Literature DB >> 22589889

(2E)-2-[(2H-1,3-Benzodioxol-5-yl)methyl-idene]-2,3-dihydro-1H-inden-1-one.

Abdullah M Asiri, Hassan M Faidallah, Khulud F Al-Nemari, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title compound, C(17)H(12)O(3), each of the five-membered rings in the inden-1-one and 1,3-benzodioxole residues is almost planar (r.m.s. deviations = 0.041 and 0.033 Å, respectively). A small twist about the single bond linking the two residues is evident [the C-C-C-C torsion angle = 8.7 (4)°]. Supra-molecular zigzag layers propagating in the ac plane are formed in the crystal via C-H⋯O inter-actions. The layers are linked via π-π inter-actions between the five- and six-membered rings of 1,3-benzodioxole residues [centroid-centroid distance = 3.4977 (14) Å].

Entities:  

Year:  2012        PMID: 22589889      PMCID: PMC3343980          DOI: 10.1107/S1600536812009464

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related species, see: Vera-DiVaio et al. (2009 ▶). For related structures, see: Asiri et al. (2012a ▶,b ▶).

Experimental

Crystal data

C17H12O3 M = 264.27 Orthorhombic, a = 12.6102 (12) Å b = 7.3497 (10) Å c = 26.569 (4) Å V = 2462.5 (5) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.35 × 0.10 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.967, T max = 0.995 6424 measured reflections 2820 independent reflections 1697 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.136 S = 0.98 2820 reflections 181 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812009464/hb6667sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009464/hb6667Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009464/hb6667Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12O3F(000) = 1104
Mr = 264.27Dx = 1.426 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 930 reflections
a = 12.6102 (12) Åθ = 2.8–27.5°
b = 7.3497 (10) ŵ = 0.10 mm1
c = 26.569 (4) ÅT = 100 K
V = 2462.5 (5) Å3Prism, light-yellow
Z = 80.35 × 0.10 × 0.05 mm
Agilent SuperNova Dual diffractometer with an Atlas detector2820 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1697 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.057
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.2°
ω scanh = −16→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −9→6
Tmin = 0.967, Tmax = 0.995l = −34→22
6424 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0502P)2] where P = (Fo2 + 2Fc2)/3
2820 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.26 e Å3
xyzUiso*/Ueq
O10.92949 (12)0.5693 (2)0.65488 (6)0.0275 (4)
O20.61242 (12)0.2489 (2)0.41852 (5)0.0283 (4)
O30.75515 (12)0.1445 (2)0.37080 (6)0.0283 (4)
C10.83441 (19)0.5422 (3)0.64704 (8)0.0212 (5)
