Literature DB >> 22589792

Tetra-kis(μ-2-iodo-benzoato-κ(2)O:O')bis-[aqua-copper(II)].

Omür Aydın, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the centrosymmetric binuclear title complex, [Cu(2)(C(7)H(4)IO(2))(4)(H(2)O)(2)], the two Cu(II) ions [CuCu = 2.6009 (5) Å] are bridged by four 2-iodo-benzoate (IB) ligands. The four nearest O atoms around each Cu(II) ion form a distorted square-planar arrangement, the distorted square-pyramidal coordination being completed by the O atom of the water mol-ecule at a distance of 2.1525 (16) Å. The dihedral angle between the benzene ring and the carboxyl-ate group is 25.67 (13)° in one of the independent IB ligands and 6.44 (11)° in the other. The benzene rings of the two independent IB ligands are oriented at a dihedral angle of 86.61 (7)°. In the crystal, O-H⋯O inter-actions link the mol-ecules into a two-dimensional network. π-π contacts between the benzene rings [centroid-centroid distances = 3.810 (2) and 3.838 (2) Å] may further stabilize the structure.

Entities:  

Year:  2012        PMID: 22589792      PMCID: PMC3343818          DOI: 10.1107/S1600536812010367

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶). For N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Speier & Fulop (1989 ▶); Usubaliev et al. (1980 ▶); Hökelek et al. (1995 ▶, 2009a ▶,b ▶,c ▶, 2011 ▶); Necefoğlu et al. (2010a ▶,b ▶).

