Literature DB >> 22541813

Label-free, multiplexed detection of bacterial tmRNA using silicon photonic microring resonators.

Ott Scheler1, Jared T Kindt, Abraham J Qavi, Lauris Kaplinski, Barry Glynn, Thomas Barry, Ants Kurg, Ryan C Bailey.   

Abstract

A label-free biosensing method for the sensitive detection and identification of bacterial transfer-messenger RNA (tmRNA) is presented employing arrays of silicon photonic microring resonators. Species specific tmRNA molecules are targeted by complementary DNA capture probes that are covalently attached to the sensor surface. Specific hybridization is monitored in near real-time by observing the resonance wavelength shift of each individual microring. The sensitivity of the biosensing platform allowed for detection down to 53 fmol of Streptococcus pneumoniae tmRNA, equivalent to approximately 3.16×10(7) CFU of bacteria. The simplicity and scalability of this biosensing approach makes it a promising tool for the rapid identification of different bacteria via tmRNA profiling.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22541813      PMCID: PMC3367093          DOI: 10.1016/j.bios.2012.03.037

Source DB:  PubMed          Journal:  Biosens Bioelectron        ISSN: 0956-5663            Impact factor:   10.618


  34 in total

Review 1.  Molecular methods for the assessment of bacterial viability.

Authors:  J T Keer; L Birch
Journal:  J Microbiol Methods       Date:  2003-05       Impact factor: 2.363

2.  Characterization of the evanescent field profile and bound mass sensitivity of a label-free silicon photonic microring resonator biosensing platform.

Authors:  Matthew S Luchansky; Adam L Washburn; Teresa A Martin; Muzammil Iqbal; L Cary Gunn; Ryan C Bailey
Journal:  Biosens Bioelectron       Date:  2010-07-12       Impact factor: 10.618

3.  tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter.

Authors:  K C Keiler; L Shapiro; K P Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-05       Impact factor: 11.205

4.  Sensitive on-chip detection of a protein biomarker in human serum and plasma over an extended dynamic range using silicon photonic microring resonators and sub-micron beads.

Authors:  Matthew S Luchansky; Adam L Washburn; Melinda S McClellan; Ryan C Bailey
Journal:  Lab Chip       Date:  2011-05-04       Impact factor: 6.799

5.  Development and validation of a rapid real-time PCR based method for the specific detection of Salmonella on fresh meat.

Authors:  Sheila McGuinness; Evonne McCabe; Edel O'Regan; Anthony Dolan; Geraldine Duffy; Catherine Burgess; Seamus Fanning; Thomas Barry; Justin O'Grady
Journal:  Meat Sci       Date:  2009-07-14       Impact factor: 5.209

6.  Quantitative, label-free detection of five protein biomarkers using multiplexed arrays of silicon photonic microring resonators.

Authors:  Adam L Washburn; Matthew S Luchansky; Adrienne L Bowman; Ryan C Bailey
Journal:  Anal Chem       Date:  2010-01-01       Impact factor: 6.986

7.  Detection of tmRNA molecules on microarrays at low temperatures using helper oligonucleotides.

Authors:  Lauris Kaplinski; Ott Scheler; Sven Parkel; Priit Palta; Kadri Toome; Ants Kurg; Maido Remm
Journal:  BMC Biotechnol       Date:  2010-04-28       Impact factor: 2.563

8.  Label-free quantitation of a cancer biomarker in complex media using silicon photonic microring resonators.

Authors:  Adam L Washburn; L Cary Gunn; Ryan C Bailey
Journal:  Anal Chem       Date:  2009-11-15       Impact factor: 6.986

9.  Comparative 3-D modeling of tmRNA.

Authors:  Jody Burks; Christian Zwieb; Florian Müller; Iwona Wower; Jacek Wower
Journal:  BMC Mol Biol       Date:  2005-06-15       Impact factor: 2.946

10.  Evolution of Streptococcus pneumoniae and its close commensal relatives.

Authors:  Mogens Kilian; Knud Poulsen; Trinelise Blomqvist; Leiv S Håvarstein; Malene Bek-Thomsen; Hervé Tettelin; Uffe B S Sørensen
Journal:  PLoS One       Date:  2008-07-16       Impact factor: 3.240

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  15 in total

1.  Label-free detection with high-Q microcavities: a review of biosensing mechanisms for integrated devices.

Authors:  Frank Vollmer; Lan Yang
Journal:  Nanophotonics       Date:  2012-12-06       Impact factor: 8.449

2.  Whispering gallery mode sensors.

Authors:  Matthew R Foreman; Jon D Swaim; Frank Vollmer
Journal:  Adv Opt Photonics       Date:  2015-06-30       Impact factor: 20.107

3.  A Guide to Quantitative Biomarker Assay Development using Whispering Gallery Mode Biosensors.

Authors:  Heather M Robison; Ryan C Bailey
Journal:  Curr Protoc Chem Biol       Date:  2017-09-14

4.  Optimized sensitivity of Silicon-on-Insulator (SOI) strip waveguide resonator sensor.

Authors:  Sahba TalebiFard; Shon Schmidt; Wei Shi; WenXuan Wu; Nicolas A F Jaeger; Ezra Kwok; Daniel M Ratner; Lukas Chrostowski
Journal:  Biomed Opt Express       Date:  2017-01-03       Impact factor: 3.732

5.  High sensitivity and label-free oligonucleotides detection using photonic bandgap sensing structures biofunctionalized with molecular beacon probes.

Authors:  Ángela Ruiz-Tórtola; Francisco Prats-Quílez; Daniel González-Lucas; María-José Bañuls; Ángel Maquieira; Guy Wheeler; Tamas Dalmay; Amadeu Griol; Juan Hurtado; Jaime García-Rupérez
Journal:  Biomed Opt Express       Date:  2018-03-14       Impact factor: 3.732

6.  Combining asymmetric PCR-based enzymatic amplification with silicon photonic microring resonators for the detection of lncRNAs from low input human RNA samples.

Authors:  Maria C Cardenosa-Rubio; Richard M Graybill; Ryan C Bailey
Journal:  Analyst       Date:  2018-02-26       Impact factor: 4.616

7.  Ultraspecific and highly sensitive nucleic acid detection by integrating a DNA catalytic network with a label-free microcavity.

Authors:  Yuqiang Wu; David Yu Zhang; Peng Yin; Frank Vollmer
Journal:  Small       Date:  2014-02-28       Impact factor: 13.281

Review 8.  Biomolecular analysis with microring resonators: applications in multiplexed diagnostics and interaction screening.

Authors:  Jared T Kindt; Ryan C Bailey
Journal:  Curr Opin Chem Biol       Date:  2013-07-17       Impact factor: 8.822

9.  Targeted Treatment for Bacterial Infections: Prospects for Pathogen-Specific Antibiotics Coupled with Rapid Diagnostics.

Authors:  Tucker Maxson; Douglas A Mitchell
Journal:  Tetrahedron       Date:  2015-10-09       Impact factor: 2.457

10.  Single domain antibodies for the detection of ricin using silicon photonic microring resonator arrays.

Authors:  Winnie W Shia; Ryan C Bailey
Journal:  Anal Chem       Date:  2012-12-28       Impact factor: 6.986

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