C20.74657 (18)0.5690 (3)0.68310 (8)0.0197 (5)
C30.75035 (19)0.6274 (3)0.73287 (8)0.0231 (5)
H30.81540.66470.74760.028*
C40.65715 (19)0.6298 (3)0.76036 (8)0.0267 (6)
H40.65780.67090.79430.032*
C50.5625 (2)0.5723 (3)0.73861 (9)0.0291 (6)
H50.49960.57110.75830.035*
C60.55825 (19)0.5165 (3)0.68870 (8)0.0263 (6)
H60.49310.47810.67420.032*
C70.65094 (18)0.5179 (3)0.66035 (8)0.0210 (5)
C80.66690 (17)0.4682 (3)0.60554 (8)0.0200 (5)
H8A0.63910.34490.59830.024*
H8B0.63140.55690.58310.024*
C90.78635 (18)0.4750 (3)0.59906 (8)0.0199 (5)
C100.84909 (18)0.4281 (3)0.56046 (8)0.0207 (5)
H100.92270.44450.56650.025*
C110.82372 (18)0.3562 (3)0.51066 (8)0.0194 (5)
C120.90839 (19)0.2975 (3)0.48054 (8)0.0254 (5)
H120.97850.30690.49340.030*
C130.89343 (19)0.2255 (3)0.43228 (8)0.0266 (5)
H130.95140.18700.41210.032*
C140.79071 (19)0.2135 (3)0.41575 (8)0.0221 (5)
C150.70630 (17)0.2729 (3)0.44464 (8)0.0197 (5)
C160.71892 (18)0.3447 (3)0.49167 (8)0.0210 (5)
H160.65990.38510.51090.025*
C170.64264 (19)0.1752 (4)0.37035 (8)0.0296 (6)
H17A0.60480.05930.36420.036*
H17B0.62390.26160.34320.036*
U11U22U33U12U13U23
O10.0173 (9)0.0395 (10)0.0256 (9)−0.0010 (7)−0.0025 (7)−0.0025 (8)
O20.0210 (9)0.0432 (11)0.0206 (8)−0.0023 (8)−0.0017 (7)−0.0073 (7)
O30.0210 (9)0.0422 (10)0.0217 (8)−0.0029 (8)0.0018 (7)−0.0092 (8)
C10.0204 (13)0.0226 (12)0.0206 (11)0.0005 (10)−0.0012 (10)0.0010 (9)
C20.0202 (12)0.0193 (11)0.0196 (11)0.0004 (10)0.0017 (10)0.0007 (9)
C30.0221 (13)0.0265 (12)0.0207 (11)−0.0010 (10)−0.0025 (10)0.0012 (10)
C40.0299 (14)0.0312 (13)0.0189 (11)0.0050 (11)0.0016 (11)−0.0016 (10)
C50.0233 (14)0.0379 (15)0.0261 (12)0.0057 (11)0.0056 (11)0.0000 (11)
C60.0205 (13)0.0352 (14)0.0231 (12)0.0021 (11)0.0006 (10)0.0018 (10)
C70.0195 (12)0.0203 (11)0.0230 (11)0.0021 (10)0.0002 (10)0.0009 (9)
C80.0183 (12)0.0218 (11)0.0200 (11)−0.0009 (10)0.0008 (10)−0.0004 (9)
C90.0186 (12)0.0214 (11)0.0199 (11)0.0002 (10)−0.0001 (10)0.0015 (9)
C100.0156 (12)0.0231 (12)0.0234 (11)−0.0021 (9)−0.0010 (10)0.0030 (10)
C110.0195 (12)0.0195 (11)0.0191 (10)−0.0012 (10)0.0013 (10)0.0026 (9)
C120.0177 (13)0.0333 (13)0.0251 (11)−0.0028 (10)0.0009 (10)0.0006 (10)
C130.0183 (13)0.0353 (13)0.0260 (12)−0.0006 (11)0.0052 (11)−0.0019 (10)
C140.0231 (13)0.0257 (12)0.0175 (10)−0.0013 (10)0.0038 (10)−0.0005 (10)
C150.0169 (12)0.0209 (11)0.0213 (11)−0.0027 (9)−0.0028 (10)0.0026 (9)
C160.0183 (12)0.0252 (12)0.0196 (11)−0.0017 (10)0.0029 (10)0.0024 (10)
C170.0248 (14)0.0421 (16)0.0218 (11)0.0053 (11)−0.0002 (11)−0.0046 (11)
O1—C11.233 (3)C8—C91.517 (3)
O2—C151.384 (3)C8—H8A0.9900
O2—C171.441 (3)C8—H8B0.9900
O3—C141.373 (3)C9—C101.340 (3)
O3—C171.437 (3)C10—C111.460 (3)
C1—C21.478 (3)C10—H100.9500
