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Literature DB >> 22580363

Welcome to the plasmidome.

Abstract

This month's Genome Watch reviews a recent paper that used a metagenomics approach to characterize the plasmid content of bovine rumen samples.

Entities: Species

Mesh：

Year: 2012 PMID： 22580363 DOI： 10.1038/nrmicro2804

Source DB: PubMed Journal: Nat Rev Microbiol ISSN： 1740-1526 Impact factor: 60.633

4 in total

1. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.

Authors: Matthias Hess; Alexander Sczyrba; Rob Egan; Tae-Wan Kim; Harshal Chokhawala; Gary Schroth; Shujun Luo; Douglas S Clark; Feng Chen; Tao Zhang; Roderick I Mackie; Len A Pennacchio; Susannah G Tringe; Axel Visel; Tanja Woyke; Zhong Wang; Edward M Rubin
Journal: Science Date: 2011-01-28 Impact factor: 47.728

2. Insights into the bovine rumen plasmidome.

Authors: Aya Brown Kav; Goor Sasson; Elie Jami; Adi Doron-Faigenboim; Itai Benhar; Itzhak Mizrahi
Journal: Proc Natl Acad Sci U S A Date: 2012-03-19 Impact factor: 11.205

3. Functional metagenomic profiling of nine biomes.

Authors: Elizabeth A Dinsdale; Robert A Edwards; Dana Hall; Florent Angly; Mya Breitbart; Jennifer M Brulc; Mike Furlan; Christelle Desnues; Matthew Haynes; Linlin Li; Lauren McDaniel; Mary Ann Moran; Karen E Nelson; Christina Nilsson; Robert Olson; John Paul; Beltran Rodriguez Brito; Yijun Ruan; Brandon K Swan; Rick Stevens; David L Valentine; Rebecca Vega Thurber; Linda Wegley; Bryan A White; Forest Rohwer
Journal: Nature Date: 2008-03-12 Impact factor: 49.962

4. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.

Authors: Jennifer M Brulc; Dionysios A Antonopoulos; Margret E Berg Miller; Melissa K Wilson; Anthony C Yannarell; Elizabeth A Dinsdale; Robert E Edwards; Edward D Frank; Joanne B Emerson; Pirjo Wacklin; Pedro M Coutinho; Bernard Henrissat; Karen E Nelson; Bryan A White
Journal: Proc Natl Acad Sci U S A Date: 2009-01-30 Impact factor: 11.205

4 in total

8 in total

Review 8. Bringing them together: plasmid pMV158 rolling circle replication and conjugation under an evolutionary perspective.

Authors: Fabián Lorenzo-Díaz; Cris Fernández-López; M Pilar Garcillán-Barcia; Manuel Espinosa
Journal: Plasmid Date: 2014-06-02 Impact factor: 3.466

8 in total

Welcome to the plasmidome.

1. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.

2. Insights into the bovine rumen plasmidome.

3. Functional metagenomic profiling of nine biomes.

4. Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases.

1. The parA Region of Broad-Host-Range PromA Plasmids Is a Carrier of Mobile Genes.

2. Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer.

Review 3. Strategies and approaches in plasmidome studies-uncovering plasmid diversity disregarding of linear elements?

4. An improved method for including upper size range plasmids in metamobilomes.

5. Crosstalk between vertical and horizontal gene transfer: plasmid replication control by a conjugative relaxase.

6. The human microbiome as a reservoir of antimicrobial resistance.

Review 7. Metagenomics and Bioinformatics in Microbial Ecology: Current Status and Beyond.

Review 8. Bringing them together: plasmid pMV158 rolling circle replication and conjugation under an evolutionary perspective.