Literature DB >> 22582381

Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water.

Paul Barbier1, Armel Houel, Valentin Loux, Julie Poulain, Jean-François Bernardet, Marie Touchon, Eric Duchaud.   

Abstract

We report here the complete annotated genome sequence of Flavobacterium indicum CIP 109464(T) (= GPTSA100-9(T)), isolated from warm spring water in Assam, India. The genome sequence of F. indicum revealed a number of interesting features and genes in relation to its environmental lifestyle.

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Year:  2012        PMID： 22582381      PMCID： PMC3370609          DOI： 10.1128/JB.00420-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  A molecular phylogenetic survey of sea-ice microbial communities (SIMCO).

Authors:  M V. Brown; J P. Bowman
Journal:  FEMS Microbiol Ecol       Date:  2001-05       Impact factor: 4.194

2.  Flavobacterium johnsoniae as a model organism for characterizing biopolymer utilization in oligotrophic freshwater environments.

Authors:  Eveline L W Sack; Paul W J J van der Wielen; Dick van der Kooij
Journal:  Appl Environ Microbiol       Date:  2011-07-29       Impact factor: 4.792

3.  Complete genome sequence of the fish pathogen Flavobacterium branchiophilum.

Authors:  Marie Touchon; Paul Barbier; Jean-François Bernardet; Valentin Loux; Benoit Vacherie; Valérie Barbe; Eduardo P C Rocha; Eric Duchaud
Journal:  Appl Environ Microbiol       Date:  2011-09-16       Impact factor: 4.792

4.  Flavobacterium indicum sp. nov., isolated from warm spring water in Assam, India.

Authors:  P Saha; T Chakrabarti
Journal:  Int J Syst Evol Microbiol       Date:  2006-11       Impact factor: 2.747

Review 5.  The CRISPR system: small RNA-guided defense in bacteria and archaea.

Authors:  Fedor V Karginov; Gregory J Hannon
Journal:  Mol Cell       Date:  2010-01-15       Impact factor: 17.970

6.  Novel features of the polysaccharide-digesting gliding bacterium Flavobacterium johnsoniae as revealed by genome sequence analysis.

Authors:  Mark J McBride; Gary Xie; Eric C Martens; Alla Lapidus; Bernard Henrissat; Ryan G Rhodes; Eugene Goltsman; Wei Wang; Jian Xu; David W Hunnicutt; Andrew M Staroscik; Timothy R Hoover; Yi-Qiang Cheng; Jennifer L Stein
Journal:  Appl Environ Microbiol       Date:  2009-08-28       Impact factor: 4.792

Review 7.  Cytophaga-flavobacterium gliding motility.

Authors:  Mark J McBride
Journal:  J Mol Microbiol Biotechnol       Date:  2004

8.  A Bacteroides thetaiotaomicron outer membrane protein that is essential for utilization of maltooligosaccharides and starch.

Authors:  A R Reeves; J N D'Elia; J Frias; A A Salyers
Journal:  J Bacteriol       Date:  1996-02       Impact factor: 3.490

9.  AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system.

Authors:  K Bryson; V Loux; R Bossy; P Nicolas; S Chaillou; M van de Guchte; S Penaud; E Maguin; M Hoebeke; P Bessières; J-F Gibrat
Journal:  Nucleic Acids Res       Date:  2006-07-19       Impact factor: 16.971

10.  Optical mapping as a routine tool for bacterial genome sequence finishing.

Authors:  Phil Latreille; Stacie Norton; Barry S Goldman; John Henkhaus; Nancy Miller; Brad Barbazuk; Helge B Bode; Creg Darby; Zijin Du; Steve Forst; Sophie Gaudriault; Brad Goodner; Heidi Goodrich-Blair; Steven Slater
Journal:  BMC Genomics       Date:  2007-09-14       Impact factor: 3.969
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  5 in total

1.  Detection and quantification of Flavobacterium psychrophilum in water and fish tissue samples by quantitative real time PCR.

Authors:  Nicole Strepparava; Thomas Wahli; Helmut Segner; Orlando Petrini
Journal:  BMC Microbiol       Date:  2014-04-26       Impact factor: 3.605

2.  The Emerging Fish Pathogen Flavobacterium spartansii Isolated from Chinook Salmon: Comparative Genome Analysis and Molecular Manipulation.

Authors:  Shicheng Chen; Jochen Blom; Thomas P Loch; Mohamed Faisal; Edward D Walker
Journal:  Front Microbiol       Date:  2017-11-30       Impact factor: 5.640

3.  Comparative Genomics and Transcriptional Analysis of Flavobacterium columnare Strain ATCC 49512.

Authors:  Hasan C Tekedar; Attila Karsi; Joseph S Reddy; Seong W Nho; Safak Kalindamar; Mark L Lawrence
Journal:  Front Microbiol       Date:  2017-04-19       Impact factor: 5.640

4.  Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism.

Authors:  Max Kolton; Noa Sela; Yigal Elad; Eddie Cytryn
Journal:  PLoS One       Date:  2013-09-26       Impact factor: 3.240

5.  High quality draft genomic sequence of Flavobacterium enshiense DK69(T) and comparison among Flavobacterium genomes.

Authors:  Zhipeng Zeng; Chong Chen; Hailun Du; Gejiao Wang; Mingshun Li
Journal:  Stand Genomic Sci       Date:  2015-11-10
  5 in total

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