C1—C91.496 (3)C11—C121.402 (3)
C2—C31.391 (3)C11—C161.417 (3)
C2—C71.400 (3)C12—C131.400 (3)
C3—C41.384 (3)C12—H120.9500
C3—H30.9500C13—C141.371 (3)
C4—C51.392 (3)C13—H130.9500
C4—H40.9500C14—C151.383 (3)
C5—C61.389 (3)C15—C161.366 (3)
C5—H50.9500C16—H160.9500
C6—C71.391 (3)C17—H17A0.9900
C6—H60.9500C17—H17B0.9900
C7—C81.515 (3)
C15—O2—C17105.49 (17)C10—C9—C8131.7 (2)
C14—O3—C17105.78 (16)C1—C9—C8108.44 (18)
O1—C1—C2126.7 (2)C9—C10—C11131.1 (2)
O1—C1—C9126.3 (2)C9—C10—H10114.5
C2—C1—C9107.04 (19)C11—C10—H10114.5
C3—C2—C7121.5 (2)C12—C11—C16119.2 (2)
C3—C2—C1129.2 (2)C12—C11—C10117.5 (2)
C7—C2—C1109.26 (19)C16—C11—C10123.3 (2)
C4—C3—C2118.5 (2)C13—C12—C11122.4 (2)
C4—C3—H3120.8C13—C12—H12118.8
C2—C3—H3120.8C11—C12—H12118.8
C3—C4—C5120.3 (2)C14—C13—C12116.4 (2)
C3—C4—H4119.8C14—C13—H13121.8
C5—C4—H4119.8C12—C13—H13121.8
C6—C5—C4121.3 (2)C13—C14—O3127.7 (2)
C6—C5—H5119.4C13—C14—C15121.9 (2)
C4—C5—H5119.4O3—C14—C15110.4 (2)
C7—C6—C5118.9 (2)C16—C15—C14122.7 (2)
C7—C6—H6120.6C16—C15—O2127.4 (2)
C5—C6—H6120.6C14—C15—O2109.86 (19)
C6—C7—C2119.5 (2)C15—C16—C11117.2 (2)
C6—C7—C8129.1 (2)C15—C16—H16121.4
C2—C7—C8111.42 (19)C11—C16—H16121.4
C9—C8—C7103.49 (17)O3—C17—O2108.22 (17)
C9—C8—H8A111.1O3—C17—H17A110.1
C7—C8—H8A111.1O2—C17—H17A110.1
C9—C8—H8B111.1O3—C17—H17B110.1
C7—C8—H8B111.1O2—C17—H17B110.1
H8A—C8—H8B109.0H17A—C17—H17B108.4
C10—C9—C1119.9 (2)
O1—C1—C2—C3−0.8 (4)C1—C9—C10—C11178.6 (2)
C9—C1—C2—C3179.0 (2)C8—C9—C10—C111.0 (4)
O1—C1—C2—C7−178.2 (2)C9—C10—C11—C12−171.8 (2)
C9—C1—C2—C71.6 (2)C9—C10—C11—C168.7 (4)
C7—C2—C3—C41.6 (3)C16—C11—C12—C13−0.7 (3)
C1—C2—C3—C4−175.5 (2)C10—C11—C12—C13179.7 (2)
C2—C3—C4—C51.0 (3)C11—C12—C13—C14−0.5 (3)
C3—C4—C5—C6−2.0 (4)C12—C13—C14—O3−178.3 (2)
C4—C5—C6—C70.3 (3)C12—C13—C14—C151.4 (3)
C5—C6—C7—C22.2 (3)C17—O3—C14—C13−175.9 (2)
C5—C6—C7—C8−178.5 (2)C17—O3—C14—C154.3 (2)
C3—C2—C7—C6−3.2 (3)C13—C14—C15—C16−1.1 (4)
C1—C2—C7—C6174.43 (19)O3—C14—C15—C16178.7 (2)
C3—C2—C7—C8177.4 (2)C13—C14—C15—O2178.5 (2)
C1—C2—C7—C8−5.0 (2)O3—C14—C15—O2−1.7 (3)
C6—C7—C8—C9−173.2 (2)C17—O2—C15—C16177.9 (2)
C2—C7—C8—C96.1 (2)C17—O2—C15—C14−1.7 (2)
O1—C1—C9—C103.9 (3)C14—C15—C16—C11−0.2 (3)
C2—C1—C9—C10−175.9 (2)O2—C15—C16—C11−179.78 (19)
O1—C1—C9—C8−177.9 (2)C12—C11—C16—C151.1 (3)
C2—C1—C9—C82.3 (2)C10—C11—C16—C15−179.4 (2)
C7—C8—C9—C10172.9 (2)C14—O3—C17—O2−5.3 (2)
C7—C8—C9—C1−4.9 (2)C15—O2—C17—O34.3 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···O1i0.952.473.290 (3)144
C17—H17A···O1ii0.992.463.302 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O1i0.952.473.290 (3)144
C17—H17A⋯O1ii0.992.463.302 (3)143

Symmetry codes: (i) ; (ii) .

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