Literature DB >> 22535930

High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes.

Jantiya Isanapong1, Lynne Goodwin, David Bruce, Amy Chen, Chris Detter, James Han, Cliff S Han, Brittany Held, Marcel Huntemann, Natalia Ivanova, Miriam L Land, Konstantinos Mavromatis, Matt Nolan, Amrita Pati, Len Pennacchio, Sam Pitluck, Ernest Szeto, Roxanne Tapia, Tanja Woyke, Jorge L M Rodrigues.   

Abstract

Microbial communities in the termite hindgut are essential for degrading plant material. We present the high-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, the first member of the phylum Verrucomicrobia to be isolated from wood-feeding termites. The genomic analysis reveals genes coding for lignocellulosic degradation and nitrogen fixation.

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Year:  2012        PMID： 22535930      PMCID： PMC3347190          DOI： 10.1128/JB.00264-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

3.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

4.  GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.

Authors:  Amrita Pati; Natalia N Ivanova; Natalia Mikhailova; Galina Ovchinnikova; Sean D Hooper; Athanasios Lykidis; Nikos C Kyrpides
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors:  Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal:  BMC Bioinformatics       Date:  2010-03-08       Impact factor: 3.169

7.  New strategies for cultivation and detection of previously uncultured microbes.

Authors:  Bradley S Stevenson; Stephanie A Eichorst; John T Wertz; Thomas M Schmidt; John A Breznak
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  8 in total
  9 in total

1.  Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium.

Authors:  Jantiya Isanapong; W Sealy Hambright; Austin G Willis; Atcha Boonmee; Stephen J Callister; Kristin E Burnum; Ljiljana Paša-Tolić; Carrie D Nicora; John T Wertz; Thomas M Schmidt; Jorge Lm Rodrigues
Journal:  ISME J       Date:  2013-05-09       Impact factor: 10.302

2.  Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems.

Authors:  Acacio Aparecido Navarrete; Tatiana Rosa Diniz; Lucas Palma Perez Braga; Genivaldo Gueiros Zacarias Silva; Julio Cezar Franchini; Raffaella Rossetto; Robert Alan Edwards; Siu Mui Tsai
Journal:  PLoS One       Date:  2015-06-09       Impact factor: 3.240

3.  Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility.

Authors:  Acacio Aparecido Navarrete; Tielle Soares; Raffaella Rossetto; Johannes Antonie van Veen; Siu Mui Tsai; Eiko Eurya Kuramae
Journal:  Antonie Van Leeuwenhoek       Date:  2015-07-17       Impact factor: 2.271

4.  Host-specific assemblages typify gut microbial communities of related insect species.

Authors:  Zakee L Sabree; Nancy A Moran
Journal:  Springerplus       Date:  2014-03-11

5.  Anthropogenic litter in urban freshwater ecosystems: distribution and microbial interactions.

Authors:  Timothy Hoellein; Miguel Rojas; Adam Pink; Joseph Gasior; John Kelly
Journal:  PLoS One       Date:  2014-06-23       Impact factor: 3.240

Review 6.  Omic research in termites: an overview and a roadmap.

Authors:  Michael E Scharf
Journal:  Front Genet       Date:  2015-03-13       Impact factor: 4.599

7.  Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes.

Authors:  Malini Kotak; Jantiya Isanapong; Lynne Goodwin; David Bruce; Amy Chen; Cliff S Han; Marcel Huntemann; Natalia Ivanova; Miriam L Land; Matt Nolan; Amrita Pati; Tanja Woyke; Jorge L M Rodrigues
Journal:  Genome Announc       Date:  2015-03-05

8.  Potential for Nitrogen Fixation in the Fungus-Growing Termite Symbiosis.

Authors:  Panagiotis Sapountzis; Jane de Verges; Kathrin Rousk; Magdeleen Cilliers; Barend J Vorster; Michael Poulsen
Journal:  Front Microbiol       Date:  2016-12-15       Impact factor: 5.640

9.  Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs.

Authors:  Pedro J Cabello-Yeves; Rohit Ghai; Maliheh Mehrshad; Antonio Picazo; Antonio Camacho; Francisco Rodriguez-Valera
Journal:  Front Microbiol       Date:  2017-11-02       Impact factor: 5.640
  9 in total

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