Literature DB >> 22588998

Reference genes for measuring mRNA expression.

Jitesh Dundas1, Maurice Ling.   

Abstract

The aim of this review is to find answers to some of the questions surrounding reference genes and their reliability for quantitative experiments. Reference genes are assumed to be at a constant expression level, over a range of conditions such as temperature. These genes, such as GADPH and beta-actin, are used extensively for gene expression studies using techniques like quantitative PCR. There have been several studies carried out on identifying reference genes. However, a lot of evidence indicates issues to the general suitability of these genes. Recent studies had shown that different factors, including the environment and methods, play an important role in changing the expression levels of the reference genes. Thus, we conclude that there is no reference gene that can deemed suitable for all the experimental conditions. In addition, we believe that every experiment will require the scientific evaluation and selection of the best candidate gene for use as a reference gene to obtain reliable scientific results.

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Year:  2012        PMID: 22588998     DOI: 10.1007/s12064-012-0152-5

Source DB:  PubMed          Journal:  Theory Biosci        ISSN: 1431-7613            Impact factor:   1.919


  70 in total

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2.  Serial analysis of gene expression.

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Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data.

Authors:  Sinara Artico; Sarah M Nardeli; Osmundo Brilhante; Maria Fátima Grossi-de-Sa; Marcio Alves-Ferreira
Journal:  BMC Plant Biol       Date:  2010-03-21       Impact factor: 4.215

4.  Signal Peptidase Complex Subunit 1 and Hydroxyacyl-CoA Dehydrogenase Beta Subunit Are Suitable Reference Genes in Human Lungs.

Authors:  Issac H K Too; Maurice H T Ling
Journal:  ISRN Bioinform       Date:  2011-12-28

5.  Validation of reference genes for quantitative expression analysis by real-time RT-PCR in Saccharomyces cerevisiae.

Authors:  Marie-Ange Teste; Manon Duquenne; Jean M François; Jean-Luc Parrou
Journal:  BMC Mol Biol       Date:  2009-10-30       Impact factor: 2.946

6.  Glucan Biosynthesis Protein G Is a Suitable Reference Gene in Escherichia coli K-12.

Authors:  Sean S J Heng; Oliver Y W Chan; Bryan M H Keng; Maurice H T Ling
Journal:  ISRN Microbiol       Date:  2011-11-23

7.  Selection of housekeeping genes for gene expression studies in larvae from flatfish using real-time PCR.

Authors:  Carlos Infante; Makoto P Matsuoka; Esther Asensio; José Pedro Cañavate; Michael Reith; Manuel Manchado
Journal:  BMC Mol Biol       Date:  2008-03-06       Impact factor: 2.946

8.  Selecting control genes for RT-QPCR using public microarray data.

Authors:  Vlad Popovici; Darlene R Goldstein; Janine Antonov; Rolf Jaggi; Mauro Delorenzi; Pratyaksha Wirapati
Journal:  BMC Bioinformatics       Date:  2009-02-02       Impact factor: 3.169

9.  Validation of putative reference genes for gene expression studies in human hepatocellular carcinoma using real-time quantitative RT-PCR.

Authors:  Vito R Cicinnati; Qingli Shen; Georgios C Sotiropoulos; Arnold Radtke; Guido Gerken; Susanne Beckebaum
Journal:  BMC Cancer       Date:  2008-11-27       Impact factor: 4.430

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

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Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

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  18 in total

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2.  Tumor profiling of co-regulated receptor tyrosine kinase and chemoresistant genes reveal different targeting options for lung and gastroesophageal cancers.

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Journal:  Am J Transl Res       Date:  2016-12-15       Impact factor: 4.060

3.  Selection of suitable reference genes for expression analysis in human glioma using RT-qPCR.

Authors:  Susanne Grube; Tatjana Göttig; Diana Freitag; Christian Ewald; Rolf Kalff; Jan Walter
Journal:  J Neurooncol       Date:  2015-04-11       Impact factor: 4.130

Review 4.  Plant reference genes for development and stress response studies.

Authors:  Joyous T Joseph; Najya Jabeen Poolakkalody; Jasmine M Shah
Journal:  J Biosci       Date:  2018-03       Impact factor: 1.826

5.  Monogenic Diabetes and Integrated Stress Response Genes Display Altered Gene Expression in Type 1 Diabetes.

Authors:  Helmut Hiller; Dawn E Beachy; Joseph J Lebowitz; Stefanie Engler; Justin R Mason; Douglas R Miller; Irina Kusmarteva; Laura M Jacobsen; Amanda L Posgai; Habibeh Khoshbouei; Richard A Oram; Desmond A Schatz; Andrew T Hattersley; Bernd Bodenmiller; Mark A Atkinson; Harry S Nick; Clive H Wasserfall
Journal:  Diabetes       Date:  2021-05-25       Impact factor: 9.337

6.  Transcriptome Analysis of Spermophilus lateralis and Spermophilus tridecemlineatus Liver Does Not Suggest the Presence of Spermophilus-Liver-Specific Reference Genes.

Authors:  Bryan M H Keng; Oliver Y W Chan; Sean S J Heng; Maurice H T Ling
Journal:  ISRN Bioinform       Date:  2013-05-25

7.  Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae).

Authors:  Nanjing Ji; Ling Li; Lingxiao Lin; Senjie Lin
Journal:  PLoS One       Date:  2015-07-02       Impact factor: 3.240

8.  Transcriptome Reveals Roles of Lignin-Modifying Enzymes and Abscisic Acid in the Symbiosis of Mycena and Gastrodia elata.

Authors:  Li-Ying Ren; Heng Zhao; Xiao-Ling Liu; Tong-Kai Zong; Min Qiao; Shu-Yan Liu; Xiao-Yong Liu
Journal:  Int J Mol Sci       Date:  2021-06-18       Impact factor: 5.923

9.  Selection of suitable reference genes for normalization of quantitative real-time PCR in cartilage tissue injury and repair in rabbits.

Authors:  Xiao-Xiang Peng; Rong-Lan Zhao; Wei Song; Hai-Rong Chu; Meng Li; Shu-Ya Song; Guang-Zhou Li; Dong-Chun Liang
Journal:  Int J Mol Sci       Date:  2012-11-06       Impact factor: 5.923

10.  Reference genes for reverse transcription quantitative PCR in canine brain tissue.

Authors:  Quirine E M Stassen; Frank M Riemers; Hannah Reijmerink; Peter A J Leegwater; Louis C Penning
Journal:  BMC Res Notes       Date:  2015-12-09
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