Literature DB >> 22495966

A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts.

Anastassia Khrouchtchova1, Rita-Ann Monde, Alice Barkan.   

Abstract

A maize gene designated thylakoid assembly 8 (tha8) emerged from a screen for nuclear mutations that cause defects in the biogenesis of chloroplast thylakoid membranes. The tha8 gene encodes an unusual member of the pentatricopeptide repeat (PPR) family, a family of helical repeat proteins that participate in various aspects of organellar RNA metabolism. THA8 localizes to chloroplasts, where it associates specifically with the ycf3-2 and trnA group II introns. The splicing of ycf3-2 is eliminated in tha8 mutants, and trnA splicing is strongly compromised. Reverse-genetic analysis of the tha8 ortholog in Arabidopsis thaliana showed that these molecular functions are conserved, although null alleles are embryo lethal in Arabidopsis and seedling lethal in maize. Whereas most PPR proteins have more than 10 PPR motifs, THA8 belongs to a subfamily of plant PPR proteins with only four PPR motifs and little else. THA8 is the first member of this subfamily with a defined molecular function, and illustrates that even small PPR proteins have the potential to mediate specific intermolecular interactions in vivo.

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Year:  2012        PMID: 22495966      PMCID: PMC3358642          DOI: 10.1261/rna.032623.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  48 in total

Review 1.  Nuclearly encoded splicing factors implicated in RNA splicing in higher plant organelles.

Authors:  Andéol Falcon de Longevialle; Ian D Small; Claire Lurin
Journal:  Mol Plant       Date:  2010-07-05       Impact factor: 13.164

2.  Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein.

Authors:  Jana Prikryl; Margarita Rojas; Gadi Schuster; Alice Barkan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-20       Impact factor: 11.205

3.  Expression of plastid genes: organelle-specific elaborations on a prokaryotic scaffold.

Authors:  Alice Barkan
Journal:  Plant Physiol       Date:  2011-02-23       Impact factor: 8.340

4.  OTP70 is a pentatricopeptide repeat protein of the E subgroup involved in splicing of the plastid transcript rpoC1.

Authors:  Anne-Laure Chateigner-Boutin; Catherine Colas des Francs-Small; Etienne Delannoy; Sabine Kahlau; Sandra K Tanz; Andéol Falcon de Longevialle; Sota Fujii; Ian Small
Journal:  Plant J       Date:  2011-01-04       Impact factor: 6.417

5.  An organellar maturase associates with multiple group II introns.

Authors:  Reimo Zoschke; Masayuki Nakamura; Karsten Liere; Masahiro Sugiura; Thomas Börner; Christian Schmitz-Linneweber
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-28       Impact factor: 11.205

6.  Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

Authors:  Sota Fujii; Charles S Bond; Ian D Small
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-10       Impact factor: 11.205

7.  I-TASSER: a unified platform for automated protein structure and function prediction.

Authors:  Ambrish Roy; Alper Kucukural; Yang Zhang
Journal:  Nat Protoc       Date:  2010-03-25       Impact factor: 13.491

8.  Identification of a pentatricopeptide repeat protein implicated in splicing of intron 1 of mitochondrial nad7 transcripts.

Authors:  Anna Koprivova; Catherine Colas des Francs-Small; Grant Calder; Sam T Mugford; Sandra Tanz; Bok-Rye Lee; Bernd Zechmann; Ian Small; Stanislav Kopriva
Journal:  J Biol Chem       Date:  2010-08-03       Impact factor: 5.157

9.  ABA overly-sensitive 5 (ABO5), encoding a pentatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3, is involved in the abscisic acid response in Arabidopsis.

Authors:  Yue Liu; Junna He; Zhizhong Chen; Xiaozhi Ren; Xuhui Hong; Zhizhong Gong
Journal:  Plant J       Date:  2010-09       Impact factor: 6.417

10.  Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.

