (13)0.66663 (13)0.0182 (4)
C120.0953 (2)0.60554 (13)0.60093 (13)0.0189 (4)
C130.2426 (2)0.64665 (13)0.62557 (13)0.0186 (4)
C140.3445 (2)0.62742 (13)0.71120 (13)0.0198 (4)
C15−0.0950 (2)0.50286 (14)0.63642 (14)0.0221 (4)
C160.2857 (2)0.70935 (14)0.56101 (14)0.0210 (4)
C170.4968 (2)0.67539 (14)0.73596 (13)0.0199 (4)
C180.5213 (2)0.74481 (14)0.80346 (14)0.0215 (5)
H180.44020.76230.83150.026*
C190.6633 (2)0.78845 (13)0.82984 (13)0.0193 (4)
C200.7852 (2)0.75935 (13)0.79148 (13)0.0182 (4)
C210.7588 (2)0.69338 (14)0.72295 (14)0.0241 (5)
H210.83940.67610.69440.029*
C220.6146 (2)0.65146 (15)0.69485 (14)0.0249 (5)
H220.59770.60620.64710.030*
C230.5626 (2)0.90343 (16)0.91355 (16)0.0333 (6)
H23A0.59690.95320.95830.050*
H23B0.50470.85780.94050.050*
H23C0.49630.92890.85680.050*
C241.0509 (2)0.76905 (15)0.79032 (15)0.0257 (5)
H24A1.14340.80470.81810.039*
H24B1.02740.77620.72270.039*
H24C1.06880.70380.80630.039*
H1−0.105 (3)0.5996 (17)0.5047 (17)0.044 (7)*
H20.028 (3)0.6568 (18)0.4750 (18)0.040 (7)*
U11U22U33U12U13U23
O10.0178 (7)0.0281 (8)0.0307 (8)0.0001 (6)0.0057 (6)−0.0119 (7)
O20.0141 (6)0.0248 (8)0.0260 (7)−0.0022 (5)0.0054 (5)−0.0058 (6)
N10.0207 (9)0.0277 (10)0.0327 (10)−0.0014 (7)0.0060 (7)0.0010 (8)
N20.0186 (9)0.0298 (11)0.0222 (9)−0.0030 (7)−0.0002 (7)0.0048 (8)
N30.0257 (9)0.0278 (10)0.0300 (10)−0.0031 (7)0.0065 (8)0.0015 (9)
C10.0304 (11)0.0185 (11)0.0196 (10)−0.0063 (8)0.0040 (8)−0.0041 (9)
C20.0353 (12)0.0265 (12)0.0266 (11)−0.0058 (9)0.0111 (9)−0.0031 (10)
C30.0497 (15)0.0289 (13)0.0306 (12)−0.0118 (10)0.0193 (11)−0.0060 (10)
C40.0641 (17)0.0315 (14)0.0255 (12)−0.0142 (12)0.0170 (11)−0.0022 (11)
C50.0537 (15)0.0264 (13)0.0213 (11)−0.0054 (11)0.0016 (10)0.0002 (10)
C60.0400 (13)0.0228 (12)0.0179 (10)−0.0055 (9)0.0008 (9)−0.0011 (9)
C70.0355 (12)0.0286 (13)0.0232 (11)0.0008 (9)−0.0063 (9)0.0025 (10)
C80.0278 (11)0.0302 (12)0.0203 (10)−0.0025 (9)−0.0020 (8)−0.0014 (10)
C90.0222 (10)0.0198 (11)0.0200 (10)0.0011 (8)−0.0001 (8)−0.0023 (9)
C100.0229 (10)0.0191 (11)0.0196 (10)−0.0005 (8)0.0038 (8)−0.0020 (9)
C110.0161 (9)0.0168 (10)0.0221 (9)−0.0009 (7)0.0049 (7)−0.0037 (8)
C120.0163 (9)0.0192 (10)0.0202 (9)0.0017 (7)0.0025 (7)−0.0024 (8)
C130.0164 (9)0.0177 (10)0.0221 (10)−0.0003 (7)0.0055 (7)−0.0015 (8)
C140.0163 (9)0.0206 (10)0.0223 (10)0.0021 (8)0.0036 (8)−0.0048 (9)
C150.0241 (10)0.0220 (11)0.0215 (10)0.0001 (8)0.0080 (8)0.0011 (9)
C160.0165 (10)0.0221 (11)0.0234 (10)−0.0007 (8)0.0026 (8)−0.0029 (9)
C170.0155 (9)0.0217 (10)0.0206 (10)0.0007 (8)0.0001 (7)0.0006 (9)
C180.0152 (9)0.0264 (11)0.0229 (10)0.0026 (8)0.0042 (8)−0.0011 (9)
C190.0188 (10)0.0190 (10)0.0185 (9)0.0019 (8)0.0009 (7)−0.0034 (8)
C200.0132 (9)0.0200 (10)0.0203 (10)0.0014 (7)0.0013 (7)0.0023 (8)
C210.0177 (10)0.0292 (12)0.0266 (11)−0.0009 (8)0.0078 (8)−0.0060 (9)
C220.0206 (10)0.0298 (12)0.0232 (10)−0.0008 (8)0.0030 (8)−0.0078 (9)
C230.0241 (11)0.0366 (14)0.0410 (13)0.0009 (9)0.0109 (9)−0.0171 (11)
C240.0177 (10)0.0287 (12)0.0323 (11)−0.0027 (8)0.0087 (8)−0.0074 (10)
O1—C191.367 (2)C8—H8B0.9900
O1—C231.437 (2)C9—C141.394 (3)
O2—C201.371 (2)C9—C101.410 (3)
O2—C241.436 (2)C10—C111.408 (2)
N1—C151.149 (2)C11—C121.414 (3)
N2—C121.354 (2)C11—C151.440 (3)
N2—H10.95 (2)C12—C131.413 (3)
N2—H20.90 (3)C13—C141.406 (2)
N3—C161.149 (3)C13—C161.435 (3)
C1—C21.400 (3)C14—C171.496 (3)
C1—C61.408 (3)C17—C221.377 (3)
C1—C101.479 (3)C17—C181.400 (3)
C2—C31.390 (3)C18—C191.390 (3)
C2—H2A0.9500C18—H180.9500
C3—C41.384 (3)C19—C201.405 (3)
C3—H30.9500C20—C211.374 (3)
C4—C51.387 (3)C21—C221.398 (3)
C4—H40.9500C21—H210.9500
C5—C61.391 (3)C22—H220.9500
C5—H50.9500C23—H23A0.9800
C6—C71.504 (3)C23—H23B0.9800
C7—C81.526 (3)C23—H23C0.9800
