| Literature DB >> 22493560 |
Kriti Bahl1, Anoop Saraya, Rinu Sharma.
Abstract
BACKGROUND: Early stages of esophageal cancer lack a specific symptom, a reliable biomarker and accurate non-invasive diagnostic modalities prompting the pressing need for identification of a marker for early diagnosis of this disease.Entities:
Keywords: Bmi-1; Nanog; Oct3/4; Sox-2; pluripotent
Year: 2012 PMID: 22493560 PMCID: PMC3320115 DOI: 10.4137/BMI.S8452
Source DB: PubMed Journal: Biomark Insights ISSN: 1177-2719
Parameters for RT-PCR analysis of stem cell related genes.
| Gene | Annealing temperature (°C) | Primer combination | Product length (bp) |
|---|---|---|---|
| Oct-4 | 58 °C | 5′ GAG GAG TCC CAG GAC ATC AA 3′ | 429 bp |
| Sox-2 | 64 °C | 5′ GCC TGG GCG CCG AGT GGA 3′ | 443 bp |
| Nanog | 58 °C | 5′ GGGCGAGCCGTTCATGTAGGTCTG 3′ | 438 bp |
| Bmi-1 | 57 °C | 5′ CAG CAA TGA CTG TGA TGC ACT 3′ | 799 bp |
| βactin | 62 °C | 5′-CAG CCA TGT ACG TTG CTA TCC AG-3′ | 646 bp |
Overexpression of Stem cell related mRNA transcripts in human ESCCs, preneoplastic and normal esophageal epithelium.
| Tissue type | Oct-4 positive | Sox-2 positive | Nanog positive | Bmi-1 positive |
|---|---|---|---|---|
| ESCC | 23/25 (92) | 21/22 (95) | 14/21 (67) | 15/20 (75) |
| Preneoplasia (Hyperplasia and Dysplasia) | 5/8 (63) | 4/5 (80) | 4/5 (80) | 2/3 (67) |
| Age | ||||
| ≤40 | 26/29 (90) | 22/24 (92) | 15/23 (65) | 15/21 (71) |
| >40 | 3/4 (75) | 2/3 (67) | 3/3 (100) | 2/2 (100) |
| Gender | ||||
| Male | 19/22 (86.3) | 15/18 (83.3) | 12/17 (70.5) | 10/15 (66.6) |
| Female | 11/11 (100) | 9/9 (100) | 6/9 (67) | 7/8 (88) |
Figure 1Representative 1% agarose showing the RT-PCR analysis of stem cell related genes in representative esophageal tissues. (A) shows a 429 bp Oct-4 amplicon in 4 distant normal tissues (N1-N4) and 4 ESCC tissues (C1-C4). (B) shows a 429 bp Oct-4 amplicon in 7 ESCC patients’ sera (S1-S7) and 1 normal subject sera (NS). (C) shows a 438 bp Sox-2 amplicon in 4 distant normal tissues (N1-N4) and 4 ESCC tissues (C1-C4). (D) shows a 443 bp Nanog amplicon in 4 distant normal tissues (N1-N4) and 4 ESCC patients (C1-C4). (E) shows a 443 bp Nanog amplicon in 8 ESCC patients’ sera (S1-S8) and 1 normal subject sera (NS). (F) shows a 799 bp Bmi-1 amplicon in 3 distant normal tissues (N1-N3) and 4 ESCC patients (C1-C3). (G) shows a 646 bp amplification of β-actin in the respective esophageal tissue samples.
Figure 2Histogram showing the expression levels of stem cell related genes relative to β-actin expression in representative esophageal tissues using densitometric analysis of RT-PCR products (A) shows the relative expression of Oct-4 in 4 distant normals (N1-N4) and 4 ESCC tissues (C1-C4). (B) shows the relative expression of Sox-2 in 4 distant normals (N1-N4) and 4 ESCC tissues (C1-C4) (C) shows the relative expression of Nanog in 4 distant normals (N1-N4) and 4 ESCC tissues (C1-C4) (D) shows the relative expression of Bmi-1 in 3 distant normals (N1-N3) and 3 ESCC tissues (C1-C3).
Figure 3Histogram showing the expression levels of stem cell related genes Oct-4, Sox-2, Nanog and Bmi-1 expression in representative esophageal tissues using quantitative real time PCR. Δct =cttarget gene − ctreference gene.