| Literature DB >> 22567355 |
Ulku Ozbey1, Hüseyin Yüce, Mustafa Namli, Tamer Elkiran.
Abstract
Objective. The reduced incidence of cancer observed in schizophrenia patients may be related to differences in genetic background. It has been suggested that genetic predisposition towards schizophrenia is associated with reduced vulnerability to lung cancer, and p53 gene is one of the candidate genes. In our study, we aimed to investigate polymorphisms in the BstUI in exon 4 and MspI in intron 6 restriction sites of the p53 gene in Turkish schizophrenia patients, lung cancer patients, and controls. Material and Methods. Allele and genotype incidence of these polymorphisms with their haplotype combinations were studied in 100 Turkish lung cancer and schizophrenia patients and 100 controls without malignant and schizophrenia diseases. The genotype characteristics were determined by PCR-based RFLP method using DNA extracted from peripheral blood. Results. For the BstUI and MspI polymorphism, there were found significant differences in the genotype and allele frequencies between schizophrenia and lung cancer patients with control groups (P < .01). The analysis based on haplotype frequencies showed the presence of BstUI-MspI 2-1 haplotype in cancer patients (12%) in contrast to the absence of this haplotype in schizophrenia and controls. Only in lung cancer patients we found both significant decrease of A1 allele of the p53 codon 72 (OR 0.23, 95% CI 0.9-0.58) and A1/A1 homozygous genotype (P < .0001, OR 0.19). Conclusion. The results of this study suggest a protective effect of A1 allele against lung cancer, and the p53 MspI polymorphism may modify the susceptibility to lung cancer as a single factor rather than in combination with BstUI polymorphism.Entities:
Year: 2011 PMID: 22567355 PMCID: PMC3335481 DOI: 10.4061/2011/483851
Source DB: PubMed Journal: Genet Res Int ISSN: 2090-3162
Figure 1Agaros gel electrophoresis of the p53 BstUI and the p53 MspI PCR products digested with BstUI and MspI restriction enzymes. (a) A1 allele does not create BstUI restriction site. The PCR product has 318 bp. Presence of CGCC sequence in A2 allele creates BstUI restriction site which leads to two fragments 182 bp and 136 bp. (b) A1 allele does not create MspI restriction site. The PCR product has 240 bp. Presence of CCGG sequence in A2 allele creates MspI restriction site which leads to two fragments 164 bp and 76 bp. Lanes 1, 6: 100 bp DNA ladder; lanes 2, 7: 1-1 homozygotes; lanes 3, 8: 1-2 heterozygotes; lanes 4, 9: 2-2 homozygotes; lane 5: no DNA in PCR reaction (blank).
General characteristics of the control group, lung cancer patients, and schizophrenia patients.
| Characteristic | Lung cancer patients | Schizophrenia patients | Control group |
|---|---|---|---|
| Males | 90 | 54 | 59 |
| Females | 10 | 46 | 41 |
| Age, mean (SD), years | 60.7 ± 10.8 | 37.2 ± 10.0 | 50.3 ± 17.4 |
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| Smoking status |
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| Smokers | 88 | 94 | 43 |
| Nonsmokers | 12 | 6 | 57 |
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| Alcohol consumption |
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| Drinking | 34 | 30 | 12 |
| Nonalcoholic | 66 | 70 | 88 |
BstUI and MspI polymorphisms of the p53 gene genotype frequencies in Turkish schizophrenia and lung cancer patients and control groups.
| Genotype distribution | ||||||||
|---|---|---|---|---|---|---|---|---|
| A1-A1 | A2-A2 | A1-A2 | ||||||
| BstUI |
| % |
| % |
| % |
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| Schizophrenia ( | 38 | 38.0 | 43 | 43.0 | 19 | 19.0 | 9.620 | <.01 |
| Lung cancer ( | 5 | 5.0 | 87 | 87.0 | 8 | 8.0 | 129.740 | <.001 |
| Controls ( | 22 | 22.0 | 33 | 33.0 | 45 | 45.0 | 7.940 | <.05 |
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| MspI | ||||||||
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| Schizophrenia ( | 0 | 0.0 | 46 | 46.0 | 54 | 54.0 | .640 | .424 |
| Lung cancer ( | 13 | 13.0 | 43 | 43.0 | 44 | 44.0 | 18.620 | <.001 |
| Controls ( | 0 | 0.0 | 33 | 33.0 | 67 | 67.0 | 11.660 | <.001 |
aDifferences in genotype and allele frequencies; P < .01 from Fisher's exact test.
BstUI and MspI polymorphisms of the p53 gene allele frequencies in Turkish schizophrenia patients, lung cancer patients, and control groups.
| Allele frequency | |||||
|---|---|---|---|---|---|
| A1 | A2 | ||||
| BstUI | Schizophrenia ( | 0.48 | 0.53 |
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| Lung cancer ( | 0.09 | 0.91 | |||
| Controls ( | 0.45 | 0.56 | |||
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| MspI | Schizophrenia ( | 0.27 | 0.73 |
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| Lung cancer ( | 0.35 | 0.65 | |||
| Controls ( | 0.34 | 0.67 | |||
aDifferences in genotype and allele frequencies; P < .01 from Fisher's exact test.
