Literature DB >> 22585065

Mechanisms and consequences of widespread random monoallelic expression.

Andrew Chess1.   

Abstract

Although random monoallelic expression has been known for decades to affect genes on the X chromosome in female placental mammals, until a few years ago it was thought that there were few autosomal genes that were regulated in this manner. New tools for assaying gene expression genome-wide are now revealing that there are perhaps more genes that are subject to random monoallelic expression on mammalian autosomes than there are on the X chromosome and that these expression properties are achieved by diverse molecular mechanisms. This mode of expression has the potential to have an impact on natural selection and on the evolution of gene families.

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Year:  2012        PMID: 22585065     DOI: 10.1038/nrg3239

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  49 in total

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Journal:  Nat Genet       Date:  2001-04       Impact factor: 38.330

Review 2.  Genomic imprinting: parental influence on the genome.

Authors:  W Reik; J Walter
Journal:  Nat Rev Genet       Date:  2001-01       Impact factor: 53.242

3.  Asynchronous replication of imprinted genes is established in the gametes and maintained during development.

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Journal:  Nature       Date:  1999-10-28       Impact factor: 49.962

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Journal:  Nature       Date:  1993-07-29       Impact factor: 49.962

6.  Mutually exclusive expression of odorant receptor transgenes.

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Journal:  Nat Neurosci       Date:  2000-07       Impact factor: 24.884

7.  Extensive sequence-influenced DNA methylation polymorphism in the human genome.

Authors:  Asaf Hellman; Andrew Chess
Journal:  Epigenetics Chromatin       Date:  2010-05-24       Impact factor: 4.954

8.  Mice with a "monoclonal nose": perturbations in an olfactory map impair odor discrimination.

Authors:  Alexander Fleischmann; Benjamin M Shykind; Dara L Sosulski; Kevin M Franks; Meredith E Glinka; Dan Feng Mei; Yonghua Sun; Jennifer Kirkland; Monica Mendelsohn; Mark W Albers; Richard Axel
Journal:  Neuron       Date:  2008-12-26       Impact factor: 17.173

9.  Odorant receptor gene choice is reset by nuclear transfer from mouse olfactory sensory neurons.

Authors:  Jinsong Li; Tomohiro Ishii; Paul Feinstein; Peter Mombaerts
Journal:  Nature       Date:  2004-03-25       Impact factor: 49.962

10.  Allelic exclusion of Ly49-family genes encoding class I MHC-specific receptors on NK cells.

Authors:  W Held; J Roland; D H Raulet
Journal:  Nature       Date:  1995-07-27       Impact factor: 49.962

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  66 in total

Review 1.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

Review 2.  Weird mammals provide insights into the evolution of mammalian sex chromosomes and dosage compensation.

Authors:  Jennifer A Marshall Graves
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

Review 3.  Evolution of vertebrate sex chromosomes and dosage compensation.

Authors:  Jennifer A Marshall Graves
Journal:  Nat Rev Genet       Date:  2015-11-30       Impact factor: 53.242

4.  Reliable identification of genomic variants from RNA-seq data.

Authors:  Robert Piskol; Gokul Ramaswami; Jin Billy Li
Journal:  Am J Hum Genet       Date:  2013-09-26       Impact factor: 11.025

Review 5.  Mammalian viviparity: a complex niche in the evolution of genomic imprinting.

Authors:  E B Keverne
Journal:  Heredity (Edinb)       Date:  2014-02-26       Impact factor: 3.821

6.  The landscape of genomic imprinting across diverse adult human tissues.

Authors:  Yael Baran; Meena Subramaniam; Anne Biton; Taru Tukiainen; Emily K Tsang; Manuel A Rivas; Matti Pirinen; Maria Gutierrez-Arcelus; Kevin S Smith; Kim R Kukurba; Rui Zhang; Celeste Eng; Dara G Torgerson; Cydney Urbanek; Jin Billy Li; Jose R Rodriguez-Santana; Esteban G Burchard; Max A Seibold; Daniel G MacArthur; Stephen B Montgomery; Noah A Zaitlen; Tuuli Lappalainen
Journal:  Genome Res       Date:  2015-05-07       Impact factor: 9.043

Review 7.  The human placental methylome.

Authors:  Wendy P Robinson; E Magda Price
Journal:  Cold Spring Harb Perspect Med       Date:  2015-02-26       Impact factor: 6.915

8.  Significant abundance of cis configurations of coding variants in diploid human genomes.

Authors:  Margret R Hoehe; Ralf Herwig; Qing Mao; Brock A Peters; Radoje Drmanac; George M Church; Thomas Huebsch
Journal:  Nucleic Acids Res       Date:  2019-04-08       Impact factor: 16.971

9.  Random monoallelic gene expression increases upon embryonic stem cell differentiation.

Authors:  Mélanie A Eckersley-Maslin; David Thybert; Jan H Bergmann; John C Marioni; Paul Flicek; David L Spector
Journal:  Dev Cell       Date:  2014-02-24       Impact factor: 12.270

10.  GABRA2 Alcohol Dependence Risk Allele is Associated with Reduced Expression of Chromosome 4p12 GABAA Subunit Genes in Human Neural Cultures.

Authors:  Richard Lieberman; Henry R Kranzler; Pujan Joshi; Dong-Guk Shin; Jonathan Covault
Journal:  Alcohol Clin Exp Res       Date:  2015-08-06       Impact factor: 3.455

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