Literature DB >> 12197733

Multistep small-molecule synthesis programmed by DNA templates.

Zev J Gartner1, Matthew W Kanan, David R Liu.   

Abstract

The translation of DNA sequences into synthetic products is a key requirement of our approach to evolving synthetic molecules through iterated cycles of translation, selection, and amplification. Here we report general linker and purification strategies for sequence-specific DNA-templated synthesis that collectively enable the product of a DNA-templated reaction to be isolated and to undergo subsequent DNA-templated reactions. Using these strategies, we have achieved the first multistep nucleic acid-templated small-molecule syntheses to generate two different molecules. In addition to representing a method for translating DNA templates sequence-specifically into corresponding multistep synthetic products, our findings also provide experimental support for previously proposed models invoking multistep nucleic acid-templated synthesis as mediating the prebiotic translation of replicable information into the earliest functional molecules.

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Year:  2002        PMID: 12197733     DOI: 10.1021/ja027307d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  23 in total

1.  DNA-templated organic synthesis and selection of a library of macrocycles.

Authors:  Zev J Gartner; Brian N Tse; Rozalina Grubina; Jeffrey B Doyon; Thomas M Snyder; David R Liu
Journal:  Science       Date:  2004-08-19       Impact factor: 47.728

2.  DNA nanotechnology: steps towards automated synthesis.

Authors:  Alexandru Rotaru; Kurt V Gothelf
Journal:  Nat Nanotechnol       Date:  2010-10-10       Impact factor: 39.213

3.  Double displacement: An improved bioorthogonal reaction strategy for templated nucleic acid detection.

Authors:  Daniel J Kleinbaum; Gregory P Miller; Eric T Kool
Journal:  Bioconjug Chem       Date:  2010-06-16       Impact factor: 4.774

Review 4.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

5.  Effects of template sequence and secondary structure on DNA-templated reactivity.

Authors:  Thomas M Snyder; Brian N Tse; David R Liu
Journal:  J Am Chem Soc       Date:  2008-01-08       Impact factor: 15.419

6.  Rational development of a strategy for modifying the aggregatibility of proteins.

Authors:  Zhongping Tan; Shiying Shang; Samuel J Danishefsky
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

7.  Translation of DNA into a library of 13,000 synthetic small-molecule macrocycles suitable for in vitro selection.

Authors:  Brian N Tse; Thomas M Snyder; Yinghua Shen; David R Liu
Journal:  J Am Chem Soc       Date:  2008-10-29       Impact factor: 15.419

8.  Selection of bead-displayed, PNA-encoded chemicals.

Authors:  Natalie R Gassman; J Patrick Nelli; Samrat Dutta; Adam Kuhn; Keith Bonin; Zbigniew Pianowski; Nicolas Winssinger; Martin Guthold; Jed C Macosko
Journal:  J Mol Recognit       Date:  2010 Sep-Oct       Impact factor: 2.137

9.  A proximity-based programmable DNA nanoscale assembly line.

Authors:  Hongzhou Gu; Jie Chao; Shou-Jun Xiao; Nadrian C Seeman
Journal:  Nature       Date:  2010-05-13       Impact factor: 49.962

10.  Double-stranded DNA-templated cleavage of oligonucleotides containing a P3'->N5' linkage triggered by triplex formation: the effects of chemical modifications and remarkable enhancement in reactivity.

Authors:  Kosuke Ramon Ito; Tetsuya Kodama; Masaharu Tomizu; Yoshinori Negoro; Ayako Orita; Tomohisa Osaki; Noritsugu Hosoki; Takaya Tanaka; Takeshi Imanishi; Satoshi Obika
Journal:  Nucleic Acids Res       Date:  2010-07-08       Impact factor: 16.971

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