Literature DB >> 22564051

Simple model of hydrophobic hydration.

Miha Lukšič1, Tomaz Urbic, Barbara Hribar-Lee, Ken A Dill.   

Abstract

Water is an unusual liquid in its solvation properties. Here, we model the process of transferring a nonpolar solute into water. Our goal was to capture the physical balance between water's hydrogen bonding and van der Waals interactions in a model that is simple enough to be nearly analytical and not heavily computational. We develop a 2-dimensional Mercedes-Benz-like model of water with which we compute the free energy, enthalpy, entropy, and the heat capacity of transfer as a function of temperature, pressure, and solute size. As validation, we find that this model gives the same trends as Monte Carlo simulations of the underlying 2D model and gives qualitative agreement with experiments. The advantages of this model are that it gives simple insights and that computational time is negligible. It may provide a useful starting point for developing more efficient and more realistic 3D models of aqueous solvation.

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Year:  2012        PMID: 22564051      PMCID: PMC5234790          DOI: 10.1021/jp300743a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  21 in total

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6.  Water's hydrogen bonds in the hydrophobic effect: a simple model.

Authors:  Huafeng Xu; Ken A Dill
Journal:  J Phys Chem B       Date:  2005-12-15       Impact factor: 2.991

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  7 in total

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Journal:  J Chem Phys       Date:  2013-09-21       Impact factor: 3.488

2.  Analytical model for three-dimensional Mercedes-Benz water molecules.

Authors:  T Urbic
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-06-25

Review 3.  The expanded genetic alphabet.

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Journal:  Angew Chem Int Ed Engl       Date:  2015-08-25       Impact factor: 15.336

4.  Analytical theory of the hydrophobic effect of solutes in water.

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Journal:  Phys Rev E       Date:  2017-09-01       Impact factor: 2.529

5.  Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water.

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Journal:  J Phys Chem B       Date:  2021-02-04       Impact factor: 2.991

6.  How Water's Properties Are Encoded in Its Molecular Structure and Energies.

Authors:  Emiliano Brini; Christopher J Fennell; Marivi Fernandez-Serra; Barbara Hribar-Lee; Miha Lukšič; Ken A Dill
Journal:  Chem Rev       Date:  2017-09-26       Impact factor: 60.622

7.  On the Dependence of Prion and Amyloid Structure on the Folding Environment.

Authors:  Irena Roterman; Katarzyna Stapor; Krzysztof Gądek; Tomasz Gubała; Piotr Nowakowski; Piotr Fabian; Leszek Konieczny
Journal:  Int J Mol Sci       Date:  2021-12-16       Impact factor: 5.923

  7 in total

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