Literature DB >> 22579883

Towards the physical basis of how intrinsic disorder mediates protein function.

Jianhan Chen1.   

Abstract

Intrinsically disordered proteins (IDPs) are an important class of functional proteins that is highly prevalent in biology and has broad association with human diseases. In contrast to structured proteins, free IDPs exist as heterogeneous and dynamical conformational ensembles under physiological conditions. Many concepts have been discussed on how such intrinsic disorder may provide crucial functional advantages, particularly in cellular signaling and regulation. Establishing the physical basis of these proposed phenomena requires not only detailed characterization of the disordered conformational ensembles, but also mechanistic understanding of the roles of various ensemble properties in IDP interaction and regulation. Here, we review the experimental and computational approaches that may be integrated to address many important challenges of establishing a "structural" basis of IDP function, and discuss some of the key emerging ideas on how the conformational ensembles of IDPs may mediate function, especially in coupled binding and folding interactions.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22579883     DOI: 10.1016/j.abb.2012.04.024

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  29 in total

1.  Atomistic Glimpse of the Orderly Chaos of One Protein.

Authors:  Jianhan Chen
Journal:  Biophys J       Date:  2015-10-20       Impact factor: 4.033

2.  Dynamics of the BH3-Only Protein Binding Interface of Bcl-xL.

Authors:  Xiaorong Liu; Alex Beugelsdijk; Jianhan Chen
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

3.  Multiscaled exploration of coupled folding and binding of an intrinsically disordered molecular recognition element in measles virus nucleoprotein.

Authors:  Yong Wang; Xiakun Chu; Sonia Longhi; Philippe Roche; Wei Han; Erkang Wang; Jin Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

4.  CD44 receptor unfolding enhances binding by freeing basic amino acids to contact carbohydrate ligand.

Authors:  Amanda J Favreau; Christina E Faller; Olgun Guvench
Journal:  Biophys J       Date:  2013-09-03       Impact factor: 4.033

5.  HyRes: a coarse-grained model for multi-scale enhanced sampling of disordered protein conformations.

Authors:  Xiaorong Liu; Jianhan Chen
Journal:  Phys Chem Chem Phys       Date:  2017-12-13       Impact factor: 3.676

6.  Chaperone activation by unfolding.

Authors:  Linda Foit; Jenny S George; Bin W Zhang; Charles L Brooks; James C A Bardwell
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

Review 7.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

8.  Effects of phosphorylation on the structure and backbone dynamics of the intrinsically disordered connexin43 C-terminal domain.

Authors:  Rosslyn Grosely; Jennifer L Kopanic; Sarah Nabors; Fabien Kieken; Gaëlle Spagnol; Mona Al-Mugotir; Sydney Zach; Paul L Sorgen
Journal:  J Biol Chem       Date:  2013-07-04       Impact factor: 5.157

9.  Residual Structure Accelerates Binding of Intrinsically Disordered ACTR by Promoting Efficient Folding upon Encounter.

Authors:  Xiaorong Liu; Jianlin Chen; Jianhan Chen
Journal:  J Mol Biol       Date:  2018-12-07       Impact factor: 5.469

10.  Enhanced Sampling of Intrinsic Structural Heterogeneity of the BH3-Only Protein Binding Interface of Bcl-xL.

Authors:  Xiaorong Liu; Zhiguang Jia; Jianhan Chen
Journal:  J Phys Chem B       Date:  2017-09-27       Impact factor: 2.991

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