Experimental

Crystal data

[Cu2(C7H4IO2)4(H2O)2] M = 1151.14 Triclinic, a = 7.3563 (2) Å b = 10.7448 (3) Å c = 10.9066 (3) Å α = 83.167 (3)° β = 72.779 (2)° γ = 77.227 (2)° V = 801.73 (4) Å3 Z = 1 Mo Kα radiation μ = 5.23 mm−1 T = 100 K 0.39 × 0.36 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.150, T max = 0.285 14335 measured reflections 3987 independent reflections 3818 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.045 S = 1.16 3987 reflections 207 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.61 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010367/bq2345sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010367/bq2345Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2(C7H4IO2)4(H2O)2]Z = 1
Mr = 1151.14F(000) = 538
Triclinic, P1Dx = 2.384 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3563 (2) ÅCell parameters from 9932 reflections
b = 10.7448 (3) Åθ = 2.7–28.4°
c = 10.9066 (3) ŵ = 5.23 mm1
α = 83.167 (3)°T = 100 K
β = 72.779 (2)°Block, green
γ = 77.227 (2)°0.39 × 0.36 × 0.24 mm
V = 801.73 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3987 independent reflections
Radiation source: fine-focus sealed tube3818 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.150, Tmax = 0.285k = −14→14
14335 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.045H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0134P)2 + 0.9745P] where P = (Fo2 + 2Fc2)/3
3987 reflections(Δ/σ)max = 0.002
207 parametersΔρmax = 0.61 e Å3
2 restraintsΔρmin = −0.66 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.36263 (2)0.882863 (16)0.200310 (15)0.01953 (5)
I2−0.20180 (2)0.701971 (15)0.777993 (14)0.01579 (5)
Cu10.65575 (4)0.46820 (2)0.53900 (2)0.00769 (6)
O10.6886 (2)0.64727 (16)0.49086 (16)0.0152 (3)
O20.4156 (2)0.70018 (16)0.43065 (16)0.0153 (3)
O30.4755 (2)0.52102 (17)0.70398 (15)0.0151 (3)
O40.7945 (2)0.43067 (18)0.35988 (15)0.0171 (4)
O50.9024 (2)0.41164 (17)0.61507 (15)0.0137 (3)
H511.010 (3)0.375 (3)0.573 (3)0.031 (9)*
H520.920 (6)0.462 (3)0.660 (3)0.050 (12)*
C10.5690 (3)0.7241 (2)0.4403 (2)0.0111 (4)
C20.6219 (3)0.8508 (2)0.3878 (2)0.0118 (4)
C30.5596 (3)0.9249 (2)0.2873 (2)0.0137 (4)
C40.6304 (4)1.0353 (2)0.2372 (3)0.0204 (5)
H40.59321.08280.16630.024*
C50.7553 (4)1.0769 (3)0.2899 (3)0.0247 (6)
H50.80221.15290.25580.030*
C60.8112 (4)1.0070 (2)0.3925 (3)0.0222 (5)
H60.89271.03670.43100.027*
C70.7483 (3)0.8947 (2)0.4384 (2)0.0162 (5)
H70.79180.84560.50630.019*
C80.2958 (3)0.5622 (2)0.7233 (2)0.0102 (4)
C90.1865 (3)0.6078 (2)0.8544 (2)0.0095 (4)
C10−0.0093 (3)0.6684 (2)0.8928 (2)0.0115 (4)
C11−0.0913 (3)0.7150 (2)1.0144 (2)0.0170 (5)
H11−0.22330.75761.03860.020*
C120.0184 (4)0.6997 (3)1.1009 (2)0.0184 (5)
H12−0.03850.73171.18410.022*
C130.2108 (4)0.6377 (2)1.0661 (2)0.0160 (5)
H130.28600.62611.12550.019*
C140.2927 (3)0.5930 (2)0.9441 (2)0.0124 (4)
H140.42510.55100.92060.015*
U11U22U33U12U13U23
I10.01733 (8)0.02241 (9)0.01989 (8)−0.00265 (6)−0.00902 (6)0.00232 (6)
I20.01043 (8)0.01989 (8)0.01694 (7)0.00135 (6)−0.00594 (6)−0.00335 (6)
Cu10.00592 (12)0.00946 (13)0.00725 (11)−0.00149 (9)−0.00117 (9)−0.00054 (9)
O10.0129 (8)0.0116 (8)0.0231 (8)−0.0056 (6)−0.0079 (7)0.0048 (6)
O20.0119 (8)0.0115 (8)0.0249 (8)−0.0044 (6)−0.0082 (7)0.0022 (6)
O30.0092 (8)0.0237 (9)0.0101 (7)0.0023 (7)−0.0018 (6)−0.0046 (6)
O40.0096 (8)0.0315 (10)0.0090 (7)−0.0007 (7)−0.0018 (6)−0.0048 (7)
O50.0084 (8)0.0194 (9)0.0134 (7)−0.0012 (7)−0.0037 (6)−0.0024 (6)
C10.0111 (10)0.0123 (10)0.0082 (9)−0.0025 (8)0.0004 (8)−0.0016 (8)
C20.0088 (10)0.0101 (10)0.0146 (10)−0.0011 (8)−0.0006 (8)−0.0009 (8)
C30.0089 (10)0.0131 (11)0.0166 (10)−0.0003 (8)−0.0009 (8)−0.0010 (8)
C40.0148 (12)0.0171 (12)0.0252 (12)−0.0012 (10)−0.0040 (10)0.0069 (10)
