Literature DB >> 22579287

Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization.

Yibing Shan1, Michael P Eastwood, Xuewu Zhang, Eric T Kim, Anton Arkhipov, Ron O Dror, John Jumper, John Kuriyan, David E Shaw.   

Abstract

The mutation and overexpression of the epidermal growth factor receptor (EGFR) are associated with the development of a variety of cancers, making this prototypical dimerization-activated receptor tyrosine kinase a prominent target of cancer drugs. Using long-timescale molecular dynamics simulations, we find that the N lobe dimerization interface of the wild-type EGFR kinase domain is intrinsically disordered and that it becomes ordered only upon dimerization. Our simulations suggest, moreover, that some cancer-linked mutations distal to the dimerization interface, particularly the widespread L834R mutation (also referred to as L858R), facilitate EGFR dimerization by suppressing this local disorder. Corroborating these findings, our biophysical experiments and kinase enzymatic assays indicate that the L834R mutation causes abnormally high activity primarily by promoting EGFR dimerization rather than by allowing activation without dimerization. We also find that phosphorylation of EGFR kinase domain at Tyr845 may suppress the intrinsic disorder, suggesting a molecular mechanism for autonomous EGFR signaling.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 22579287     DOI: 10.1016/j.cell.2012.02.063

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  140 in total

Review 1.  Catalytic mechanisms and regulation of protein kinases.

Authors:  Zhihong Wang; Philip A Cole
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Allosteric activation of apicomplexan calcium-dependent protein kinases.

Authors:  Jessica R Ingram; Kevin E Knockenhauer; Benedikt M Markus; Joseph Mandelbaum; Alexander Ramek; Yibing Shan; David E Shaw; Thomas U Schwartz; Hidde L Ploegh; Sebastian Lourido
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-24       Impact factor: 11.205

3.  Dynamic architecture of a protein kinase.

Authors:  Christopher L McClendon; Alexandr P Kornev; Michael K Gilson; Susan S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-15       Impact factor: 11.205

4.  Effects of oncogenic mutations on the conformational free-energy landscape of EGFR kinase.

Authors:  Ludovico Sutto; Francesco Luigi Gervasio
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

5.  EGFR lung cancer mutants get specialized.

Authors:  Peter Littlefield; Natalia Jura
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-10       Impact factor: 11.205

6.  RETRACTED: An ATP-competitive inhibitor modulates the allosteric function of the HER3 pseudokinase.

Authors:  Peter Littlefield; Mark M Moasser; Natalia Jura
Journal:  Chem Biol       Date:  2014-03-20

7.  Cholesterol modulates the dimer interface of the β₂-adrenergic receptor via cholesterol occupancy sites.

Authors:  Xavier Prasanna; Amitabha Chattopadhyay; Durba Sengupta
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

8.  SEEKR: Simulation Enabled Estimation of Kinetic Rates, A Computational Tool to Estimate Molecular Kinetics and Its Application to Trypsin-Benzamidine Binding.

Authors:  Lane W Votapka; Benjamin R Jagger; Alexandra L Heyneman; Rommie E Amaro
Journal:  J Phys Chem B       Date:  2017-03-03       Impact factor: 2.991

9.  Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation.

Authors:  Alexander S Moffett; Kyle W Bender; Steven C Huber; Diwakar Shukla
Journal:  Biophys J       Date:  2017-12-05       Impact factor: 4.033

10.  Basic Amino Acids Within the Juxtamembrane Domain of the Epidermal Growth Factor Receptor Regulate Receptor Dimerization and Auto-phosphorylation.

Authors:  Jordan D Mohr; Alice Wagenknecht-Wiesner; David A Holowka; Barbara A Baird
Journal:  Protein J       Date:  2020-11-19       Impact factor: 2.371

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