Literature DB >> 22510158

Electron-induced elimination of the bromide anion from brominated nucleobases. A computational study.

Lidia Chomicz1, Janusz Rak, Piotr Storoniak.   

Abstract

The enhancement of radiodamage to DNA labeled with halonucleobases is attributed to the reactive radical produced from a halonucleobase by the attachment of an electron. We examined at the B3LYP/6-31++G** level electron capture by four brominated nucleobases (BrNBs): 8-bromo-9-methyladenine, 8-bromo-9-methylguanine, 5-bromo-1-methylcytosine, and 5-bromo-1-methyluracil followed by the release of the bromide anion and a nucleobase radical. We demonstrate that neutral BrNBs in both gas and aqueous phases are better electron acceptors than unsubstituted NBs and that resulting anion radicals, BrNBs(•-), can easily transform into the product complex of the bromide anion and the nucleobase radical ([Br(-)···NB(•)]). The overall thermodynamic stimulus for the process starting with the neutral BrNB and ending with the isolated bromide anion and the NB(•) radical is similar in the case of all four BrNBs studied, which suggests their comparable radiosensitizing capabilities.

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Year:  2012        PMID: 22510158     DOI: 10.1021/jp3008738

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Electron stimulated desorption of anions from native and brominated single stranded oligonucleotide trimers.

Authors:  Katarzyna Polska; Janusz Rak; Andrew D Bass; Pierre Cloutier; Léon Sanche
Journal:  J Chem Phys       Date:  2012-02-21       Impact factor: 3.488

2.  5-Thiocyanato-2'-deoxyuridine as a possible radiosensitizer: electron-induced formation of uracil-C5-thiyl radical and its dimerization.

Authors:  Magdalena Zdrowowicz; Lidia Chomicz; Michał Żyndul; Paweł Wityk; Janusz Rak; Tyler J Wiegand; Cameron G Hanson; Amitava Adhikary; Michael D Sevilla
Journal:  Phys Chem Chem Phys       Date:  2015-07-14       Impact factor: 3.676

3.  Quasi-Free Electron-Mediated Radiation Sensitization by C5-Halopyrimidines.

Authors:  Jun Ma; Teseer Bahry; Sergey A Denisov; Amitava Adhikary; Mehran Mostafavi
Journal:  J Phys Chem A       Date:  2021-09-02       Impact factor: 2.944

4.  Radiosensitization of PC3 Prostate Cancer Cells by 5-Thiocyanato-2'-deoxyuridine.

Authors:  Magdalena Zdrowowicz; Magdalena Datta; Michał Rychłowski; Janusz Rak
Journal:  Cancers (Basel)       Date:  2022-04-18       Impact factor: 6.575

5.  Electron-induced reductive debromination of 2,3,4-tribromodiphenyl ether: a computational study.

Authors:  Jin Luo; Jiwei Hu; Yuan Zhuang; Xionghui Wei; Xianfei Huang
Journal:  J Mol Model       Date:  2013-05-15       Impact factor: 1.810

6.  An ESR and DFT study of hydration of the 2'-deoxyuridine-5-yl radical: a possible hydroxyl radical intermediate.

Authors:  Lidia Chomicz; Alex Petrovici; Ian Archbold; Amitava Adhikary; Anil Kumar; Michael D Sevilla; Janusz Rak
Journal:  Chem Commun (Camb)       Date:  2014-12-04       Impact factor: 6.222

7.  Electron-Induced Decomposition of Uracil-5-yl O-(N,N-dimethylsulfamate): Role of Methylation in Molecular Stability.

Authors:  Eugene Arthur-Baidoo; Karina Falkiewicz; Lidia Chomicz-Mańka; Anna Czaja; Sebastian Demkowicz; Karol Biernacki; Witold Kozak; Janusz Rak; Stephan Denifl
Journal:  Int J Mol Sci       Date:  2021-02-26       Impact factor: 5.923

8.  Electron Attachment to 5-Fluorouracil: The Role of Hydrogen Fluoride in Dissociation Chemistry.

Authors:  Eugene Arthur-Baidoo; Gabriel Schöpfer; Milan Ončák; Lidia Chomicz-Mańka; Janusz Rak; Stephan Denifl
Journal:  Int J Mol Sci       Date:  2022-07-28       Impact factor: 6.208

9.  Uracil-5-yl O-Sulfamate: An Illusive Radiosensitizer. Pitfalls in Modeling the Radiosensitizing Derivatives of Nucleobases.

Authors:  Paulina Spisz; Magdalena Zdrowowicz; Witold Kozak; Lidia Chomicz-Mańka; Karina Falkiewicz; Samanta Makurat; Artur Sikorski; Dariusz Wyrzykowski; Janusz Rak; Eugene Arthur-Baidoo; Patrick Ziegler; Mateus Salomao Rodrigues Costa; Stephan Denifl
Journal:  J Phys Chem B       Date:  2020-06-28       Impact factor: 2.991

  9 in total

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