C50.0194 (13)0.0147 (12)0.0396 (15)−0.0089 (10)−0.0066 (11)0.0069 (11)
C60.0179 (12)0.0147 (12)0.0365 (14)−0.0071 (10)−0.0095 (11)0.0011 (10)
C70.0152 (11)0.0136 (11)0.0197 (11)−0.0039 (9)−0.0048 (9)0.0007 (9)
C80.0118 (10)0.0091 (10)0.0097 (9)−0.0040 (8)−0.0021 (8)0.0002 (7)
C90.0092 (10)0.0087 (10)0.0095 (9)−0.0029 (8)−0.0004 (8)0.0001 (7)
C100.0099 (10)0.0119 (10)0.0129 (10)−0.0016 (8)−0.0042 (8)0.0001 (8)
C110.0115 (11)0.0206 (12)0.0146 (11)0.0017 (9)0.0003 (9)−0.0041 (9)
C120.0168 (12)0.0238 (13)0.0124 (10)−0.0005 (10)−0.0012 (9)−0.0068 (9)
C130.0161 (12)0.0197 (12)0.0124 (10)−0.0026 (9)−0.0041 (9)−0.0027 (9)
C140.0104 (10)0.0134 (11)0.0129 (10)−0.0006 (8)−0.0036 (8)−0.0006 (8)
I1—C32.100 (2)C4—H40.9500
I2—C102.102 (2)C5—C41.388 (4)
Cu1—Cu1i2.6009 (5)C5—H50.9500
Cu1—O11.9814 (16)C6—C51.386 (4)
Cu1—O2i1.9577 (16)C6—H60.9500
Cu1—O31.9533 (16)C7—C61.374 (3)
Cu1—O41.9610 (16)C7—H70.9500
Cu1—O52.1525 (16)C8—O4i1.260 (3)
O1—C11.272 (3)C8—C91.498 (3)
O2—Cu1i1.9577 (16)C9—C101.403 (3)
O2—C11.247 (3)C9—C141.397 (3)
O3—C81.260 (3)C10—C111.388 (3)
O4—C8i1.260 (3)C11—C121.387 (3)
O5—H510.828 (18)C11—H110.9500
O5—H520.828 (19)C12—C131.384 (3)
C2—C11.499 (3)C12—H120.9500
C2—C71.397 (3)C13—C141.384 (3)
C3—C21.404 (3)C13—H130.9500
C3—C41.389 (3)C14—H140.9500
O1—Cu1—Cu1i86.36 (5)C5—C4—C3120.5 (2)
O1—Cu1—O595.68 (7)C5—C4—H4119.8
O2i—Cu1—Cu1i82.79 (5)C4—C5—H5120.1
O2i—Cu1—O1168.98 (7)C6—C5—C4119.8 (2)
O2i—Cu1—O490.09 (8)C6—C5—H5120.1
O2i—Cu1—O595.26 (7)C5—C6—H6120.1
O3—Cu1—Cu1i83.11 (5)C7—C6—C5119.7 (2)
O3—Cu1—O189.93 (7)C7—C6—H6120.1
O3—Cu1—O2i90.68 (7)C2—C7—H7119.1
O3—Cu1—O4168.90 (7)C6—C7—C2121.7 (2)
O3—Cu1—O593.88 (6)C6—C7—H7119.1
O4—Cu1—Cu1i86.00 (5)O3—C8—O4i124.6 (2)
O4—Cu1—O187.22 (8)O3—C8—C9116.33 (18)
O4—Cu1—O597.08 (7)O4i—C8—C9119.06 (19)
O5—Cu1—Cu1i176.38 (5)C10—C9—C8125.79 (19)
C1—O1—Cu1119.86 (14)C14—C9—C8116.50 (19)
C1—O2—Cu1i125.63 (15)C14—C9—C10117.66 (19)
C8—O3—Cu1124.96 (14)C9—C10—I2125.52 (16)
C8i—O4—Cu1121.09 (15)C11—C10—I2113.88 (16)
Cu1—O5—H51123 (2)C11—C10—C9120.6 (2)
Cu1—O5—H52117 (3)C10—C11—H11119.8
H51—O5—H52108 (4)C12—C11—C10120.3 (2)
O1—C1—C2116.23 (19)C12—C11—H11119.8
O2—C1—O1124.6 (2)C11—C12—H12120.0
O2—C1—C2119.2 (2)C13—C12—C11120.1 (2)
C3—C2—C1124.2 (2)C13—C12—H12120.0
C7—C2—C1117.6 (2)C12—C13—H13120.3
C7—C2—C3118.1 (2)C14—C13—C12119.4 (2)
C2—C3—I1125.24 (17)C14—C13—H13120.3
C4—C3—I1114.73 (17)C9—C14—H14119.0
C4—C3—C2120.0 (2)C13—C14—C9121.9 (2)
C3—C4—H4119.8C13—C14—H14119.0
Cu1i—Cu1—O1—C1−2.22 (16)C3—C2—C7—C60.1 (4)
O2i—Cu1—O1—C17.9 (5)I1—C3—C2—C15.4 (3)
O3—Cu1—O1—C1−85.32 (17)I1—C3—C2—C7−177.62 (17)
O4—Cu1—O1—C183.95 (17)C4—C3—C2—C1−174.1 (2)
O5—Cu1—O1—C1−179.21 (16)C4—C3—C2—C72.9 (3)
Cu1i—Cu1—O3—C80.27 (18)I1—C3—C4—C5177.2 (2)
O1—Cu1—O3—C886.62 (19)C2—C3—C4—C5−3.3 (4)
O2i—Cu1—O3—C8−82.38 (19)C6—C5—C4—C30.6 (4)
O4—Cu1—O3—C811.6 (5)C7—C6—C5—C42.3 (4)
O5—Cu1—O3—C8−177.70 (18)C2—C7—C6—C5−2.7 (4)
Cu1i—Cu1—O4—C8i−4.82 (18)O3—C8—C9—C10173.4 (2)
O1—Cu1—O4—C8i−91.37 (18)O3—C8—C9—C14−3.7 (3)
O2i—Cu1—O4—C8i77.94 (18)O4i—C8—C9—C10−5.2 (3)
O3—Cu1—O4—C8i−16.0 (5)O4i—C8—C9—C14177.7 (2)
O5—Cu1—O4—C8i173.25 (18)C8—C9—C10—C11−175.2 (2)
Cu1—O1—C1—O28.5 (3)C8—C9—C10—I23.2 (3)
Cu1—O1—C1—C2−170.57 (14)C14—C9—C10—I2−179.69 (16)
Cu1i—O2—C1—O1−11.8 (3)C14—C9—C10—C111.9 (3)
Cu1i—O2—C1—C2167.28 (15)C8—C9—C14—C13176.4 (2)
Cu1—O3—C8—O4i3.5 (3)C10—C9—C14—C13−1.0 (3)
Cu1—O3—C8—C9−175.06 (14)I2—C10—C11—C12179.93 (19)
C3—C2—C1—O1153.2 (2)C9—C10—C11—C12−1.5 (4)
C3—C2—C1—O2−25.9 (3)C10—C11—C12—C130.1 (4)
C7—C2—C1—O1−23.8 (3)C11—C12—C13—C140.8 (4)
C7—C2—C1—O2157.1 (2)C12—C13—C14—C9−0.4 (4)
C1—C2—C7—C6177.3 (2)
D—H···AD—HH···AD···AD—H···A
O5—H51···O1ii0.83 (3)2.09 (3)2.839 (2)152 (3)
O5—H52···O4ii0.83 (3)2.56 (4)3.171 (2)132 (3)
Table 1

