Literature DB >> 22578318

Small RNAs in development - insights from plants.

Xuemei Chen1.   

Abstract

microRNAs (miRNAs) and small interfering RNAs (siRNAs), which constitute two major classes of endogenous small RNAs in plants, impact a multitude of developmental and physiological processes by imparting sequence specificity to gene and genome regulation. Although lacking the third major class of small RNAs found in animals, Piwi-interacting RNAs (piRNAs), plants have expanded their repertoire of endogenous siRNAs, some of which fulfill similar molecular and developmental functions as piRNAs in animals. Research on plant miRNAs and siRNAs has contributed invaluable insights into small RNA biology, thanks to the highly conserved molecular logic behind the biogenesis and actions of small RNAs. Here, I review progress in the plant small RNA field in the past two years, with an emphasis on recent findings related to plant development. I do not recount the numerous developmental processes regulated by small RNAs; instead, I focus on major principles that have been derived from recent studies and draw parallels, when applicable, between plants and animals.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22578318      PMCID: PMC3419802          DOI: 10.1016/j.gde.2012.04.004

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  71 in total

1.  A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.

Authors:  Ken-Ichi Nonomura; Akane Morohoshi; Mutsuko Nakano; Mitsugu Eiguchi; Akio Miyao; Hirohiko Hirochika; Nori Kurata
Journal:  Plant Cell       Date:  2007-08-03       Impact factor: 11.277

2.  Two small regulatory RNAs establish opposing fates of a developmental axis.

Authors:  Fabio T S Nogueira; Shahinez Madi; Daniel H Chitwood; Michelle T Juarez; Marja C P Timmermans
Journal:  Genes Dev       Date:  2007-04-01       Impact factor: 11.361

3.  Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation.

Authors:  Taiowa A Montgomery; Miya D Howell; Josh T Cuperus; Dawei Li; Jesse E Hansen; Amanda L Alexander; Elisabeth J Chapman; Noah Fahlgren; Edwards Allen; James C Carrington
Journal:  Cell       Date:  2008-03-13       Impact factor: 41.582

4.  Widespread translational inhibition by plant miRNAs and siRNAs.

Authors:  Peter Brodersen; Lali Sakvarelidze-Achard; Marianne Bruun-Rasmussen; Patrice Dunoyer; Yoshiharu Y Yamamoto; Leslie Sieburth; Olivier Voinnet
Journal:  Science       Date:  2008-05-15       Impact factor: 47.728

5.  Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis.

Authors:  Christine Hunter; Matthew R Willmann; Gang Wu; Manabu Yoshikawa; María de la Luz Gutiérrez-Nava; Scott R Poethig
Journal:  Development       Date:  2006-07-03       Impact factor: 6.868

6.  Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction.

Authors:  Miin-Feng Wu; Qing Tian; Jason W Reed
Journal:  Development       Date:  2006-10-04       Impact factor: 6.868

7.  A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.

Authors:  Ramya Rajagopalan; Hervé Vaucheret; Jerry Trejo; David P Bartel
Journal:  Genes Dev       Date:  2006-12-15       Impact factor: 11.361

8.  DNA methylation of retrotransposon genes is regulated by Piwi family members MILI and MIWI2 in murine fetal testes.

Authors:  Satomi Kuramochi-Miyagawa; Toshiaki Watanabe; Kengo Gotoh; Yasushi Totoki; Atsushi Toyoda; Masahito Ikawa; Noriko Asada; Kanako Kojima; Yuka Yamaguchi; Takashi W Ijiri; Kenichiro Hata; En Li; Yoichi Matsuda; Tohru Kimura; Masaru Okabe; Yoshiyuki Sakaki; Hiroyuki Sasaki; Toru Nakano
Journal:  Genes Dev       Date:  2008-04-01       Impact factor: 11.361