C7—H7A0.9900C24—H24A0.9800
C7—H7B0.9900C24—H24B0.9800
C8—C91.518 (2)C24—H24C0.9800
C8—H8A0.9900
C19—O1—C23115.90 (15)C12—C11—C15115.13 (16)
C20—O2—C24116.20 (15)N2—C12—C13121.33 (19)
C12—N2—H1120.6 (15)N2—C12—C11121.24 (17)
C12—N2—H2120.2 (15)C13—C12—C11117.39 (16)
H1—N2—H2119 (2)C14—C13—C12121.20 (18)
C2—C1—C6119.1 (2)C14—C13—C16120.53 (17)
C2—C1—C10122.94 (18)C12—C13—C16118.26 (16)
C6—C1—C10117.84 (19)C9—C14—C13120.14 (17)
C3—C2—C1120.6 (2)C9—C14—C17120.47 (16)
C3—C2—H2A119.7C13—C14—C17119.35 (18)
C1—C2—H2A119.7N1—C15—C11173.3 (2)
C4—C3—C2119.9 (2)N3—C16—C13177.17 (19)
C4—C3—H3120.0C22—C17—C18119.25 (18)
C2—C3—H3120.0C22—C17—C14121.31 (18)
C3—C4—C5120.0 (2)C18—C17—C14119.43 (18)
C3—C4—H4120.0C19—C18—C17120.58 (19)
C5—C4—H4120.0C19—C18—H18119.7
C4—C5—C6120.8 (2)C17—C18—H18119.7
C4—C5—H5119.6O1—C19—C18124.16 (18)
C6—C5—H5119.6O1—C19—C20116.35 (16)
C5—C6—C1119.4 (2)C18—C19—C20119.49 (18)
C5—C6—C7122.66 (19)O2—C20—C21124.66 (18)
C1—C6—C7117.94 (19)O2—C20—C19115.86 (17)
C6—C7—C8108.65 (18)C21—C20—C19119.47 (17)
C6—C7—H7A110.0C20—C21—C22120.66 (19)
C8—C7—H7A110.0C20—C21—H21119.7
C6—C7—H7B110.0C22—C21—H21119.7
C8—C7—H7B110.0C17—C22—C21120.35 (19)
H7A—C7—H7B108.3C17—C22—H22119.8
C9—C8—C7109.05 (16)C21—C22—H22119.8
C9—C8—H8A109.9O1—C23—H23A109.5
C7—C8—H8A109.9O1—C23—H23B109.5
C9—C8—H8B109.9H23A—C23—H23B109.5
C7—C8—H8B109.9O1—C23—H23C109.5
H8A—C8—H8B108.3H23A—C23—H23C109.5
C14—C9—C10120.23 (16)H23B—C23—H23C109.5
C14—C9—C8121.98 (17)O2—C24—H24A109.5
C10—C9—C8117.78 (18)O2—C24—H24B109.5
C11—C10—C9118.79 (18)H24A—C24—H24B109.5
C11—C10—C1122.85 (17)O2—C24—H24C109.5
C9—C10—C1118.33 (16)H24A—C24—H24C109.5
C10—C11—C12122.02 (16)H24B—C24—H24C109.5
C10—C11—C15122.79 (18)
C6—C1—C2—C3−2.5 (3)C11—C12—C13—C141.5 (3)
C10—C1—C2—C3−178.78 (19)N2—C12—C13—C16−0.1 (3)
C1—C2—C3—C4−0.1 (3)C11—C12—C13—C16−178.12 (18)
C2—C3—C4—C51.5 (3)C10—C9—C14—C13−4.1 (3)
C3—C4—C5—C6−0.4 (3)C8—C9—C14—C13174.73 (19)
C4—C5—C6—C1−2.2 (3)C10—C9—C14—C17173.87 (19)
C4—C5—C6—C7175.3 (2)C8—C9—C14—C17−7.3 (3)
C2—C1—C6—C53.6 (3)C12—C13—C14—C90.4 (3)
C10—C1—C6—C5−179.94 (18)C16—C13—C14—C9−179.99 (19)
C2—C1—C6—C7−174.09 (19)C12—C13—C14—C17−177.60 (18)
C10—C1—C6—C72.4 (3)C16—C13—C14—C172.0 (3)
C5—C6—C7—C8−135.7 (2)C9—C14—C17—C22107.8 (2)
C1—C6—C7—C841.9 (2)C13—C14—C17—C22−74.2 (3)
C6—C7—C8—C9−59.5 (2)C9—C14—C17—C18−71.0 (3)
C7—C8—C9—C14−143.2 (2)C13—C14—C17—C18106.9 (2)
C7—C8—C9—C1035.7 (3)C22—C17—C18—C19−0.9 (3)
C14—C9—C10—C115.8 (3)C14—C17—C18—C19177.97 (18)
C8—C9—C10—C11−173.11 (18)C23—O1—C19—C18−13.7 (3)
C14—C9—C10—C1−172.40 (19)C23—O1—C19—C20165.87 (18)
C8—C9—C10—C18.7 (3)C17—C18—C19—O1176.45 (17)
C2—C1—C10—C11−31.5 (3)C17—C18—C19—C20−3.1 (3)
C6—C1—C10—C11152.19 (19)C24—O2—C20—C21−5.0 (3)
C2—C1—C10—C9146.6 (2)C24—O2—C20—C19176.54 (17)
C6—C1—C10—C9−29.7 (3)O1—C19—C20—O24.2 (2)
C9—C10—C11—C12−3.9 (3)C18—C19—C20—O2−176.20 (17)
C1—C10—C11—C12174.20 (19)O1—C19—C20—C21−174.28 (17)
C9—C10—C11—C15173.50 (19)C18—C19—C20—C215.3 (3)
C1—C10—C11—C15−8.4 (3)O2—C20—C21—C22178.03 (18)
C10—C11—C12—N2−177.79 (19)C19—C20—C21—C22−3.6 (3)
C15—C11—C12—N24.6 (3)C18—C17—C22—C212.6 (3)
C10—C11—C12—C130.3 (3)C14—C17—C22—C21−176.20 (18)
C15—C11—C12—C13−177.29 (18)C20—C21—C22—C17−0.4 (3)
N2—C12—C13—C14179.56 (19)
D—H···AD—HH···AD···AD—H···A
N2—H1···O1i0.95 (2)2.23 (2)2.921 (2)129 (2)
N2—H2···O2i0.90 (3)2.28 (3)2.984 (2)135 (2)
C24—H24B···Cg1ii0.982.783.538 (2)135
C7—H7A···Cg4iii0.992.923.792 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and C17–C22 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1⋯O1i0.95 (2)2.23 (2)2.921 (2)129 (2)
N2—H2⋯O2i0.90 (3)2.28 (3)2.984 (2)135 (2)
C24—H24BCg1ii0.982.783.538 (2)135
C7—H7ACg4iii0.992.923.792 (2)147

