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Literature DB >> 22461545

Complete genome sequence of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid.

Hiroaki Kato¹, Yuh Shiwa, Kenshiro Oshima, Miki Machii, Tomoko Araya-Kojima, Takeshi Zendo, Mariko Shimizu-Kadota, Masahira Hattori, Kenji Sonomoto, Hirofumi Yoshikawa.

Abstract

We report the complete genome sequence of Lactococcus lactis IO-1 (= JCM7638). It is a nondairy lactic acid bacterium, produces nisin Z, ferments xylose, and produces predominantly L-lactic acid at high xylose concentrations. From ortholog analysis with other five L. lactis strains, IO-1 was identified as L. lactis subsp. lactis.

Entities: Chemical Species

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Year: 2012 PMID： 22461545 PMCID： PMC3318493 DOI： 10.1128/JB.00074-12

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

7 in total

1. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors: B Ewing; L Hillier; M C Wendl; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

2. Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors: B Ewing; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

3. Consed: a graphical tool for sequence finishing.

Authors: D Gordon; C Abajian; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

4. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors: T M Lowe; S R Eddy
Journal: Nucleic Acids Res Date: 1997-03-01 Impact factor: 16.971

Review 5. 10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis.

Authors: Igor Mierau; Michiel Kleerebezem
Journal: Appl Microbiol Biotechnol Date: 2005-10-13 Impact factor: 4.813

6. Two different pathways for D-xylose metabolism and the effect of xylose concentration on the yield coefficient of L-lactate in mixed-acid fermentation by the lactic acid bacterium Lactococcus lactis IO-1.

Authors: K Tanaka; A Komiyama; K Sonomoto; A Ishizaki; S J Hall; P F Stanbury
Journal: Appl Microbiol Biotechnol Date: 2002-08-17 Impact factor: 4.813

7. Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism.

Authors: Kenji Nakahigashi; Yoshihiro Toya; Nobuyoshi Ishii; Tomoyoshi Soga; Miki Hasegawa; Hisami Watanabe; Yuki Takai; Masayuki Honma; Hirotada Mori; Masaru Tomita
Journal: Mol Syst Biol Date: 2009-09-15 Impact factor: 11.429

7 in total

22 in total

1. Unleashing Natural Competence in Lactococcus lactis by Induction of the Competence Regulator ComX.

Authors: Joyce Mulder; Michiel Wels; Oscar P Kuipers; Michiel Kleerebezem; Peter A Bron
Journal: Appl Environ Microbiol Date: 2017-09-29 Impact factor: 4.792

2. Lactococcus lactis Diversity in Undefined Mixed Dairy Starter Cultures as Revealed by Comparative Genome Analyses and Targeted Amplicon Sequencing of epsD.

Authors: Cyril A Frantzen; Hans Petter Kleppen; Helge Holo
Journal: Appl Environ Microbiol Date: 2018-01-17 Impact factor: 4.792

3. The carbohydrate metabolism signature of lactococcus lactis strain A12 reveals its sourdough ecosystem origin.

Authors: Delphine Passerini; Michèle Coddeville; Pascal Le Bourgeois; Pascal Loubière; Paul Ritzenthaler; Catherine Fontagné-Faucher; Marie-Line Daveran-Mingot; Muriel Cocaign-Bousquet
Journal: Appl Environ Microbiol Date: 2013-07-19 Impact factor: 4.792

4. Disruption of a Transcriptional Repressor by an Insertion Sequence Element Integration Leads to Activation of a Novel Silent Cellobiose Transporter in Lactococcus lactis MG1363.

Authors: Ana Solopova; Jan Kok; Oscar P Kuipers
Journal: Appl Environ Microbiol Date: 2017-11-16 Impact factor: 4.792

5. Interaction between the genomes of Lactococcus lactis and phages of the P335 species.

Authors: William J Kelly; Eric Altermann; Suzanne C Lambie; Sinead C Leahy
Journal: Front Microbiol Date: 2013-08-30 Impact factor: 5.640

6. AcmD, a homolog of the major autolysin AcmA of Lactococcus lactis, binds to the cell wall and contributes to cell separation and autolysis.

Authors: Ganesh Ram R Visweswaran; Anton Steen; Kees Leenhouts; Monika Szeliga; Beata Ruban; Anne Hesseling-Meinders; Bauke W Dijkstra; Oscar P Kuipers; Jan Kok; Girbe Buist
Journal: PLoS One Date: 2013-08-08 Impact factor: 3.240

7. Growth phase-dependent proteomes of the Malaysian isolated Lactococcus lactis dairy strain M4 using label-free qualitative shotgun proteomics analysis.

Authors: Theresa Wan Chen Yap; Amir Rabu; Farah Diba Abu Bakar; Raha Abdul Rahim; Nor Muhammad Mahadi; Rosli Md Illias; Abdul Munir Abdul Murad
Journal: ScientificWorldJournal Date: 2014-03-25