Literature DB >> 22523608

The use of classification trees for bioinformatics.

Xiang Chen1, Minghui Wang, Heping Zhang.   

Abstract

Classification trees are non-parametric statistical learning methods that incorporate feature selection and interactions, possess intuitive interpretability, are efficient, and have high prediction accuracy when used in ensembles. This paper provides a brief introduction to the classification tree-based methods, a review of the recent developments, and a survey of the applications in bioinformatics and statistical genetics.

Entities:  

Year:  2011        PMID: 22523608      PMCID: PMC3329156          DOI: 10.1002/widm.14

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev Data Min Knowl Discov        ISSN: 1942-4795


  46 in total

1.  Predictive toxicology: benchmarking molecular descriptors and statistical methods.

Authors:  Jun Feng; Laura Lurati; Haojun Ouyang; Tracy Robinson; Yuanyuan Wang; Shenglan Yuan; S Stanley Young
Journal:  J Chem Inf Comput Sci       Date:  2003 Sep-Oct

2.  Complement factor H polymorphism in age-related macular degeneration.

Authors:  Robert J Klein; Caroline Zeiss; Emily Y Chew; Jen-Yue Tsai; Richard S Sackler; Chad Haynes; Alice K Henning; John Paul SanGiovanni; Shrikant M Mane; Susan T Mayne; Michael B Bracken; Frederick L Ferris; Jurg Ott; Colin Barnstable; Josephine Hoh
Journal:  Science       Date:  2005-03-10       Impact factor: 47.728

3.  Evaluation of different biological data and computational classification methods for use in protein interaction prediction.

Authors:  Yanjun Qi; Ziv Bar-Joseph; Judith Klein-Seetharaman
Journal:  Proteins       Date:  2006-05-15

4.  Prediction of protein-protein interactions using random decision forest framework.

Authors:  Xue-Wen Chen; Mei Liu
Journal:  Bioinformatics       Date:  2005-10-18       Impact factor: 6.937

5.  Exploiting interactions among polymorphisms contributing to complex disease traits with boosted generative modeling.

Authors:  Lu-Yong Wang; Dorin Comaniciu; Daniel Fasulo
Journal:  J Comput Biol       Date:  2006-12       Impact factor: 1.479

6.  Cell and tumor classification using gene expression data: construction of forests.

Authors:  Heping Zhang; Chang-Yung Yu; Burton Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-17       Impact factor: 11.205

7.  Performance of random forest when SNPs are in linkage disequilibrium.

Authors:  Yan A Meng; Yi Yu; L Adrienne Cupples; Lindsay A Farrer; Kathryn L Lunetta
Journal:  BMC Bioinformatics       Date:  2009-03-05       Impact factor: 3.169

8.  Information assessment on predicting protein-protein interactions.

Authors:  Nan Lin; Baolin Wu; Ronald Jansen; Mark Gerstein; Hongyu Zhao
Journal:  BMC Bioinformatics       Date:  2004-10-18       Impact factor: 3.169

9.  'Unite and conquer': enhanced prediction of protein subcellular localization by integrating multiple specialized tools.

Authors:  Yao Qing Shen; Gertraud Burger
Journal:  BMC Bioinformatics       Date:  2007-10-29       Impact factor: 3.169

10.  Investigation of transmembrane proteins using a computational approach.

Authors:  Jack Y Yang; Mary Qu Yang; A Keith Dunker; Youping Deng; Xudong Huang
Journal:  BMC Genomics       Date:  2008       Impact factor: 3.969

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  42 in total

1.  The exploration of feature extraction and machine learning for predicting bone density from simple spine X-ray images in a Korean population.

Authors:  Sangwoo Lee; Eun Kyung Choe; Hae Yeon Kang; Ji Won Yoon; Hua Sun Kim
Journal:  Skeletal Radiol       Date:  2019-11-23       Impact factor: 2.199

2.  Genome-wide QTL mapping of saltwater tolerance in sibling species of Anopheles (malaria vector) mosquitoes.

Authors:  H A Smith; B J White; P Kundert; C Cheng; J Romero-Severson; P Andolfatto; N J Besansky
Journal:  Heredity (Edinb)       Date:  2015-04-29       Impact factor: 3.821

3.  TARV: tree-based analysis of rare variants identifying risk modifying variants in CTNNA2 and CNTNAP2 for alcohol addiction.

Authors:  Chi Song; Heping Zhang
Journal:  Genet Epidemiol       Date:  2014-07-15       Impact factor: 2.135

4.  Rise of Raman spectroscopy in neurosurgery: a review.

Authors:  Damon DePaoli; Émile Lemoine; Katherine Ember; Martin Parent; Michel Prud'homme; Léo Cantin; Kevin Petrecca; Frédéric Leblond; Daniel C Côté
Journal:  J Biomed Opt       Date:  2020-05       Impact factor: 3.170

5.  Predicting Prognostic Effects of Acupuncture for Depression Using the Electroencephalogram.

Authors:  Xiaomao Fan; Xingxian Huang; Yang Zhao; Lin Wang; Haibo Yu; Gansen Zhao
Journal:  Evid Based Complement Alternat Med       Date:  2022-03-02       Impact factor: 2.629

6.  Machine learning in postgenomic biology and personalized medicine.

Authors:  Animesh Ray
Journal:  Wiley Interdiscip Rev Data Min Knowl Discov       Date:  2022-01-24

7.  Above and Beyond Age: Prediction of Major Postoperative Adverse Events in Head and Neck Surgery.

Authors:  Marco A Mascarella; Nikesh Muthukrishnan; Farhad Maleki; Marie-Jeanne Kergoat; Keith Richardson; Alex Mlynarek; Veronique-Isabelle Forest; Caroline Reinhold; Diego R Martin; Michael Hier; Nader Sadeghi; Reza Forghani
Journal:  Ann Otol Rhinol Laryngol       Date:  2021-08-20       Impact factor: 1.973

8.  Comparative Analysis of Major Machine-Learning-Based Path Loss Models for Enclosed Indoor Channels.

Authors:  Mohamed K Elmezughi; Omran Salih; Thomas J Afullo; Kevin J Duffy
Journal:  Sensors (Basel)       Date:  2022-06-30       Impact factor: 3.847

9.  Decision Trees for Glaucoma Screening Based on the Asymmetry of the Retinal Nerve Fiber Layer in Optical Coherence Tomography.

Authors:  Rafael Berenguer-Vidal; Rafael Verdú-Monedero; Juan Morales-Sánchez; Inmaculada Sellés-Navarro; Oleksandr Kovalyk; José-Luis Sancho-Gómez
Journal:  Sensors (Basel)       Date:  2022-06-27       Impact factor: 3.847

10.  Online Education Satisfaction Assessment Based on Machine Learning Model in Wireless Network Environment.

Authors:  Jing Qin
Journal:  Comput Math Methods Med       Date:  2022-06-29       Impact factor: 2.809

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