Literature DB >> 22544899

Sequencing of Cladosporium sphaerospermum, a Dematiaceous fungus isolated from blood culture.

Kee Peng Ng1, Su Mei Yew, Chai Ling Chan, Tuck Soon Soo-Hoo, Shiang Ling Na, Hamimah Hassan, Yun Fong Ngeow, Chee-Choong Hoh, Kok-Wei Lee, Wai-Yan Yee.   

Abstract

Cladosporium sphaerospermum is one of the most widely distributed allergens causing serious problems in patients with respiratory tract disease. We report the 26,644,473-bp draft genome sequence and gene annotation of C. sphaerospermum UM843. Analysis of the genome sequence led to the finding of genes associated with C. sphaerospermum's melanin biosynthesis, allergens, and antifungal drug resistance.

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Year:  2012        PMID： 22544899      PMCID： PMC3346424          DOI： 10.1128/EC.00081-12

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN： 1535-9786


  9 in total

Review 1.  Fungi and allergic lower respiratory tract diseases.

Authors:  Alan P Knutsen; Robert K Bush; Jeffrey G Demain; David W Denning; Anupma Dixit; Abbie Fairs; Paul A Greenberger; Barbara Kariuki; Hirohito Kita; Viswanath P Kurup; Richard B Moss; Robert M Niven; Catherine H Pashley; Raymond G Slavin; Hari M Vijay; Andrew J Wardlaw
Journal:  J Allergy Clin Immunol       Date:  2012-02       Impact factor: 10.793

2.  Subcutaneous phaeohyphomycosis caused by Cladosporium sphaerospermum.

Authors:  Chen Qiu-Xia; Li Chang-Xing; Huang Wen-Ming; Shi Jiang-Qiang; Li Wen; Li Shun-Fang
Journal:  Mycoses       Date:  2008-01       Impact factor: 4.377

3.  Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training.

Authors:  Vardges Ter-Hovhannisyan; Alexandre Lomsadze; Yury O Chernoff; Mark Borodovsky
Journal:  Genome Res       Date:  2008-08-29       Impact factor: 9.043

Review 4.  Biosynthesis of fungal melanins and their importance for human pathogenic fungi.

Authors:  Kim Langfelder; Martin Streibel; Bernhard Jahn; Gerhard Haase; Axel A Brakhage
Journal:  Fungal Genet Biol       Date:  2003-03       Impact factor: 3.495

5.  Genomic analysis of allergen genes in Aspergillus spp: the relevance of genomics to everyday research.

Authors:  Paul Bowyer; David W Denning
Journal:  Med Mycol       Date:  2007-02       Impact factor: 4.076

Review 6.  Fungal melanonychia.

Authors:  Justin Finch; Roberto Arenas; Robert Baran
Journal:  J Am Acad Dermatol       Date:  2012-01-17       Impact factor: 11.527

7.  SOAP: short oligonucleotide alignment program.

Authors:  Ruiqiang Li; Yingrui Li; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2008-01-28       Impact factor: 6.937

8.  Intrabronchial lesion due to Cladosporium sphaerospermum in a healthy, non-asthmatic woman.

Authors:  S Yano; K Koyabashi; K Kato
Journal:  Mycoses       Date:  2003-09       Impact factor: 4.377

9.  Phylogeny and ecology of the ubiquitous saprobe Cladosporium sphaerospermum, with descriptions of seven new species from hypersaline environments.

Authors:  P Zalar; G S de Hoog; H-J Schroers; P W Crous; J Z Groenewald; N Gunde-Cimerman
Journal:  Stud Mycol       Date:  2007       Impact factor: 16.097
  9 in total
  12 in total

1.  Unconventional Cell Division Cycles from Marine-Derived Yeasts.

Authors:  Lorna M Y Mitchison-Field; José M Vargas-Muñiz; Benjamin M Stormo; Ellysa J D Vogt; Sarah Van Dierdonck; James F Pelletier; Christoph Ehrlich; Daniel J Lew; Christine M Field; Amy S Gladfelter
Journal:  Curr Biol       Date:  2019-10-10       Impact factor: 10.834

2.  Biodegradative Activities of Selected Environmental Fungi on a Polyester Polyurethane Varnish and Polyether Polyurethane Foams.

Authors:  Joyce Álvarez-Barragán; Lilianha Domínguez-Malfavón; Martín Vargas-Suárez; Ricardo González-Hernández; Guillermo Aguilar-Osorio; Herminia Loza-Tavera
Journal:  Appl Environ Microbiol       Date:  2016-08-15       Impact factor: 4.792

3.  Xerotolerant Cladosporium sphaerospermum Are Predominant on Indoor Surfaces Compared to Other Cladosporium Species.

Authors:  Frank J J Segers; Martin Meijer; Jos Houbraken; Robert A Samson; Han A B Wösten; Jan Dijksterhuis
Journal:  PLoS One       Date:  2015-12-21       Impact factor: 3.240

4.  Draft genome sequence of Fusicladium effusum, cause of pecan scab.

Authors:  Clive H Bock; Chunxian Chen; Fahong Yu; Katherine L Stevenson; Bruce W Wood
Journal:  Stand Genomic Sci       Date:  2016-06-03

5.  Insight into different environmental niches adaptation and allergenicity from the Cladosporium sphaerospermum genome, a common human allergy-eliciting Dothideomycetes.

Authors:  Su Mei Yew; Chai Ling Chan; Yun Fong Ngeow; Yue Fen Toh; Shiang Ling Na; Kok Wei Lee; Chee-Choong Hoh; Wai-Yan Yee; Kee Peng Ng; Chee Sian Kuan
Journal:  Sci Rep       Date:  2016-05-31       Impact factor: 4.379

6.  DemaDb: an integrated dematiaceous fungal genomes database.

Authors:  Chee Sian Kuan; Su Mei Yew; Chai Ling Chan; Yue Fen Toh; Kok Wei Lee; Wei-Hien Cheong; Wai-Yan Yee; Chee-Choong Hoh; Soon-Joo Yap; Kee Peng Ng
Journal:  Database (Oxford)       Date:  2016-03-15       Impact factor: 3.451

7.  Draft Genome Sequences of Several Fungal Strains Selected for Exposure to Microgravity at the International Space Station.

Authors:  Nitin K Singh; Adriana Blachowicz; Jillian Romsdahl; Clay Wang; Tamas Torok; Kasthuri Venkateswaran
Journal:  Genome Announc       Date:  2017-04-13

8.  Identification of fungi in shotgun metagenomics datasets.

Authors:  Paul D Donovan; Gabriel Gonzalez; Desmond G Higgins; Geraldine Butler; Kimihito Ito
Journal:  PLoS One       Date:  2018-02-14       Impact factor: 3.240

9.  Insight into the cold adaptation and hemicellulose utilization of Cladosporium neopsychrotolerans from genome analysis and biochemical characterization.

Authors:  Rui Ma; Huoqing Huang; Yingguo Bai; Huiying Luo; Yunliu Fan; Bin Yao
Journal:  Sci Rep       Date:  2018-04-17       Impact factor: 4.379

Review 10.  Essential Oils from Neotropical Piper Species and Their Biological Activities.

Authors:  Joyce Kelly da Silva; Rafaela da Trindade; Nayara Sabrina Alves; Pablo Luís Figueiredo; José Guilherme S Maia; William N Setzer
Journal:  Int J Mol Sci       Date:  2017-12-14       Impact factor: 5.923
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