Literature DB >> 22497251

Solution NMR structure, backbone dynamics, and heme-binding properties of a novel cytochrome c maturation protein CcmE from Desulfovibrio vulgaris.

James M Aramini1, Keith Hamilton, Paolo Rossi, Asli Ertekin, Hsiau-Wei Lee, Alexander Lemak, Huang Wang, Rong Xiao, Thomas B Acton, John K Everett, Gaetano T Montelione.   

Abstract

Cytochrome c maturation protein E, CcmE, plays an integral role in the transfer of heme to apocytochrome c in many prokaryotes and some mitochondria. A novel subclass featuring a heme-binding cysteine has been identified in archaea and some bacteria. Here we describe the solution NMR structure, backbone dynamics, and heme binding properties of the soluble C-terminal domain of Desulfovibrio vulgaris CcmE, dvCcmE'. The structure adopts a conserved β-barrel OB fold followed by an unstructured C-terminal tail encompassing the CxxxY heme-binding motif. Heme binding analyses of wild-type and mutant dvCcmE' demonstrate the absolute requirement of residue C127 for noncovalent heme binding in vitro.

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Year:  2012        PMID: 22497251      PMCID: PMC3366507          DOI: 10.1021/bi300457b

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  27 in total

1.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

2.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.

Authors:  Fabian Glaser; Tal Pupko; Inbal Paz; Rachel E Bell; Dalit Bechor-Shental; Eric Martz; Nir Ben-Tal
Journal:  Bioinformatics       Date:  2003-01       Impact factor: 6.937

3.  The CcmC:heme:CcmE complex in heme trafficking and cytochrome c biosynthesis.

Authors:  Cynthia Richard-Fogal; Robert G Kranz
Journal:  J Mol Biol       Date:  2010-06-25       Impact factor: 5.469

Review 4.  Cytochrome c biogenesis: the Ccm system.

Authors:  Carsten Sanders; Serdar Turkarslan; Dong-Woo Lee; Fevzi Daldal
Journal:  Trends Microbiol       Date:  2010-04-08       Impact factor: 17.079

5.  Preparation of protein samples for NMR structure, function, and small-molecule screening studies.

Authors:  Thomas B Acton; Rong Xiao; Stephen Anderson; James Aramini; William A Buchwald; Colleen Ciccosanti; Ken Conover; John Everett; Keith Hamilton; Yuanpeng Janet Huang; Haleema Janjua; Gregory Kornhaber; Jessica Lau; Dong Yup Lee; Gaohua Liu; Melissa Maglaqui; Lichung Ma; Lei Mao; Dayaban Patel; Paolo Rossi; Seema Sahdev; Ritu Shastry; G V T Swapna; Yeufeng Tang; Saichiu Tong; Dongyan Wang; Huang Wang; Li Zhao; Gaetano T Montelione
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

6.  NMR structure of the heme chaperone CcmE reveals a novel functional motif.

Authors:  Elisabeth Enggist; Linda Thöny-Meyer; Peter Güntert; Konstantin Pervushin
Journal:  Structure       Date:  2002-11       Impact factor: 5.006

7.  Solution structure and characterization of the heme chaperone CcmE.

Authors:  Fabio Arnesano; Lucia Banci; Paul D Barker; Ivano Bertini; Antonio Rosato; Xun Cheng Su; Maria Silvia Viezzoli
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

8.  The CcmE protein of the c-type cytochrome biogenesis system: unusual in vitro heme incorporation into apo-CcmE and transfer from holo-CcmE to apocytochrome.

Authors:  Oliver Daltrop; Julie M Stevens; Christopher W Higham; Stuart J Ferguson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

Review 9.  Cytochrome c biogenesis: mechanisms for covalent modifications and trafficking of heme and for heme-iron redox control.

Authors:  Robert G Kranz; Cynthia Richard-Fogal; John-Stephen Taylor; Elaine R Frawley
Journal:  Microbiol Mol Biol Rev       Date:  2009-09       Impact factor: 11.056

10.  Probing the heme-binding site of the cytochrome c maturation protein CcmE.

Authors:  Edgar M Harvat; Christina Redfield; Julie M Stevens; Stuart J Ferguson
Journal:  Biochemistry       Date:  2009-03-03       Impact factor: 3.162

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  4 in total

1.  Histidine residues are important for preserving the structure and heme binding to the C. elegans HRG-3 heme-trafficking protein.

Authors:  Ortal Marciano; Yoni Moskovitz; Iqbal Hamza; Sharon Ruthstein
Journal:  J Biol Inorg Chem       Date:  2015-11-03       Impact factor: 3.358

2.  During Cytochrome c Maturation CcmI Chaperones the Class I Apocytochromes until the Formation of Their b-Type Cytochrome Intermediates.

Authors:  Andreia F Verissimo; Namita P Shroff; Fevzi Daldal
Journal:  J Biol Chem       Date:  2015-05-15       Impact factor: 5.157

Review 3.  Cytochrome c biogenesis System I: an intricate process catalyzed by a maturase supercomplex?

Authors:  Andreia F Verissimo; Fevzi Daldal
Journal:  Biochim Biophys Acta       Date:  2014-03-14

Review 4.  Protein Machineries Involved in the Attachment of Heme to Cytochrome c: Protein Structures and Molecular Mechanisms.

Authors:  Carlo Travaglini-Allocatelli
Journal:  Scientifica (Cairo)       Date:  2013-12-23
  4 in total

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