Literature DB >> 22560778

Sponge systematics facing new challenges.

P Cárdenas1, T Pérez, N Boury-Esnault.   

Abstract

Systematics is nowadays facing new challenges with the introduction of new concepts and new techniques. Compared to most other phyla, phylogenetic relationships among sponges are still largely unresolved. In the past 10 years, the classical taxonomy has been completely overturned and a review of the state of the art appears necessary. The field of taxonomy remains a prominent discipline of sponge research and studies related to sponge systematics were in greater number in the Eighth World Sponge Conference (Girona, Spain, September 2010) than in any previous world sponge conferences. To understand the state of this rapidly growing field, this chapter proposes to review studies, mainly from the past decade, in sponge taxonomy, nomenclature and phylogeny. In a first part, we analyse the reasons of the current success of this field. In a second part, we establish the current sponge systematics theoretical framework, with the use of (1) cladistics, (2) different codes of nomenclature (PhyloCode vs. Linnaean system) and (3) integrative taxonomy. Sponges are infamous for their lack of characters. However, by listing and discussing in a third part all characters available to taxonomists, we show how diverse characters are and that new ones are being used and tested, while old ones should be revisited. We then review the systematics of the four main classes of sponges (Hexactinellida, Calcispongiae, Homoscleromorpha and Demospongiae), each time focusing on current issues and case studies. We present a review of the taxonomic changes since the publication of the Systema Porifera (2002), and point to problems a sponge taxonomist is still faced with nowadays. To conclude, we make a series of proposals for the future of sponge systematics. In the light of recent studies, we establish a series of taxonomic changes that the sponge community may be ready to accept. We also propose a series of sponge new names and definitions following the PhyloCode. The issue of phantom species (potential new species revealed by molecular studies) is raised, and we show how they could be dealt with. Finally, we present a general strategy to help us succeed in building a Porifera tree along with the corresponding revised Porifera classification.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22560778     DOI: 10.1016/B978-0-12-387787-1.00010-6

Source DB:  PubMed          Journal:  Adv Mar Biol        ISSN: 0065-2881            Impact factor:   5.143


  27 in total

1.  The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

Authors:  Heather Bracken-Grissom; Allen G Collins; Timothy Collins; Keith Crandall; Daniel Distel; Casey Dunn; Gonzalo Giribet; Steven Haddock; Nancy Knowlton; Mark Martindale; Mónica Medina; Charles Messing; Stephen J O'Brien; Gustav Paulay; Nicolas Putnam; Timothy Ravasi; Greg W Rouse; Joseph F Ryan; Anja Schulze; Gert Wörheide; Maja Adamska; Xavier Bailly; Jesse Breinholt; William E Browne; M Christina Diaz; Nathaniel Evans; Jean-François Flot; Nicole Fogarty; Matthew Johnston; Bishoy Kamel; Akito Y Kawahara; Tammy Laberge; Dennis Lavrov; François Michonneau; Leonid L Moroz; Todd Oakley; Karen Osborne; Shirley A Pomponi; Adelaide Rhodes; Scott R Santos; Nori Satoh; Robert W Thacker; Yves Van de Peer; Christian R Voolstra; David Mark Welch; Judith Winston; Xin Zhou
Journal:  J Hered       Date:  2014 Jan-Feb       Impact factor: 2.645

2.  Nearly complete 28S rRNA gene sequences confirm new hypotheses of sponge evolution.

Authors:  Robert W Thacker; April L Hill; Malcolm S Hill; Niamh E Redmond; Allen G Collins; Christine C Morrow; Lori Spicer; Cheryl A Carmack; Megan E Zappe; Deborah Pohlmann; Chelsea Hall; Maria C Diaz; Purushotham V Bangalore
Journal:  Integr Comp Biol       Date:  2013-06-08       Impact factor: 3.326

3.  Molecular phylogenies support homoplasy of multiple morphological characters used in the taxonomy of Heteroscleromorpha (Porifera: Demospongiae).

Authors:  Christine C Morrow; Niamh E Redmond; Bernard E Picton; Robert W Thacker; Allen G Collins; Christine A Maggs; Julia D Sigwart; A Louise Allcock
Journal:  Integr Comp Biol       Date:  2013-06-10       Impact factor: 3.326

4.  A Proposal for the Evolution of Cathepsin and Silicatein in Sponges.

Authors:  Ana Riesgo; Manuel Maldonado; Susanna López-Legentil; Gonzalo Giribet
Journal:  J Mol Evol       Date:  2015-05-19       Impact factor: 2.395

5.  Isolation, Derivative Synthesis, and Structure-Activity Relationships of Antiparasitic Bromopyrrole Alkaloids from the Marine Sponge Tedania brasiliensis.

Authors:  Lizbeth L L Parra; Ariane F Bertonha; Ivan R M Severo; Anna C C Aguiar; Guilherme E de Souza; Glaucius Oliva; Rafael V C Guido; Nathalia Grazzia; Tábata R Costa; Danilo C Miguel; Fernanda R Gadelha; Antonio G Ferreira; Eduardo Hajdu; Daniel Romo; Roberto G S Berlinck
Journal:  J Nat Prod       Date:  2018-01-03       Impact factor: 4.050

Review 6.  Updated Trends on the Biodiscovery of New Marine Natural Products from Invertebrates.

Authors:  Ricardo Calado; Renato Mamede; Sónia Cruz; Miguel C Leal
Journal:  Mar Drugs       Date:  2022-06-09       Impact factor: 6.085

Review 7.  Global diversity of sponges (Porifera).

Authors:  Rob W M Van Soest; Nicole Boury-Esnault; Jean Vacelet; Martin Dohrmann; Dirk Erpenbeck; Nicole J De Voogd; Nadiezhda Santodomingo; Bart Vanhoorne; Michelle Kelly; John N A Hooper
Journal:  PLoS One       Date:  2012-04-27       Impact factor: 3.240

8.  Relationships between host phylogeny, host type and bacterial community diversity in cold-water coral reef sponges.

Authors:  Sandra Schöttner; Friederike Hoffmann; Paco Cárdenas; Hans Tore Rapp; Antje Boetius; Alban Ramette
Journal:  PLoS One       Date:  2013-02-05       Impact factor: 3.240

9.  Systematics and molecular phylogeny of the family oscarellidae (homoscleromorpha) with description of two new oscarella species.

Authors:  Eve Gazave; Dennis V Lavrov; Jory Cabrol; Emmanuelle Renard; Caroline Rocher; Jean Vacelet; Maja Adamska; Carole Borchiellini; Alexander V Ereskovsky
Journal:  PLoS One       Date:  2013-05-30       Impact factor: 3.240

10.  Reconstruction of family-level phylogenetic relationships within Demospongiae (Porifera) using nuclear encoded housekeeping genes.

Authors:  Malcolm S Hill; April L Hill; Jose Lopez; Kevin J Peterson; Shirley Pomponi; Maria C Diaz; Robert W Thacker; Maja Adamska; Nicole Boury-Esnault; Paco Cárdenas; Andia Chaves-Fonnegra; Elizabeth Danka; Bre-Onna De Laine; Dawn Formica; Eduardo Hajdu; Gisele Lobo-Hajdu; Sarah Klontz; Christine C Morrow; Jignasa Patel; Bernard Picton; Davide Pisani; Deborah Pohlmann; Niamh E Redmond; John Reed; Stacy Richey; Ana Riesgo; Ewelina Rubin; Zach Russell; Klaus Rützler; Erik A Sperling; Michael di Stefano; James E Tarver; Allen G Collins
Journal:  PLoS One       Date:  2013-01-23       Impact factor: 3.240

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