9.  Developmentally regulated piRNA clusters implicate MILI in transposon control.

Authors:  Alexei A Aravin; Ravi Sachidanandam; Angelique Girard; Katalin Fejes-Toth; Gregory J Hannon
Journal:  Science       Date:  2007-04-19       Impact factor: 47.728

10.  AGO1-miR173 complex initiates phased siRNA formation in plants.

Authors:  Taiowa A Montgomery; Seong Jeon Yoo; Noah Fahlgren; Sunny D Gilbert; Miya D Howell; Christopher M Sullivan; Amanda Alexander; Goretti Nguyen; Edwards Allen; Ji Hoon Ahn; James C Carrington
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-09       Impact factor: 11.205

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  63 in total

Review 1.  Role of chromatin in water stress responses in plants.

Authors:  Soon-Ki Han; Doris Wagner
Journal:  J Exp Bot       Date:  2013-12-03       Impact factor: 6.992

2.  MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors.

Authors:  Patricia Baldrich; Sonia Campo; Ming-Tsung Wu; Tze-Tze Liu; Yue-Ie Caroline Hsing; Blanca San Segundo
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

3.  Whole mount in situ localization of miRNAs and target mRNA transcripts in plants.

Authors:  Vibhav Gautam; Archita Singh; Swati Verma; Sharmila Singh; Sourav Chatterjee; Ananda K Sarkar
Journal:  3 Biotech       Date:  2019-04-29       Impact factor: 2.406

4.  Balanced activity of microRNA166/165 and its target transcripts from the class III homeodomain-leucine zipper family regulates root growth in Arabidopsis thaliana.

Authors:  Archita Singh; Sharmila Singh; Kishore C S Panigrahi; Ralf Reski; Ananda K Sarkar
Journal:  Plant Cell Rep       Date:  2014-02-07       Impact factor: 4.570

Review 5.  Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation.

Authors:  Steven R Eichten; Robert J Schmitz; Nathan M Springer
Journal:  Plant Physiol       Date:  2014-05-28       Impact factor: 8.340

6.  Multiple rice microRNAs are involved in immunity against the blast fungus Magnaporthe oryzae.

Authors:  Yan Li; Yuan-Gen Lu; Yi Shi; Liang Wu; Yong-Ju Xu; Fu Huang; Xiao-Yi Guo; Yong Zhang; Jing Fan; Ji-Qun Zhao; Hong-Yu Zhang; Pei-Zhou Xu; Jian-Min Zhou; Xian-Jun Wu; Ping-Rong Wang; Wen-Ming Wang
Journal:  Plant Physiol       Date:  2013-12-13       Impact factor: 8.340

7.  Growth dynamics of the Arabidopsis fruit is mediated by cell expansion.

Authors:  Juan-José Ripoll; Mingyuan Zhu; Stephanie Brocke; Cindy T Hon; Martin F Yanofsky; Arezki Boudaoud; Adrienne H K Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-22       Impact factor: 11.205

8.  MicroRNA166 Modulates Cadmium Tolerance and Accumulation in Rice.

Authors:  Yanfei Ding; Shaohua Gong; Yi Wang; Feijuan Wang; Hexigeduleng Bao; Junwei Sun; Chong Cai; Keke Yi; Zhixiang Chen; Cheng Zhu
Journal:  Plant Physiol       Date:  2018-06-20       Impact factor: 8.340

9.  Cross-kingdom inhibition of breast cancer growth by plant miR159.

Authors:  Andrew R Chin; Miranda Y Fong; George Somlo; Jun Wu; Piotr Swiderski; Xiwei Wu; Shizhen Emily Wang
Journal:  Cell Res       Date:  2016-01-22       Impact factor: 25.617

Review 10.  RNA Quality Control as a Key to Suppressing RNA Silencing of Endogenous Genes in Plants.

Authors:  Lin Liu; Xuemei Chen
Journal:  Mol Plant       Date:  2016-03-30       Impact factor: 13.164

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