Authors:  Nicole Bryant; Johnny Lloyd; Colleen Sweeney; Fumiyoshi Myouga; David Meinke
Journal:  Plant Physiol       Date:  2010-12-07       Impact factor: 8.340

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  45 in total

1.  Function of PPR proteins in plastid gene expression.

Authors:  Toshiharu Shikanai; Sota Fujii
Journal:  RNA Biol       Date:  2013-05-30       Impact factor: 4.652

2.  Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition.

Authors:  Ting Ban; Jiyuan Ke; Runze Chen; Xin Gu; M H Eileen Tan; X Edward Zhou; Yanyong Kang; Karsten Melcher; Jian-Kang Zhu; H Eric Xu
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

3.  Structural basis for the modular recognition of single-stranded RNA by PPR proteins.

Authors:  Ping Yin; Quanxiu Li; Chuangye Yan; Ying Liu; Junjie Liu; Feng Yu; Zheng Wang; Jiafu Long; Jianhua He; Hong-Wei Wang; Jiawei Wang; Jian-Kang Zhu; Yigong Shi; Nieng Yan
Journal:  Nature       Date:  2013-10-27       Impact factor: 49.962

4.  Structural basis for RNA recognition by a dimeric PPR-protein complex.

Authors:  Jiyuan Ke; Run-Ze Chen; Ting Ban; X Edward Zhou; Xin Gu; M H Eileen Tan; Chen Chen; Yanyong Kang; Joseph S Brunzelle; Jian-Kang Zhu; Karsten Melcher; H Eric Xu
Journal:  Nat Struct Mol Biol       Date:  2013-11-03       Impact factor: 15.369

5.  PUMPKIN, the Sole Plastid UMP Kinase, Associates with Group II Introns and Alters Their Metabolism.

Authors:  Lisa-Marie Schmid; Lisa Ohler; Torsten Möhlmann; Andreas Brachmann; Jose M Muiño; Dario Leister; Jörg Meurer; Nikolay Manavski
Journal:  Plant Physiol       Date:  2018-11-08       Impact factor: 8.340

6.  Maize Dek37 Encodes a P-type PPR Protein That Affects cis-Splicing of Mitochondrial nad2 Intron 1 and Seed Development.

Authors:  Dawei Dai; Shengchao Luan; Xiuzu Chen; Qun Wang; Yang Feng; Chenguang Zhu; Weiwei Qi; Rentao Song
Journal:  Genetics       Date:  2018-01-04       Impact factor: 4.562

7.  Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK.

Authors:  Stefanie Hertel; Reimo Zoschke; Laura Neumann; Yujiao Qu; Ilka M Axmann; Christian Schmitz-Linneweber
Journal:  Plant Physiol       Date:  2013-10-30       Impact factor: 8.340

8.  PPR protein PDM1/SEL1 is involved in RNA editing and splicing of plastid genes in Arabidopsis thaliana.

Authors:  Hong-Dao Zhang; Yong-Lan Cui; Chao Huang; Qian-Qian Yin; Xue-Mei Qin; Te Xu; Xiao-Fang He; Yi Zhang; Zi-Ran Li; Zhong-Nan Yang
Journal:  Photosynth Res       Date:  2015-06-30       Impact factor: 3.573

Review 9.  Structural mechanisms of RNA recognition: sequence-specific and non-specific RNA-binding proteins and the Cas9-RNA-DNA complex.

Authors:  Ting Ban; Jian-Kang Zhu; Karsten Melcher; H Eric Xu
Journal:  Cell Mol Life Sci       Date:  2014-11-29       Impact factor: 9.261

10.  Mitochondrial Function and Maize Kernel Development Requires Dek2, a Pentatricopeptide Repeat Protein Involved in nad1 mRNA Splicing.

Authors:  Weiwei Qi; Yang Yang; Xuzhen Feng; Mingliang Zhang; Rentao Song
Journal:  Genetics       Date:  2016-11-04       Impact factor: 4.562

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