Literature DB >> 22483202

Cell-free biology: exploiting the interface between synthetic biology and synthetic chemistry.

D Calvin Harris1, Michael C Jewett.   

Abstract

Just as synthetic organic chemistry once revolutionized the ability of chemists to build molecules (including those that did not exist in nature) following a basic set of design rules, cell-free synthetic biology is beginning to provide an improved toolbox and faster process for not only harnessing but also expanding the chemistry of life. At the interface between chemistry and biology, research in cell-free synthetic systems is proceeding in two different directions: using synthetic biology for synthetic chemistry and using synthetic chemistry to reprogram or mimic biology. In the coming years, the impact of advances inspired by these approaches will make possible the synthesis of nonbiological polymers having new backbone compositions, new chemical properties, new structures, and new functions.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22483202      PMCID: PMC4038125          DOI: 10.1016/j.copbio.2012.02.002

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  55 in total

1.  An unnatural base pair for incorporating amino acid analogs into proteins.

Authors:  Ichiro Hirao; Takashi Ohtsuki; Tsuyoshi Fujiwara; Tsuneo Mitsui; Tomoko Yokogawa; Taeko Okuni; Hiroshi Nakayama; Koji Takio; Takashi Yabuki; Takanori Kigawa; Koichiro Kodama; Takashi Yokogawa; Kazuya Nishikawa; Shigeyuki Yokoyama
Journal:  Nat Biotechnol       Date:  2002-02       Impact factor: 54.908

2.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

3.  Multistep small-molecule synthesis programmed by DNA templates.

Authors:  Zev J Gartner; Matthew W Kanan; David R Liu
Journal:  J Am Chem Soc       Date:  2002-09-04       Impact factor: 15.419

4.  Programming peptidomimetic syntheses by translating genetic codes designed de novo.

Authors:  Anthony C Forster; Zhongping Tan; Madhavi N L Nalam; Hening Lin; Hui Qu; Virginia W Cornish; Stephen C Blacklow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

Review 5.  Historical review: Deciphering the genetic code--a personal account.

Authors:  Marshall Nirenberg
Journal:  Trends Biochem Sci       Date:  2004-01       Impact factor: 13.807

6.  DNA-templated organic synthesis and selection of a library of macrocycles.

Authors:  Zev J Gartner; Brian N Tse; Rozalina Grubina; Jeffrey B Doyon; Thomas M Snyder; David R Liu
Journal:  Science       Date:  2004-08-19       Impact factor: 47.728

7.  Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis.

Authors:  Harris H Wang; Po-Yi Huang; George Xu; Wilhelm Haas; Adam Marblestone; Jun Li; Steven P Gygi; Anthony C Forster; Michael C Jewett; George M Church
Journal:  ACS Synth Biol       Date:  2012-02-17       Impact factor: 5.110

8.  Expanding the genetic alphabet: non-epimerizing nucleoside with the pyDDA hydrogen-bonding pattern.

Authors:  Daniel Hutter; Steven A Benner
Journal:  J Org Chem       Date:  2003-12-12       Impact factor: 4.354

9.  Converting nonsense codons into sense codons by targeted pseudouridylation.

Authors:  John Karijolich; Yi-Tao Yu
Journal:  Nature       Date:  2011-06-15       Impact factor: 49.962

10.  Microscale to manufacturing scale-up of cell-free cytokine production--a new approach for shortening protein production development timelines.

Authors:  James F Zawada; Gang Yin; Alexander R Steiner; Junhao Yang; Alpana Naresh; Sushmita M Roy; Daniel S Gold; Henry G Heinsohn; Christopher J Murray
Journal:  Biotechnol Bioeng       Date:  2011-03-31       Impact factor: 4.530

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  18 in total

Review 1.  Expanding P450 catalytic reaction space through evolution and engineering.

Authors:  John A McIntosh; Christopher C Farwell; Frances H Arnold
Journal:  Curr Opin Chem Biol       Date:  2014-03-20       Impact factor: 8.822

2.  Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing.

Authors:  Jinzhen Fan; Fernando Villarreal; Brent Weyers; Yunfeng Ding; Kuo Hao Tseng; Jiannan Li; Baoqing Li; Cheemeng Tan; Tingrui Pan
Journal:  Lab Chip       Date:  2017-06-27       Impact factor: 6.799

3.  High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling.

Authors:  Joseph A Rollin; Julia Martin del Campo; Suwan Myung; Fangfang Sun; Chun You; Allison Bakovic; Roberto Castro; Sanjeev K Chandrayan; Chang-Hao Wu; Michael W W Adams; Ryan S Senger; Y-H Percival Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

Review 4.  Early engineering approaches to improve peptide developability and manufacturability.

Authors:  Jennifer L Furman; Mark Chiu; Michael J Hunter
Journal:  AAPS J       Date:  2014-10-23       Impact factor: 4.009

5.  Functional Surface-immobilization of Genes Using Multistep Strand Displacement Lithography.

Authors:  Günther Pardatscher; Matthaeus Schwarz-Schilling; Sandra Sagredo; Friedrich C Simmel
Journal:  J Vis Exp       Date:  2018-10-25       Impact factor: 1.355

Review 6.  Synthetic in vitro circuits.

Authors:  Adam J Hockenberry; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2012-06-05       Impact factor: 8.822

7.  Microfluidic cap-to-dispense (μCD): a universal microfluidic-robotic interface for automated pipette-free high-precision liquid handling.

Authors:  Jingjing Wang; Ka Deng; Chuqing Zhou; Zecong Fang; Conary Meyer; Kaustubh Umesh-Anjali Deshpande; Zhihao Li; Xianqiang Mi; Qian Luo; Bruce D Hammock; Cheemeng Tan; Yan Chen; Tingrui Pan
Journal:  Lab Chip       Date:  2019-10-09       Impact factor: 6.799

8.  Molecular crowding shapes gene expression in synthetic cellular nanosystems.

Authors:  Cheemeng Tan; Saumya Saurabh; Marcel P Bruchez; Russell Schwartz; Philip Leduc
Journal:  Nat Nanotechnol       Date:  2013-07-14       Impact factor: 39.213

9.  Enhanced regulation of prokaryotic gene expression by a eukaryotic transcriptional activator.

Authors:  I Cody MacDonald; Travis R Seamons; Jonathan C Emmons; Shwan B Javdan; Tara L Deans
Journal:  Nat Commun       Date:  2021-07-05       Impact factor: 14.919

10.  Validation of an entirely in vitro approach for rapid prototyping of DNA regulatory elements for synthetic biology.

Authors:  James Chappell; Kirsten Jensen; Paul S Freemont
Journal:  Nucleic Acids Res       Date:  2013-01-31       Impact factor: 16.971

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