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Literature DB >> 22517746

Degenerate Primer IDs and the birthday problem.

Daniel J Sheward, Ben Murrell, Carolyn Williamson.

Abstract

Entities: Disease

Mesh：

Substances：
DNA Primers
HIV Protease

Year: 2012 PMID： 22517746 PMCID： PMC3361375 DOI： 10.1073/pnas.1203613109

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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1 in total

1. Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID.

Authors: Cassandra B Jabara; Corbin D Jones; Jeffrey Roach; Jeffrey A Anderson; Ronald Swanstrom
Journal: Proc Natl Acad Sci U S A Date: 2011-11-30 Impact factor: 11.205

1 in total

12 in total

1. Short Communication: Analysis of Minor Populations of Human Immunodeficiency Virus by Primer Identification and Insertion-Deletion and Carry Forward Correction Pipelines.

Authors: Paul Hughes; Wenjie Deng; Scott C Olson; Robert W Coombs; Michael H Chung; Lisa M Frenkel
Journal: AIDS Res Hum Retroviruses Date: 2015-12-15 Impact factor: 2.205

2. Practical innovations for high-throughput amplicon sequencing.

Authors: Derek S Lundberg; Scott Yourstone; Piotr Mieczkowski; Corbin D Jones; Jeffery L Dangl
Journal: Nat Methods Date: 2013-09-01 Impact factor: 28.547

3. Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.

Authors: Shuntai Zhou; Corbin Jones; Piotr Mieczkowski; Ronald Swanstrom
Journal: J Virol Date: 2015-06-03 Impact factor: 5.103

4. RIFRAF: a frame-resolving consensus algorithm.

Authors: Kemal Eren; Ben Murrell
Journal: Bioinformatics Date: 2018-11-15 Impact factor: 6.937

5. Rapid Sequencing of Complete env Genes from Primary HIV-1 Samples.

Authors: Melissa Laird Smith; Ben Murrell; Kemal Eren; Caroline Ignacio; Elise Landais; Steven Weaver; Pham Phung; Colleen Ludka; Lance Hepler; Gemma Caballero; Tristan Pollner; Yan Guo; Douglas Richman; Pascal Poignard; Ellen E Paxinos; Sergei L Kosakovsky Pond; Davey M Smith
Journal: Virus Evol Date: 2016-07-08

6. Quantification of transgene expression in GSH AAVS1 with a novel CRISPR/Cas9-based approach reveals high transcriptional variation.

Authors: Anne Inderbitzin; Tom Loosli; Roger D Kouyos; Karin J Metzner
Journal: Mol Ther Methods Clin Dev Date: 2022-06-09 Impact factor: 5.849

7. Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing.

Authors: Richard H Liang; Theresa Mo; Winnie Dong; Guinevere Q Lee; Luke C Swenson; Rosemary M McCloskey; Conan K Woods; Chanson J Brumme; Cynthia K Y Ho; Janke Schinkel; Jeffrey B Joy; P Richard Harrigan; Art F Y Poon
Journal: Nucleic Acids Res Date: 2014-05-07 Impact factor: 16.971