Literature DB >> 22412633

(2E)-2-(4-Bromo-benzyl-idene)-2,3-di-hydro-1H-inden-1-one.

Abdullah M Asiri, Hassan M Faidallah, Khulud F Al-Nemari, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The title indan-1-one derivative, C(16)H(11)BrO, is planar, the r.m.s. deviation for all 18 non-H atoms being 0.071 Å. The configuration about the C=C bond [1.337 (5) Å] is E. In the crystal, supra-molecular layers in the ab plane are formed by C-H⋯O inter-actions, involving the bifurcated carbonyl O atom, as well as C-H⋯π inter-actions. The studied crystal was an inversion twin.

Entities:  

Year:  2012        PMID: 22412633      PMCID: PMC3295522          DOI: 10.1107/S1600536812006654

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the activity of related species for the treatment of Chagas disease, see: Vera-DiVaio et al. (2009 ▶).

Experimental

Crystal data

C16H11BrO M = 299.16 Monoclinic, a = 6.1359 (5) Å b = 4.7512 (4) Å c = 21.310 (3) Å β = 96.195 (9)° V = 617.61 (11) Å3 Z = 2 Mo Kα radiation μ = 3.31 mm−1 T = 100 K 0.20 × 0.10 × 0.05 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.798, T max = 1.000 5083 measured reflections 2705 independent reflections 2455 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.068 S = 0.99 2705 reflections 164 parameters 2 restraints H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.35 e Å−3 Absolute structure: Flack (1983 ▶), 1288 Friedel pairs Flack parameter: 0.343 (10) Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006654/bt5818sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006654/bt5818Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812006654/bt5818Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11BrOF(000) = 300
Mr = 299.16Dx = 1.609 Mg m3
Monoclinic, PnMo Kα radiation, λ = 0.71073 Å
Hall symbol: P -2yacCell parameters from 2365 reflections
a = 6.1359 (5) Åθ = 2.9–27.5°
b = 4.7512 (4) ŵ = 3.31 mm1
c = 21.310 (3) ÅT = 100 K
β = 96.195 (9)°Prism, orange
V = 617.61 (11) Å30.20 × 0.10 × 0.05 mm
Z = 2
Agilent SuperNova Dual diffractometer with an Atlas detector2705 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2455 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.039
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 3.4°
ω scanh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −6→6
Tmin = 0.798, Tmax = 1.000l = −27→27
5083 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.068w = 1/[σ2(Fo2) + (0.0265P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
2705 reflectionsΔρmax = 0.70 e Å3
164 parametersΔρmin = −0.35 e Å3