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design, synthesis, and antiviral evaluation of phenanthrene-based tylophorine derivatives as potential antiviral agents.

Authors:  Kailiang Wang; Yanna Hu; Yuxiu Liu; Na Mi; Zhijin Fan; Yu Liu; Qingmin Wang
Journal:  J Agric Food Chem       Date:  2010-11-08       Impact factor: 5.279

3.  2-Amino-4-(3,4-dimeth-oxy-phen-yl)-5,6-dihydro-benzo[h]quinoline-3-carbo-nitrile-3-amino-1-(3,4-dimeth-oxy-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile (1/19).

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-08

4.  3-Amino-1-(4-meth-oxy-phen-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Authors:  Abdullah M Asiri; Abdulrahman O Al-Youbi; Hassan M Faidallah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

5.  3-Amino-1-(thio-phen-2-yl)-9,10-dihydro-phenanthrene-2,4-dicarbonitrile.

Authors:  Abdulrahman O Al-Youbi; Abdullah M Asiri; Hassan M Faidallah; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
  5 in total
  1 in total

1.  An efficient approach to the synthesis of highly congested 9,10-dihydrophenanthrene-2,4-dicarbonitriles and their biological evaluation as antimicrobial agents.

Authors:  Hassan M Faidallah; Khalid M A Al-Shaikh; Tariq R Sobahi; Khalid A Khan; Abdullah M Asiri
Journal:  Molecules       Date:  2013-12-16       Impact factor: 4.411

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.