Literature DB >> 22509786

Pharmacokinetics of Py-Im polyamides depend on architecture: cyclic versus linear.

Jevgenij A Raskatov1, Amanda E Hargrove, Alex Y So, Peter B Dervan.   

Abstract

The pharmacokinetic properties of three pyrrole-imidazole (Py-Im) polyamides of similar size and Py-Im content but different shape were studied in the mouse. Remarkably, hairpin and cyclic oligomers programmed for the same DNA sequence 5'-WGGWWW-3' displayed distinct pharmacokinetic properties. Furthermore, the hairpin 1 and cycle 2 exhibited vastly different animal toxicities. These data provide a foundation for design of DNA binding Py-Im polyamides to be tested in vivo.

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Year:  2012        PMID: 22509786      PMCID: PMC3349014          DOI: 10.1021/ja302588v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  27 in total

1.  Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands.

Authors:  S White; J W Szewczyk; J M Turner; E E Baird; P B Dervan
Journal:  Nature       Date:  1998-01-29       Impact factor: 49.962

Review 2.  Transport of macromolecules across microvascular walls: the two-pore theory.

Authors:  B Rippe; B Haraldsson
Journal:  Physiol Rev       Date:  1994-01       Impact factor: 37.312

Review 3.  The fundamental role of epigenetic events in cancer.

Authors:  Peter A Jones; Stephen B Baylin
Journal:  Nat Rev Genet       Date:  2002-06       Impact factor: 53.242

4.  Optimization and validation of a high-performance liquid chromatographic method with UV detection for the determination of pyrrole-imidazole polyamides in rat plasma.

Authors:  Akiko Fukasawa; Takashi Nagashima; Takahiko Aoyama; Noboru Fukuda; Hiroyuki Matsuda; Takahiro Ueno; Hiroshi Sugiyama; Hiroki Nagase; Yoshiaki Matsumoto
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2007-10-05       Impact factor: 3.205

5.  Pharmacokinetic modeling and prediction of plasma pyrrole-imidazole polyamide concentration in rats using simultaneous urinary and biliary excretion data.

Authors:  Takashi Nagashima; Takahiko Aoyama; Tsubasa Yokoe; Akiko Fukasawa; Noboru Fukuda; Takahiro Ueno; Hiroshi Sugiyama; Hiroki Nagase; Yoshiaki Matsumoto
Journal:  Biol Pharm Bull       Date:  2009-05       Impact factor: 2.233

6.  Completion of a Programmable DNA-Binding Small Molecule Library.

Authors:  Carey F Hsu; John W Phillips; John W Trauger; Michelle E Farkas; Jason M Belitsky; Alexander Heckel; Bogdan Z Olenyuk; James W Puckett; Clay C C Wang; Peter B Dervan
Journal:  Tetrahedron       Date:  2007-07-02       Impact factor: 2.457

7.  Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide.

Authors:  Nicholas G Nickols; Peter B Dervan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-12       Impact factor: 11.205

8.  Solid-phase synthesis of DNA binding polyamides on oxime resin.

Authors:  J M Belitsky; D H Nguyen; N R Wurtz; Peter B Dervan
Journal:  Bioorg Med Chem       Date:  2002-08       Impact factor: 3.641

9.  Modulating hypoxia-inducible transcription by disrupting the HIF-1-DNA interface.

Authors:  Nicholas G Nickols; Claire S Jacobs; Michelle E Farkas; Peter B Dervan
Journal:  ACS Chem Biol       Date:  2007-08-17       Impact factor: 5.100

10.  In vivo imaging of pyrrole-imidazole polyamides with positron emission tomography.

Authors:  Daniel A Harki; Nagichettiar Satyamurthy; David B Stout; Michael E Phelps; Peter B Dervan
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-27       Impact factor: 11.205

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  18 in total

1.  An HRE-Binding Py-Im Polyamide Impairs Hypoxic Signaling in Tumors.

Authors:  Jerzy O Szablowski; Jevgenij A Raskatov; Peter B Dervan
Journal:  Mol Cancer Ther       Date:  2015-12-30       Impact factor: 6.261

2.  Correlation of local effects of DNA sequence and position of β-alanine inserts with polyamide-DNA complex binding affinities and kinetics.

Authors:  Shuo Wang; Rupesh Nanjunda; Karl Aston; James K Bashkin; W David Wilson
Journal:  Biochemistry       Date:  2012-11-28       Impact factor: 3.162

3.  Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide.

Authors:  Jevgenij A Raskatov; Nicholas G Nickols; Amanda E Hargrove; Georgi K Marinov; Barbara Wold; Peter B Dervan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-17       Impact factor: 11.205

4.  A C-14 labeled Py-Im polyamide localizes to a subcutaneous prostate cancer tumor.

Authors:  Jevgenij A Raskatov; James W Puckett; Peter B Dervan
Journal:  Bioorg Med Chem       Date:  2014-04-16       Impact factor: 3.641

5.  Androgen receptor antagonism by divalent ethisterone conjugates in castrate-resistant prostate cancer cells.

Authors:  Paul M Levine; Eugine Lee; Alex Greenfield; Richard Bonneau; Susan K Logan; Michael J Garabedian; Kent Kirshenbaum
Journal:  ACS Chem Biol       Date:  2012-08-07       Impact factor: 5.100

6.  Binding studies of a large antiviral polyamide to a natural HPV sequence.

Authors:  Gaofei He; Elena Vasilieva; George Davis Harris; Kevin J Koeller; James K Bashkin; Cynthia M Dupureur
Journal:  Biochimie       Date:  2014-02-26       Impact factor: 4.079

Review 7.  Binding to the DNA minor groove by heterocyclic dications: from AT-specific monomers to GC recognition with dimers.

Authors:  Rupesh Nanjunda; W David Wilson
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2012-12

8.  Activity of a Py-Im polyamide targeted to the estrogen response element.

Authors:  Nicholas G Nickols; Jerzy O Szablowski; Amanda E Hargrove; Benjamin C Li; Jevgenij A Raskatov; Peter B Dervan
Journal:  Mol Cancer Ther       Date:  2013-02-26       Impact factor: 6.261

9.  Antitumor activity of a pyrrole-imidazole polyamide.

Authors:  Fei Yang; Nicholas G Nickols; Benjamin C Li; Georgi K Marinov; Jonathan W Said; Peter B Dervan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-14       Impact factor: 11.205

10.  Single-dose pharmacokinetic and toxicity analysis of pyrrole-imidazole polyamides in mice.

Authors:  Timothy W Synold; Bixin Xi; Jun Wu; Yun Yen; Benjamin C Li; Fei Yang; John W Phillips; Nicholas G Nickols; Peter B Dervan
Journal:  Cancer Chemother Pharmacol       Date:  2012-08-21       Impact factor: 3.333

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