2 restraintsAbsolute structure: Flack (1983), 1288 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.343 (10)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.50001 (3)0.38435 (6)0.489989 (19)0.02212 (10)
O1−0.1668 (4)1.6578 (5)0.71975 (12)0.0216 (6)
C10.3820 (7)1.3644 (7)0.74899 (19)0.0166 (9)
H1A0.41441.17440.76670.020*
H1B0.49931.41960.72300.020*
C20.3597 (7)1.5761 (7)0.80064 (19)0.0161 (9)
C30.5184 (7)1.6540 (7)0.84972 (18)0.0194 (8)
H30.65961.56950.85410.023*
C40.4630 (7)1.8602 (7)0.89226 (18)0.0235 (9)
H40.56771.91450.92620.028*
C50.2575 (7)1.9869 (8)0.88561 (19)0.0219 (9)
H50.22472.12830.91470.026*
C60.0998 (7)1.9098 (8)0.83714 (17)0.0198 (8)
H6−0.04121.99470.83280.024*
C70.1545 (6)1.7034 (7)0.79481 (17)0.0166 (8)
C80.0200 (7)1.5875 (8)0.73932 (19)0.0162 (9)
C90.1582 (6)1.3722 (7)0.71053 (19)0.0137 (8)
C100.0759 (6)1.2291 (7)0.65939 (17)0.0155 (8)
H10−0.07271.26940.64490.019*
C110.1822 (6)1.0181 (7)0.62235 (17)0.0147 (8)
C120.0596 (6)0.9077 (7)0.56840 (17)0.0184 (8)
H12−0.08770.96700.55810.022*
C130.1497 (6)0.7144 (8)0.53015 (17)0.0197 (9)
H130.06520.64040.49390.024*
C140.3645 (6)0.6305 (7)0.54539 (17)0.0168 (8)
C150.4890 (6)0.7281 (8)0.59864 (18)0.0184 (8)
H150.63550.66520.60880.022*
C160.3964 (6)0.9197 (7)0.63707 (17)0.0177 (8)
H160.48030.98560.67420.021*
U11U22U33U12U13U23
Br10.02551 (18)0.02170 (16)0.01955 (16)0.0011 (2)0.00433 (13)−0.0025 (2)
O10.0155 (14)0.0269 (14)0.0218 (14)0.0010 (11)−0.0003 (12)−0.0013 (11)
C10.020 (2)0.017 (2)0.0131 (19)0.0002 (16)0.0018 (18)0.0031 (15)
C20.022 (2)0.0155 (18)0.0107 (19)−0.0047 (16)−0.0006 (18)0.0059 (16)
C30.0197 (19)0.0189 (18)0.0184 (19)−0.0011 (16)−0.0036 (16)0.0032 (16)
C40.032 (2)0.022 (2)0.0157 (19)−0.0059 (17)−0.0009 (17)0.0035 (16)
C50.029 (2)0.0162 (19)0.021 (2)−0.0011 (17)0.0057 (18)0.0020 (17)
C60.022 (2)0.021 (2)0.018 (2)−0.0028 (17)0.0079 (16)0.0013 (16)
C70.020 (2)0.0139 (17)0.0160 (18)−0.0033 (15)0.0024 (16)0.0027 (15)
C80.018 (2)0.018 (2)0.0130 (19)−0.0058 (17)0.0037 (18)0.0039 (16)
C90.0134 (18)0.0120 (19)0.016 (2)−0.0036 (14)0.0034 (17)0.0046 (15)
C100.0146 (18)0.0200 (19)0.0122 (17)−0.0016 (15)0.0025 (15)0.0032 (16)
C110.019 (2)0.0118 (17)0.0138 (19)−0.0043 (15)0.0035 (16)0.0034 (15)
C120.0180 (19)0.0155 (18)0.0215 (19)−0.0006 (15)0.0010 (16)0.0050 (16)
C130.020 (2)0.0188 (19)0.0187 (19)−0.0022 (15)−0.0054 (17)0.0021 (15)
C140.023 (2)0.0132 (17)0.0157 (18)−0.0038 (15)0.0068 (16)0.0025 (14)
C150.0158 (19)0.0207 (18)0.0187 (18)0.0008 (15)0.0022 (16)0.0051 (16)
C160.020 (2)0.0183 (19)0.0149 (18)−0.0040 (16)0.0012 (15)0.0013 (16)
Br1—C141.914 (4)C7—C81.474 (5)
O1—C81.223 (5)C8—C91.501 (5)
C1—C21.508 (5)C9—C101.337 (5)
C1—C91.522 (5)C10—C111.471 (5)
C1—H1A0.9900C10—H100.9500
C1—H1B0.9900C11—C161.398 (5)
C2—C71.390 (5)C11—C121.406 (5)
