Literature DB >> 22524483

Design, synthesis, and antiviral activity of entry inhibitors that target the CD4-binding site of HIV-1.

Francesca Curreli1, Spreeha Choudhury, Ilya Pyatkin, Victor P Zagorodnikov, Anna Khulianova Bulay, Andrea Altieri, Young Do Kwon, Peter D Kwong, Asim K Debnath.   

Abstract

The CD4 binding site on HIV-1 gp120 has been validated as a drug target to prevent HIV-1 entry to cells. Previously, we identified two small molecule inhibitors consisting of a 2,2,6,6-tetramethylpiperidine ring linked by an oxalamide to a p-halide-substituted phenyl group, which target this site, specifically, a cavity termed "Phe43 cavity". Here we use synthetic chemistry, functional assessment, and structure-based analysis to explore variants of each region of these inhibitors for improved antiviral properties. Alterations of the phenyl group and of the oxalamide linker indicated that these regions were close to optimal in the original lead compounds. Design of a series of compounds, where the tetramethylpiperidine ring was replaced with new scaffolds, led to improved antiviral activity. These new scaffolds provide insight into the surface chemistry at the entrance of the cavity and offer additional opportunities by which to optimize further these potential-next-generation therapeutics and microbicides against HIV-1.

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Year:  2012        PMID: 22524483      PMCID: PMC3372086          DOI: 10.1021/jm3002247

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  27 in total

1.  Chemokine receptors and HIV entry.

Authors:  R W Doms
Journal:  AIDS       Date:  2001-02       Impact factor: 4.177

2.  Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening.

Authors:  Thomas A Halgren; Robert B Murphy; Richard A Friesner; Hege S Beard; Leah L Frye; W Thomas Pollard; Jay L Banks
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

3.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

4.  Enhanced exposure of human immunodeficiency virus type 1 primary isolate neutralization epitopes through binding of CD4 mimetic compounds.

Authors:  Kazuhisa Yoshimura; Shigeyoshi Harada; Junji Shibata; Makiko Hatada; Yuko Yamada; Chihiro Ochiai; Hirokazu Tamamura; Shuzo Matsushita
Journal:  J Virol       Date:  2010-05-26       Impact factor: 5.103

5.  Rational design of a CD4 mimic that inhibits HIV-1 entry and exposes cryptic neutralization epitopes.

Authors:  Loïc Martin; François Stricher; Dorothée Missé; Francesca Sironi; Martine Pugnière; Philippe Barthe; Rafael Prado-Gotor; Isabelle Freulon; Xavier Magne; Christian Roumestand; André Ménez; Paolo Lusso; Francisco Veas; Claudio Vita
Journal:  Nat Biotechnol       Date:  2002-12-16       Impact factor: 54.908

6.  Construction and use of a human immunodeficiency virus vector for analysis of virus infectivity.

Authors:  K A Page; N R Landau; D R Littman
Journal:  J Virol       Date:  1990-11       Impact factor: 5.103

7.  Design, synthesis and biological evaluation of small molecule inhibitors of CD4-gp120 binding based on virtual screening.

Authors:  Judith M Lalonde; Mark A Elban; Joel R Courter; Akihiro Sugawara; Takahiro Soeta; Navid Madani; Amy M Princiotto; Young Do Kwon; Peter D Kwong; Arne Schön; Ernesto Freire; Joseph Sodroski; Amos B Smith
Journal:  Bioorg Med Chem       Date:  2010-11-26       Impact factor: 3.641

8.  N-substituted pyrrole derivatives as novel human immunodeficiency virus type 1 entry inhibitors that interfere with the gp41 six-helix bundle formation and block virus fusion.

Authors:  Shibo Jiang; Hong Lu; Shuwen Liu; Qian Zhao; Yuxian He; Asim K Debnath
Journal:  Antimicrob Agents Chemother       Date:  2004-11       Impact factor: 5.191

Review 9.  Enfuvirtide: a novel agent for the treatment of HIV-1 infection.

