Literature DB >> 22562226

Letter to the editor: Characterization of a Grapevine leafroll-associated virus 3 from India showing incongruence in its phylogeny.

Sandeep Kumar, Virendra K Baranwal, Priyanka Singh, Rakesh K Jain, Sanjay D Sawant, Sanjay K Singh.   

Abstract

Survey conducted during 2010-2011 in the vineyards of Nashik and Pune regions of India revealed the association of an Ampelovirus antigenically related to Grapevine leafroll-associated virus 3 (GLRaV-3) with seven cultivars of grapevine. Upon sequencing of the coat protein (CP) and partial heat shock protein 70 homologue (HSP70h) genes of GLRaV-3 present in the cultivar Cabernet Souvignon showed distinct grouping behaviour. It clustered in group 2 and group 1 on the basis of CP and HSP70h sequences, respectively. Incongruent clustering pattern observed on the basis of two genomic regions suggest that GLRaV-3 is a distinct isolate from India.

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Year:  2012        PMID： 22562226     DOI： 10.1007/s11262-012-0752-7

Source DB:  PubMed          Journal:  Virus Genes        ISSN： 0920-8569            Impact factor:   2.332


  11 in total

1.  The family Closteroviridae revised.

Authors:  G P Martelli; A A Agranovsky; M Bar-Joseph; D Boscia; T Candresse; R H A Coutts; V V Dolja; B W Falk; D Gonsalves; W Jelkmann; A V Karasev; A Minafra; S Namba; H J Vetten; G C Wisler; N Yoshikawa
Journal:  Arch Virol       Date:  2002-10       Impact factor: 2.574

2.  Complete nucleotide sequence and genome organization of Grapevine leafroll-associated virus 3, type member of the genus Ampelovirus.

Authors:  Kai-Shu Ling; Hai-Ying Zhu; Dennis Gonsalves
Journal:  J Gen Virol       Date:  2004-07       Impact factor: 3.891

3.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

4.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

5.  Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses.

Authors:  M F Clark; A N Adams
Journal:  J Gen Virol       Date:  1977-03       Impact factor: 3.891

6.  Hypervariable genes in Grapevine leafroll associated virus 1.

Authors:  A Little; C F Fazeli; M A Rezaian
Journal:  Virus Res       Date:  2001-11-28       Impact factor: 3.303

7.  Three genetic grapevine leafroll-associated virus 3 variants identified from South African vineyards show high variability in their 5'UTR.

Authors:  A E C Jooste; H J Maree; D U Bellstedt; D E Goszczynski; G Pietersen; J T Burger
Journal:  Arch Virol       Date:  2010-09-10       Impact factor: 2.574

8.  Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard.

Authors:  Beatrix Coetzee; Michael-John Freeborough; Hans J Maree; Jean-Marc Celton; D Jasper G Rees; Johan T Burger
Journal:  Virology       Date:  2010-02-20       Impact factor: 3.616

9.  Five phylogenetic groups identified in the coat protein gene of grapevine leafroll-associated virus 3 obtained from Portuguese grapevine varieties.

Authors:  Paulo Gouveia; Margarida Teixeira Santos; José Eduardo Eiras-Dias; Gustavo Nolasco
Journal:  Arch Virol       Date:  2010-12-12       Impact factor: 2.574

10.  Genetic variability and population structure of Grapevine leafroll-associated virus 3 isolates.

Authors:  Camilla Turturo; Pasquale Saldarelli; Dong Yafeng; Michele Digiaro; Angelantonio Minafra; Vito Savino; G P Martelli
Journal:  J Gen Virol       Date:  2005-01       Impact factor: 3.891
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  3 in total

1.  Evidence of Grapevine leafroll associated virus-1-3, Grapevine fleck virus and Grapevine virus B Occurring in Himachal Pradesh, India.

Authors:  Surender Kumar; Lakhmir Singh; Luca Ferretti; Marina Barba; Aijaz A Zaidi; Vipin Hallan
Journal:  Indian J Virol       Date:  2013-02-15

2.  Grapevine leafroll-associated virus 3.

Authors:  Hans J Maree; Rodrigo P P Almeida; Rachelle Bester; Kar Mun Chooi; Daniel Cohen; Valerian V Dolja; Marc F Fuchs; Deborah A Golino; Anna E C Jooste; Giovanni P Martelli; Rayapati A Naidu; Adib Rowhani; Pasquale Saldarelli; Johan T Burger
Journal:  Front Microbiol       Date:  2013-04-16       Impact factor: 5.640

Review 3.  Viruses Infecting Trees and Herbs That Produce Edible Fleshy Fruits with a Prominent Value in the Global Market: An Evolutionary Perspective.

Authors:  Lizette Liliana Rodríguez-Verástegui; Candy Yuriria Ramírez-Zavaleta; María Fernanda Capilla-Hernández; Josefat Gregorio-Jorge
Journal:  Plants (Basel)       Date:  2022-01-13
  3 in total

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