Literature DB >> 22554893

Biomechanical profiling of Caenorhabditis elegans motility.

Predrag Krajacic1, Xiaoning Shen, Prashant K Purohit, Paulo Arratia, Todd Lamitina.   

Abstract

Caenorhabditis elegans locomotion is a stereotyped behavior that is ideal for genetic analysis. We integrated video microscopy, image analysis algorithms, and fluid mechanics principles to describe the C. elegans swim gait. Quantification of body shapes and external hydrodynamics and model-based estimates of biomechanics reveal that mutants affecting similar biological processes exhibit related patterns of biomechanical differences. Therefore, biomechanical profiling could be useful for predicting the function of previously unstudied motility genes.

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Year:  2012        PMID： 22554893      PMCID： PMC3389964          DOI： 10.1534/genetics.112.141176

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  21 in total

1.  A gene expression map for Caenorhabditis elegans.

Authors:  S K Kim; J Lund; M Kiraly; K Duke; M Jiang; J M Stuart; A Eizinger; B N Wylie; G S Davidson
Journal:  Science       Date:  2001-09-14       Impact factor: 47.728

2.  A fast marching level set method for monotonically advancing fronts.

Authors:  J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

3.  TM4: a free, open-source system for microarray data management and analysis.

Authors:  A I Saeed; V Sharov; J White; J Li; W Liang; N Bhagabati; J Braisted; M Klapa; T Currier; M Thiagarajan; A Sturn; M Snuffin; A Rezantsev; D Popov; A Ryltsov; E Kostukovich; I Borisovsky; Z Liu; A Vinsavich; V Trush; J Quackenbush
Journal:  Biotechniques       Date:  2003-02       Impact factor: 1.993

4.  Bending amplitude - a new quantitative assay of C. elegans locomotion: identification of phenotypes for mutants in genes encoding muscle focal adhesion components.

Authors:  John F Nahabedian; Hiroshi Qadota; Jeffrey N Stirman; Hang Lu; Guy M Benian
Journal:  Methods       Date:  2011-11-22       Impact factor: 3.608

5.  Material properties of Caenorhabditis elegans swimming at low Reynolds number.

Authors:  J Sznitman; Prashant K Purohit; P Krajacic; T Lamitina; P E Arratia
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

6.  Multi-environment model estimation for motility analysis of Caenorhabditis elegans.

Authors:  Raphael Sznitman; Manaswi Gupta; Gregory D Hager; Paulo E Arratia; Josué Sznitman
Journal:  PLoS One       Date:  2010-07-22       Impact factor: 3.240

7.  An antidepressant that extends lifespan in adult Caenorhabditis elegans.

Authors:  Michael Petrascheck; Xiaolan Ye; Linda B Buck
Journal:  Nature       Date:  2007-11-22       Impact factor: 49.962

8.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

9.  DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Qina Tan; Joseph Kir; David Liu; David Bryant; Yongjian Guo; Robert Stephens; Michael W Baseler; H Clifford Lane; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2007-06-18       Impact factor: 16.971

10.  The Parallel Worm Tracker: a platform for measuring average speed and drug-induced paralysis in nematodes.

Authors:  Daniel Ramot; Brandon E Johnson; Tommie L Berry; Lucinda Carnell; Miriam B Goodman
Journal:  PLoS One       Date:  2008-05-21       Impact factor: 3.240
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  22 in total

1.  High-throughput, motility-based sorter for microswimmers such as C. elegans.

Authors:  Jinzhou Yuan; Jessie Zhou; David M Raizen; Haim H Bau
Journal:  Lab Chip       Date:  2015-05-26       Impact factor: 6.799

2.  Terrain following and applications: Caenorhabditis elegans swims along the floor using a bump and undulate strategy.

Authors:  Jinzhou Yuan; Hungtang Ko; David M Raizen; Haim H Bau
Journal:  J R Soc Interface       Date:  2016-11       Impact factor: 4.118

3.  A dictionary of behavioral motifs reveals clusters of genes affecting Caenorhabditis elegans locomotion.

Authors:  André E X Brown; Eviatar I Yemini; Laura J Grundy; Tadas Jucikas; William R Schafer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-24       Impact factor: 11.205

4.  Characterizations of kinetic power and propulsion of the nematode Caenorhabditis elegans based on a micro-particle image velocimetry system.

Authors:  Wan-Jung Kuo; Yue-Syun Sie; Han-Sheng Chuang
Journal:  Biomicrofluidics       Date:  2014-04-17       Impact factor: 2.800

5.  CLHM-1 is a functionally conserved and conditionally toxic Ca2+-permeable ion channel in Caenorhabditis elegans.

Authors:  Jessica E Tanis; Zhongming Ma; Predrag Krajacic; Liping He; J Kevin Foskett; Todd Lamitina
Journal:  J Neurosci       Date:  2013-07-24       Impact factor: 6.167

6.  Physical exertion exacerbates decline in the musculature of an animal model of Duchenne muscular dystrophy.

Authors:  K J Hughes; A Rodriguez; K M Flatt; S Ray; A Schuler; B Rodemoyer; V Veerappan; K Cuciarone; A Kullman; C Lim; N Gutta; S Vemuri; V Andriulis; D Niswonger; L Barickman; W Stein; A Singhvi; N E Schroeder; A G Vidal-Gadea
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-12       Impact factor: 11.205

7.  Automated high-content phenotyping from the first larval stage till the onset of adulthood of the nematode Caenorhabditis elegans.

Authors:  Huseyin Baris Atakan; Matteo Cornaglia; Laurent Mouchiroud; Johan Auwerx; Martin A M Gijs
Journal:  Lab Chip       Date:  2018-12-18       Impact factor: 6.799

8.  Loss of RAD-23 Protects Against Models of Motor Neuron Disease by Enhancing Mutant Protein Clearance.

Authors:  Angela M Jablonski; Todd Lamitina; Nicole F Liachko; Mariangela Sabatella; Jiayin Lu; Lei Zhang; Lyle W Ostrow; Preetika Gupta; Chia-Yen Wu; Shachee Doshi; Jelena Mojsilovic-Petrovic; Hannes Lans; Jiou Wang; Brian Kraemer; Robert G Kalb
Journal:  J Neurosci       Date:  2015-10-21       Impact factor: 6.167

Review 9.  Caenorhabditis elegans as a Model System for Duchenne Muscular Dystrophy.

Authors:  Rebecca A Ellwood; Mathew Piasecki; Nathaniel J Szewczyk
Journal:  Int J Mol Sci       Date:  2021-05-05       Impact factor: 6.208

10.  Multiparameter behavioral profiling reveals distinct thermal response regimes in Caenorhabditis elegans.

Authors:  Rajarshi Ghosh; Aylia Mohammadi; Leonid Kruglyak; William S Ryu
Journal:  BMC Biol       Date:  2012-10-31       Impact factor: 7.431
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