Authors:  Melody L Duffalo; Christopher W James
Journal:  Ann Pharmacother       Date:  2003-10       Impact factor: 3.154

10.  Enfuvirtide, a new fusion inhibitor for therapy of human immunodeficiency virus infection.

Authors:  Hélène Hardy; Paul R Skolnik
Journal:  Pharmacotherapy       Date:  2004-02       Impact factor: 4.705

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  23 in total

1.  Computational identification of novel entry inhibitor scaffolds mimicking primary receptor CD4 of HIV-1 gp120.

Authors:  Alexander M Andrianov; Ivan A Kashyn; Alexander V Tuzikov
Journal:  J Mol Model       Date:  2017-01-03       Impact factor: 1.810

2.  Synergism between a CD4-mimic peptide and antibodies elicited by a constrained V3 peptide.

Authors:  Adi Moseri; Subramanyam Tantry; Fa-Xiang Ding; Fred Naider; Jacob Anglister
Journal:  AIDS Res Hum Retroviruses       Date:  2012-12-26       Impact factor: 2.205

Review 3.  HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.

Authors:  Guangdi Li; Erik De Clercq
Journal:  Microbiol Mol Biol Rev       Date:  2016-06-29       Impact factor: 11.056

4.  2-Aminothiazolones as anti-HIV agents that act as gp120-CD4 inhibitors.

Authors:  Marika Tiberi; Cristina Tintori; Elisa Rita Ceresola; Roberta Fazi; Claudio Zamperini; Pierpaolo Calandro; Luigi Franchi; Manikandan Selvaraj; Lorenzo Botta; Michela Sampaolo; Diego Saita; Roberto Ferrarese; Massimo Clementi; Filippo Canducci; Maurizio Botta
Journal:  Antimicrob Agents Chemother       Date:  2014-03-10       Impact factor: 5.191

5.  Discovering protein-ligand chalcogen bonding in the protein data bank using endocyclic sulfur-containing heterocycles as ligand search subsets.

Authors:  Miguel O Mitchell
Journal:  J Mol Model       Date:  2017-09-24       Impact factor: 1.810

6.  Design, synthesis and evaluation of small molecule CD4-mimics as entry inhibitors possessing broad spectrum anti-HIV-1 activity.

Authors:  Francesca Curreli; Dmitry S Belov; Ranjith R Ramesh; Naisargi Patel; Andrea Altieri; Alexander V Kurkin; Asim K Debnath
Journal:  Bioorg Med Chem       Date:  2016-09-24       Impact factor: 3.641

7.  Blocking HIV-1 gp120 at the Phe43 cavity: if the extension fits….

Authors:  Barna Dey; Edward A Berger
Journal:  Structure       Date:  2013-06-04       Impact factor: 5.006

Review 8.  Development of Small-molecule HIV Entry Inhibitors Specifically Targeting gp120 or gp41.

Authors:  Lu Lu; Fei Yu; Lifeng Cai; Asim K Debnath; Shibo Jiang
Journal:  Curr Top Med Chem       Date:  2016       Impact factor: 3.295

9.  Structural basis for highly effective HIV-1 neutralization by CD4-mimetic miniproteins revealed by 1.5 Å cocrystal structure of gp120 and M48U1.

Authors:  Priyamvada Acharya; Timothy S Luongo; Mark K Louder; Krisha McKee; Yongping Yang; Young Do Kwon; John R Mascola; Pascal Kessler; Loïc Martin; Peter D Kwong
Journal:  Structure       Date:  2013-05-23       Impact factor: 5.006

10.  Opening the HIV envelope: potential of CD4 mimics as multifunctional HIV entry inhibitors.

Authors:  Annemarie Laumaea; Amos B Smith; Joseph Sodroski; Andrés Finzi
Journal:  Curr Opin HIV AIDS       Date:  2020-09       Impact factor: 4.283

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