Literature DB >> 22538811

Tracking a complete voltage-sensor cycle with metal-ion bridges.

Ulrike Henrion1, Jakob Renhorn, Sara I Börjesson, Erin M Nelson, Christine S Schwaiger, Pär Bjelkmar, Björn Wallner, Erik Lindahl, Fredrik Elinder.   

Abstract

Voltage-gated ion channels open and close in response to changes in membrane potential, thereby enabling electrical signaling in excitable cells. The voltage sensitivity is conferred through four voltage-sensor domains (VSDs) where positively charged residues in the fourth transmembrane segment (S4) sense the potential. While an open state is known from the Kv1.2/2.1 X-ray structure, the conformational changes underlying voltage sensing have not been resolved. We present 20 additional interactions in one open and four different closed conformations based on metal-ion bridges between all four segments of the VSD in the voltage-gated Shaker K channel. A subset of the experimental constraints was used to generate Rosetta models of the conformations that were subjected to molecular simulation and tested against the remaining constraints. This achieves a detailed model of intermediate conformations during VSD gating. The results provide molecular insight into the transition, suggesting that S4 slides at least 12 Å along its axis to open the channel with a 3(10) helix region present that moves in sequence in S4 in order to occupy the same position in space opposite F290 from open through the three first closed states.

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Year:  2012        PMID: 22538811      PMCID: PMC3365220          DOI: 10.1073/pnas.1116938109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

1.  Two atomic constraints unambiguously position the S4 segment relative to S1 and S2 segments in the closed state of Shaker K channel.

Authors:  Fabiana V Campos; Baron Chanda; Benoît Roux; Francisco Bezanilla
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

2.  Sequential formation of ion pairs during activation of a sodium channel voltage sensor.

Authors:  Paul G DeCaen; Vladimir Yarov-Yarovoy; Elizabeth M Sharp; Todd Scheuer; William A Catterall
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-10       Impact factor: 11.205

3.  S4-based voltage sensors have three major conformations.

Authors:  Carlos A Villalba-Galea; Walter Sandtner; Dorine M Starace; Francisco Bezanilla
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-25       Impact factor: 11.205

4.  Gating pore current in an inherited ion channelopathy.

Authors:  Stanislav Sokolov; Todd Scheuer; William A Catterall
Journal:  Nature       Date:  2007-03-01       Impact factor: 49.962

5.  Contributions of counter-charge in a potassium channel voltage-sensor domain.

Authors:  Stephan A Pless; Jason D Galpin; Ana P Niciforovic; Christopher A Ahern
Journal:  Nat Chem Biol       Date:  2011-07-24       Impact factor: 15.040

6.  Multiple products of the Drosophila Shaker gene may contribute to potassium channel diversity.

Authors:  A Kamb; J Tseng-Crank; M A Tanouye
Journal:  Neuron       Date:  1988-07       Impact factor: 17.173

7.  Molecular dynamics investigation of the ω-current in the Kv1.2 voltage sensor domains.

Authors:  Fatemeh Khalili-Araghi; Emad Tajkhorshid; Benoît Roux; Klaus Schulten
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

8.  Improved side-chain torsion potentials for the Amber ff99SB protein force field.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Kim Palmo; Paul Maragakis; John L Klepeis; Ron O Dror; David E Shaw
Journal:  Proteins       Date:  2010-06

9.  Shaker potassium channel gating. III: Evaluation of kinetic models for activation.

Authors:  W N Zagotta; T Hoshi; R W Aldrich
Journal:  J Gen Physiol       Date:  1994-02       Impact factor: 4.086

10.  A voltage-gated proton-selective channel lacking the pore domain.

Authors:  I Scott Ramsey; Magdalene M Moran; Jayhong A Chong; David E Clapham
Journal:  Nature       Date:  2006-03-22       Impact factor: 49.962

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  85 in total

1.  Voltage-sensor cycle fully described.

Authors:  Carmen Domene
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-17       Impact factor: 11.205

Review 2.  Functional diversity of potassium channel voltage-sensing domains.

Authors:  León D Islas
Journal:  Channels (Austin)       Date:  2016-01-21       Impact factor: 2.581

3.  Tethered spectroscopic probes estimate dynamic distances with subnanometer resolution in voltage-dependent potassium channels.

Authors:  Brian W Jarecki; Suqing Zheng; Leili Zhang; Xiaoxun Li; Xin Zhou; Qiang Cui; Weiping Tang; Baron Chanda
Journal:  Biophys J       Date:  2013-12-17       Impact factor: 4.033

4.  S3-S4 linker length modulates the relaxed state of a voltage-gated potassium channel.

Authors:  Michael F Priest; Jérôme J Lacroix; Carlos A Villalba-Galea; Francisco Bezanilla
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

5.  Conformational dynamics of shaker-type Kv1.1 ion channel in open, closed, and two mutated states.

Authors:  Rajabrata Bhuyan; Alpana Seal
Journal:  J Membr Biol       Date:  2014-12-02       Impact factor: 1.843

6.  Free-energy landscape of ion-channel voltage-sensor-domain activation.

Authors:  Lucie Delemotte; Marina A Kasimova; Michael L Klein; Mounir Tarek; Vincenzo Carnevale
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-22       Impact factor: 11.205

7.  Electric fingerprint of voltage sensor domains.

Authors:  Caio S Souza; Cristiano Amaral; Werner Treptow
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

8.  A linkage analysis toolkit for studying allosteric networks in ion channels.

Authors:  Daniel Sigg
Journal:  J Gen Physiol       Date:  2012-12-17       Impact factor: 4.086

9.  Voltage-dependent structural models of the human Hv1 proton channel from long-timescale molecular dynamics simulations.

Authors:  Andrew D Geragotelis; Mona L Wood; Hendrik Göddeke; Liang Hong; Parker D Webster; Eric K Wong; J Alfredo Freites; Francesco Tombola; Douglas J Tobias
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-27       Impact factor: 11.205

10.  Nano-positioning system for structural analysis of functional homomeric proteins in multiple conformations.

Authors:  H Clark Hyde; Walter Sandtner; Ernesto Vargas; Alper T Dagcan; Janice L Robertson; Benoit Roux; Ana M Correa; Francisco Bezanilla
Journal:  Structure       Date:  2012-10-10       Impact factor: 5.006

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