C2—C31.400 (5)C12—C131.382 (5)
C3—C41.401 (5)C12—H120.9500
C3—H30.9500C13—C141.382 (5)
C4—C51.391 (6)C13—H130.9500
C4—H40.9500C14—C151.378 (5)
C5—C61.386 (5)C15—C161.387 (5)
C5—H50.9500C15—H150.9500
C6—C71.398 (5)C16—H160.9500
C6—H60.9500
C2—C1—C9103.2 (3)C7—C8—C9106.9 (3)
C2—C1—H1A111.1C10—C9—C8119.9 (4)
C9—C1—H1A111.1C10—C9—C1131.8 (4)
C2—C1—H1B111.1C8—C9—C1108.3 (3)
C9—C1—H1B111.1C9—C10—C11129.3 (3)
H1A—C1—H1B109.1C9—C10—H10115.3
C7—C2—C3120.1 (4)C11—C10—H10115.3
C7—C2—C1112.2 (3)C16—C11—C12117.8 (3)
C3—C2—C1127.7 (4)C16—C11—C10124.6 (3)
C2—C3—C4118.1 (4)C12—C11—C10117.6 (3)
C2—C3—H3121.0C13—C12—C11121.2 (4)
C4—C3—H3121.0C13—C12—H12119.4
C5—C4—C3121.2 (4)C11—C12—H12119.4
C5—C4—H4119.4C14—C13—C12119.0 (3)
C3—C4—H4119.4C14—C13—H13120.5
C6—C5—C4120.9 (4)C12—C13—H13120.5
C6—C5—H5119.5C15—C14—C13121.8 (3)
C4—C5—H5119.5C15—C14—Br1118.3 (3)
C5—C6—C7118.0 (4)C13—C14—Br1119.9 (3)
C5—C6—H6121.0C14—C15—C16118.8 (3)
C7—C6—H6121.0C14—C15—H15120.6
C2—C7—C6121.7 (3)C16—C15—H15120.6
C2—C7—C8109.4 (3)C15—C16—C11121.5 (3)
C6—C7—C8128.8 (4)C15—C16—H16119.3
O1—C8—C7126.5 (4)C11—C16—H16119.3
O1—C8—C9126.6 (4)
C9—C1—C2—C7−1.2 (4)O1—C8—C9—C1177.3 (4)
C9—C1—C2—C3−179.9 (4)C7—C8—C9—C1−1.2 (4)
C7—C2—C3—C40.4 (5)C2—C1—C9—C10−178.9 (4)
C1—C2—C3—C4179.0 (4)C2—C1—C9—C81.5 (4)
C2—C3—C4—C5−0.8 (5)C8—C9—C10—C11177.7 (4)
C3—C4—C5—C61.0 (6)C1—C9—C10—C11−1.9 (7)
C4—C5—C6—C7−0.7 (6)C9—C10—C11—C162.8 (6)
C3—C2—C7—C6−0.2 (6)C9—C10—C11—C12−177.2 (4)
C1—C2—C7—C6−178.9 (3)C16—C11—C12—C13−1.8 (5)
C3—C2—C7—C8179.3 (3)C10—C11—C12—C13178.2 (3)
C1—C2—C7—C80.5 (5)C11—C12—C13—C14−0.3 (5)
C5—C6—C7—C20.3 (5)C12—C13—C14—C151.9 (5)
C5—C6—C7—C8−179.0 (4)C12—C13—C14—Br1−175.5 (3)
C2—C7—C8—O1−178.1 (4)C13—C14—C15—C16−1.3 (5)
C6—C7—C8—O11.3 (7)Br1—C14—C15—C16176.2 (3)
C2—C7—C8—C90.4 (4)C14—C15—C16—C11−1.0 (5)
C6—C7—C8—C9179.9 (4)C12—C11—C16—C152.5 (5)
O1—C8—C9—C10−2.3 (6)C10—C11—C16—C15−177.5 (3)
C7—C8—C9—C10179.1 (3)
D—H···AD—HH···AD···AD—H···A
C1—H1b···O1i0.992.353.220 (5)146
C15—H15···O1ii0.952.543.171 (5)124
C1—H1A···Cg1iii0.992.613.479 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1b⋯O1i0.992.353.220 (5)146
C15—H15⋯O1ii0.952.543.171 (5)124
C1—H1ACg1iii0.992.613.479 (4)147

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  (2E)-2-(Furan-2-yl-methyl-idene)-2,3-dihydro-1H-inden-1-one.

Authors:  Abdullah M Asiri; Hassan M Faidallah; Khulud F Al-Nemari; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-14

2.  (2E)-2-[(2H-1,3-Benzodioxol-5-yl)methyl-idene]-2,3-dihydro-1H-inden-1-one.

Authors:  Abdullah M Asiri; Hassan M Faidallah; Khulud F Al-Nemari; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
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