Literature DB >> 22527625

Description of Fimbriimonas ginsengisoli gen. nov., sp. nov. within the Fimbriimonadia class nov., of the phylum Armatimonadetes.

Wan-Taek Im1, Zi-Ye Hu, Kyoung-Ho Kim, Sung-Keun Rhee, Han Meng, Sung-Taik Lee, Zhe-Xue Quan.   

Abstract

Strain Gsoil 348(T) was isolated from a ginseng field soil sample by selecting micro-colonies from one-fifth strength modified R2A agar medium after a long incubation period. 16S rRNA gene sequence analysis indicated that the strain is related to members of the phylum Armatimonadetes (formerly called candidate phylum OP10). Strain Gsoil 348(T) is mesophilic, strictly aerobic, non-motile and rod-shaped. It only grows in low nutrient media. The major respiratory quinones are menaquinones MK-11 and MK-10, and the main fatty acids are iso-C(15:0), iso-C(17:0), C(16:0) and C(16:1) ω11c. The G+C content is 61.4 mol%. The 16S rRNA gene sequences in public databases belonging to the phylum Armatimonadetes were clustered here into 6 groups. Five of these groups constituted a coherent cluster distinct from the sequences of other phyla in phylogenetic trees that were constructed using multiple-outgroup sequences from 49 different phyla. On the basis of polyphasic taxonomic analyses, it is proposed that strain Gsoil 348(T) (= KACC 14959(T) = JCM 17079(T)) should be placed in Fimbriimonas ginsengisoli gen. nov., sp. nov., as the cultured representative of the Fimbriimonadia class. nov., corresponding with Group 4 of the phylum Armatimonadetes.

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Year:  2012        PMID: 22527625     DOI: 10.1007/s10482-012-9739-6

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  11 in total

1.  Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Authors:  K C Y Lee; C W Herbold; P F Dunfield; X C Morgan; I R McDonald; M B Stott
Journal:  Appl Environ Microbiol       Date:  2013-02-01       Impact factor: 4.792

2.  Illumina-based analysis of the rhizosphere microbial communities associated with healthy and wilted Lanzhou lily (Lilium davidii var. unicolor) plants grown in the field.

Authors:  Qianhan Shang; Guo Yang; Yun Wang; Xiukun Wu; Xia Zhao; Haiting Hao; Yuyao Li; Zhongkui Xie; Yubao Zhang; Ruoyu Wang
Journal:  World J Microbiol Biotechnol       Date:  2016-04-27       Impact factor: 3.312

3.  Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen.

Authors:  Colin M Fitzgerald; Pamela Camejo; J Zachary Oshlag; Daniel R Noguera
Journal:  Water Res       Date:  2014-12-03       Impact factor: 11.236

4.  Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

Authors:  Kevin C-Y Lee; Xochitl C Morgan; Peter F Dunfield; Ivica Tamas; Ian R McDonald; Matthew B Stott
Journal:  ISME J       Date:  2014-01-30       Impact factor: 10.302

5.  The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. I. Microbial Diversity Based on 16S rRNA Gene Amplicons and Metagenomic Sequencing.

Authors:  Vera Thiel; Jason M Wood; Millie T Olsen; Marcus Tank; Christian G Klatt; David M Ward; Donald A Bryant
Journal:  Front Microbiol       Date:  2016-06-17       Impact factor: 5.640

6.  SSUnique: Detecting Sequence Novelty in Microbiome Surveys.

Authors:  Michael D J Lynch; Josh D Neufeld
Journal:  mSystems       Date:  2016-12-20       Impact factor: 6.496

7.  Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer.

Authors:  Thijs Van Gerrewey; Christophe El-Nakhel; Stefania De Pascale; Jolien De Paepe; Peter Clauwaert; Frederiek-Maarten Kerckhof; Nico Boon; Danny Geelen
Journal:  Microorganisms       Date:  2021-06-18

8.  The first complete genome sequence of the class Fimbriimonadia in the phylum Armatimonadetes.

Authors:  Zi-Ye Hu; Yue-Zhu Wang; Wan-Taek Im; Sheng-Yue Wang; Guo-Ping Zhao; Hua-Jun Zheng; Zhe-Xue Quan
Journal:  PLoS One       Date:  2014-06-26       Impact factor: 3.240

9.  The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone.

Authors:  Kevin C Lee; Matthew B Stott; Peter F Dunfield; Curtis Huttenhower; Ian R McDonald; Xochitl C Morgan
Journal:  Appl Environ Microbiol       Date:  2016-05-31       Impact factor: 4.792

10.  Draft Genome Sequences of Two Uncultured Armatimonadetes Associated with a Microcystis sp. (Cyanobacteria) Isolate.

Authors:  Jason N Woodhouse; A Katharina Makower; Hans-Peter Grossart; Elke Dittmann
Journal:  Genome Announc       Date:  2017-10-05
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