Selected bond lengths (Å)

Cu1—O11.9814 (16)
Cu1—O2i1.9577 (16)
Cu1—O31.9533 (16)
Cu1—O41.9610 (16)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H51⋯O1ii0.83 (3)2.09 (3)2.839 (2)152 (3)
O5—H52⋯O4ii0.83 (3)2.56 (4)3.171 (2)132 (3)

Symmetry code: (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Tetra-kis[μ-4-(dimethyl-amino)benzoato-κO:O']bis-[(N,N-diethyl-nicotinamide-κN)zinc(II)].

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

4.  Tetra-kis[μ-4-(diethyl-amino)benzoato-κO:O']bis-[(N,N-diethyl-nicotinamide-κN)zinc(II)].

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

5.  Tetra-kis(μ-4-methyl-benzoato-κO:O')bis-[(isonicotinamide-κN)copper(II)].

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Hakan Dal; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

6.  Tetra-kis[μ-4-(methyl-amino)-benzoato-κO:O']bis-[(N,N-diethyl-nicotinamide-N)zinc(II)] dihydrate.

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

7.  Tetra-kis(μ-4-methyl-benzoato-κO:O')bis-[(N,N-diethyl-nicotinamide-κN)zinc(II)].

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Hakan Dal; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

8.  Tetra-kis[μ-4-(diethyl-amino)-benzoato-κO:O']bis-[(N,N-diethyl-nicotinamide-κN)cobalt(II)].

Authors:  Tuncer Hökelek; Ertuğrul Gazi Sağlam; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Tetra-kis(μ-3-chloro-benzoato-κ(2) O:O')bis-[(N,N-di-ethyl-nicotinamide-κN (1))copper(II)].

Authors:  Nihat Bozkurt; Tuncay Tunç; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-03
  1 in total

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