The differences of allele frequencies estimated according to histological types of lung cancer patients.
| Allele BstUI | A1 | A2 | |
|---|---|---|---|
| Group | Histological types | ||
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| Lung cancer | Large cell carcinoma | 34.3 | 22.4 |
| Small cell carcinoma | 34.3 | 49.4 | |
| Epidermoid carcinoma | 41.5 | 59.2 | |
| Adenocarcinoma | 40.0 | 18.9 | |
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| Allele MspI | |||
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| Lung cancer | Large cell carcinoma | 17.9 | 15.2 |
| Small cell carcinoma | 41.2 | 52.8 | |
| Epidermoid carcinoma | 67.5 | 54.1 | |
| Adenocarcinoma | 23.3 | 27.9 | |
Estimated haplotype frequencies of the BstUI and MspI polymorphisms of the p53 gene.
| Estimated haplotype frequency | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| A1-A1 | A2-A2 | A1-A2 | A2-A1 | |||||||
| Haplotype BstUI-MspI |
| % |
| % |
| % |
| % |
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| Schizophrenia | 0 |
| 61 |
| 39 |
| 0 |
| 4.840 | <.05 |
| Lung cancer | 0 |
| 82 |
| 6 |
| 12 |
| 107.120 | <.001 |
| Control | 0 |
| 79 |
| 21 |
| 0 |
| 33.960 | <.001 |
aSignificant pairwise association and linkage disequilibrium between the two polymorphisms; P < .001.
Estimated pairwise haplotype frequencies between the BstUI and MspI polymorphisms in lung cancer patients and controls.
| Estimated haplotype frequency | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A1-A1 | A2-A2 | A1-A2 | A2-A1 | Total | ||||||||
| Haplotype |
| % |
| % | % |
| % |
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| Schizophrenia | Male | 0 | 0.0 | 33 | 61.1 | 21 | 38.9 | 0 | 0.0 | 54 | .339 | .844 |
| Female | 0 | 0.0 | 28 | 60.9 | 18 | 39.1 | 0 | 0.0 | 46 | |||
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| Lung cancer | Male | 0 | 0.0 | 74 | 82.2 | 5 | 5.6 | 11 | 12.2 | 90 | .001 | .98 |
| Female | 0 | 0.0 | 8 | 80.0 | 1 | 10.0 | 1 | 10.0 | 10 | |||
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| Control | Male | 0 | 0.0 | 48 | 81.4 | 11 | 18.6 | 0 | 0.0 | 59 | .481 | .488 |
| Female | 0 | 0.0 | 31 | 75.6 | 10 | 24.4 | 0 | 0.0 | 41 | |||
a Cases versus control.
(a) Risk of lung cancer from BstUI genotype with reference to histological types.
| Histological types | p53-BstUI type | |||||||
|---|---|---|---|---|---|---|---|---|
| A1/A1 | A1/A2 | A2/A2 | Total | |||||
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| % |
| % |
| % |
| % | |
| Large cell carcinoma | 1 | 20.0 | 2 | 28.6 | 6 | 8.1 | 9 | 10.5 |
| Small cell carcinoma. | 1 | 20.0 | 2 | 28.6 | 26 | 35.1 | 29 | 33.7 |
| Epidermoid carcinoma | 1 | 20.0 | 3 | 42.9 | 28 | 37.8 | 32 | 37.2 |
| Adenocarcinoma | 2 | 40.0 | 0 | 0.0 | 14 | 18.9 | 16 | 18.6 |
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| Total | 5 | 100.0 | 7 | 100.0 | 74 | 100.0 | 86 | 100.0 |
X 2: 6.400, df:6, P = .380.
(b) Risk of lung cancer from MspI genotype with reference to histological types.
| Histological types | p53-MspI type | |||||||
|---|---|---|---|---|---|---|---|---|
| A1/A1 | A1/A2 | A2/A2 | Total | |||||
|
| % |
| % |
| % |
| % | |
| Large cell carcinoma | 1 | 12.5 | 4 | 10.8 | 4 | 9.8 | 9 | 10.5 |
| Small cell carcinoma | 2 | 25.0 | 12 | 32.4 | 15 | 36.6 | 29 | 33.7 |
| Epidermoid carcinoma | 4 | 50.0 | 13 | 35.1 | 15 | 36.6 | 32 | 37.2 |
| Adenocarcinoma | 1 | 12.5 | 8 | 21.6 | 7 | 17.1 | 16 | 18.6 |
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| Total | 8 | 100.0 | 37 | 100.0 | 41 | 100.0 | 86 | 100.0 |
X 2: 1.146, df:6, P = .979.